BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0975.p (314 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774662.1| preprotein translocase subunit SecF protein ... 579 e-163 ref|YP_001352044.1| preprotein translocase subunit SecF [Janthin... 488 e-136 emb|CAL60533.2| Protein-export membrane protein SecF [Herminiimo... 474 e-132 ref|YP_004751424.1| preprotein translocase, auxillary membrane c... 469 e-130 ref|ZP_03545924.1| protein-export membrane protein SecF [Comamon... 461 e-127 >ref|YP_003774662.1| preprotein translocase subunit SecF protein [Herbaspirillum seropedicae SmR1] gb|ADJ62754.1| preprotein translocase subunit SecF protein [Herbaspirillum seropedicae SmR1] Length = 314 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 311/314 (99%), Positives = 313/314 (99%) Query: 1 MEFFRIKKDIPFMRHALIFNAISALTFVAAVFFLFSKGLHFSIEFTGGTVMEVAYNKPAD 60 MEFFRIKKDIPFMRHALIFNAISALTFVAAVFFLFSKGLHFSIEFTGGTVMEVAYNKPAD Sbjct: 1 MEFFRIKKDIPFMRHALIFNAISALTFVAAVFFLFSKGLHFSIEFTGGTVMEVAYNKPAD 60 Query: 61 LEKIRKSIEGLGYRDTLVQSFGTAQDVMIRLPAQAGVNASQQSEKVNAALKAEDPDVRLQ 120 LEKIRKSIEGLGYRDTLVQSFGTAQDVMIRLPAQAGVNASQQ+EKVNAALKA+DPDVRLQ Sbjct: 61 LEKIRKSIEGLGYRDTLVQSFGTAQDVMIRLPAQAGVNASQQTEKVNAALKADDPDVRLQ 120 Query: 121 RVEFVGPQVGDELAHDGLLALGMVVLGIVIYLAFRFEWKFAVAAVIANLHDIIIILGFFA 180 RVEFVGPQVGDELAHDGLLALGMVVLGIVIYLAFRFEWKFAVAAVIANLHDIIIILGFFA Sbjct: 121 RVEFVGPQVGDELAHDGLLALGMVVLGIVIYLAFRFEWKFAVAAVIANLHDIIIILGFFA 180 Query: 181 FFQWEFSLTVLAAILAVLGYSVNESVVVFDRVREAFRDRRFGKLSAPEVLNHAITSTMSR 240 FFQWEFSLTVLAAILAVLGYSVNESVVVFDRVREAFRDRRFGKLS PEVLNHAITSTMSR Sbjct: 181 FFQWEFSLTVLAAILAVLGYSVNESVVVFDRVREAFRDRRFGKLSPPEVLNHAITSTMSR 240 Query: 241 TVITHGSTEMMVLAMFFFGGPTLHYFALALTIGILFGIYSSVFVAAALAMWLGVKREDLI 300 TVITHGSTEMMVLAMFFFGGPTLHYFALALTIGILFGIYSSVFVAAALAMWLGVKREDLI Sbjct: 241 TVITHGSTEMMVLAMFFFGGPTLHYFALALTIGILFGIYSSVFVAAALAMWLGVKREDLI 300 Query: 301 KPVKVKDENGGAVV 314 KPVKVKDENGGAVV Sbjct: 301 KPVKVKDENGGAVV 314 >ref|YP_001352044.1| preprotein translocase subunit SecF [Janthinobacterium sp. Marseille] gb|ABR88375.1| preprotein translocase SecF subunit [Janthinobacterium sp. Marseille] Length = 314 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 251/314 (79%), Positives = 281/314 (89%) Query: 1 MEFFRIKKDIPFMRHALIFNAISALTFVAAVFFLFSKGLHFSIEFTGGTVMEVAYNKPAD 60 MEFFRIKKDIPFMRHALIFN ISALTFVAAVFFL +GLH SIEFTGGTVMEV Y++PAD Sbjct: 1 MEFFRIKKDIPFMRHALIFNVISALTFVAAVFFLLHRGLHLSIEFTGGTVMEVTYSQPAD 60 Query: 61 LEKIRKSIEGLGYRDTLVQSFGTAQDVMIRLPAQAGVNASQQSEKVNAALKAEDPDVRLQ 120 +E +R + LGY D VQSFGTAQDV+IRLP Q +++Q SE+V ALKA+D V L+ Sbjct: 61 IEGVRGKLTDLGYVDMQVQSFGTAQDVLIRLPVQKNADSAQISERVIGALKAQDSTVELK 120 Query: 121 RVEFVGPQVGDELAHDGLLALGMVVLGIVIYLAFRFEWKFAVAAVIANLHDIIIILGFFA 180 RVEFVGPQVGDEL HDGL+ALGM+V+GIVIYLAFRFEWK+AV+A++ANLHD++IILGFFA Sbjct: 121 RVEFVGPQVGDELTHDGLMALGMLVIGIVIYLAFRFEWKYAVSAILANLHDVVIILGFFA 180 Query: 181 FFQWEFSLTVLAAILAVLGYSVNESVVVFDRVREAFRDRRFGKLSAPEVLNHAITSTMSR 240 FFQWEFSLTVLAA+LAVLGYSVNESVVVFDRVRE FRDRRFGK+ EVLNHAIT T+SR Sbjct: 181 FFQWEFSLTVLAAVLAVLGYSVNESVVVFDRVRETFRDRRFGKMPTEEVLNHAITQTISR 240 Query: 241 TVITHGSTEMMVLAMFFFGGPTLHYFALALTIGILFGIYSSVFVAAALAMWLGVKREDLI 300 TVITHGST++MVL+M FFGGPTLHYFALALTIGI FGIYSSVFVAAALAMWLGVKREDL+ Sbjct: 241 TVITHGSTQLMVLSMLFFGGPTLHYFALALTIGICFGIYSSVFVAAALAMWLGVKREDLL 300 Query: 301 KPVKVKDENGGAVV 314 KPVK KDE+ GAVV Sbjct: 301 KPVKEKDEHDGAVV 314 >emb|CAL60533.2| Protein-export membrane protein SecF [Herminiimonas arsenicoxydans] Length = 315 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 242/314 (77%), Positives = 276/314 (87%) Query: 1 MEFFRIKKDIPFMRHALIFNAISALTFVAAVFFLFSKGLHFSIEFTGGTVMEVAYNKPAD 60 MEFFRIKKDIPFMRHALIFN IS LTFVAAVFFL KGLH SIEFTGGTVME+ Y KPA+ Sbjct: 2 MEFFRIKKDIPFMRHALIFNVISVLTFVAAVFFLVHKGLHLSIEFTGGTVMEITYPKPAN 61 Query: 61 LEKIRKSIEGLGYRDTLVQSFGTAQDVMIRLPAQAGVNASQQSEKVNAALKAEDPDVRLQ 120 +E +R + LGY D VQSFGTAQDV+IRLP Q VN +Q SE+V ALKA+D V L+ Sbjct: 62 IEGVRTKLGELGYTDMQVQSFGTAQDVLIRLPVQQNVNTAQVSERVMTALKAQDETVSLK 121 Query: 121 RVEFVGPQVGDELAHDGLLALGMVVLGIVIYLAFRFEWKFAVAAVIANLHDIIIILGFFA 180 RVEFVGPQVG+EL HDGL+A+GM+V+G++IYLA RFEWK+AVAA+ ANLHD++IILGFFA Sbjct: 122 RVEFVGPQVGEELTHDGLMAMGMLVIGVMIYLAIRFEWKYAVAAIFANLHDVVIILGFFA 181 Query: 181 FFQWEFSLTVLAAILAVLGYSVNESVVVFDRVREAFRDRRFGKLSAPEVLNHAITSTMSR 240 FFQWEFSLTVLA ILAVLGYSVNESV+VFDRVRE FRDR+ GK++ +V+NHAIT T+SR Sbjct: 182 FFQWEFSLTVLAGILAVLGYSVNESVIVFDRVRETFRDRKHGKMAVADVMNHAITGTISR 241 Query: 241 TVITHGSTEMMVLAMFFFGGPTLHYFALALTIGILFGIYSSVFVAAALAMWLGVKREDLI 300 T+ITHGST++MVL+MFF GGPTLHYFALALTIGI FGIYSSVFVAAALAMWLGVKREDLI Sbjct: 242 TLITHGSTQLMVLSMFFLGGPTLHYFALALTIGICFGIYSSVFVAAALAMWLGVKREDLI 301 Query: 301 KPVKVKDENGGAVV 314 KP+K KDE+ GAVV Sbjct: 302 KPIKEKDEHDGAVV 315 >ref|YP_004751424.1| preprotein translocase, auxillary membrane component (General Secretory pathway) [Collimonas fungivorans Ter331] gb|AEK60601.1| preprotein translocase, auxillary membrane component (General Secretory Pathway) [Collimonas fungivorans Ter331] Length = 302 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 245/302 (81%), Positives = 275/302 (91%) Query: 13 MRHALIFNAISALTFVAAVFFLFSKGLHFSIEFTGGTVMEVAYNKPADLEKIRKSIEGLG 72 MRHALIFNAISALTFV AVFFLFSKGLH SIEFTGGTV+EVAY+KPA++E IRK++EG+G Sbjct: 1 MRHALIFNAISALTFVLAVFFLFSKGLHLSIEFTGGTVIEVAYSKPANIEGIRKTVEGIG 60 Query: 73 YRDTLVQSFGTAQDVMIRLPAQAGVNASQQSEKVNAALKAEDPDVRLQRVEFVGPQVGDE 132 Y D V +FGTAQDVMIRLPA+ G N++ QS V AL+ +DPDV+L+R EFVGPQVGDE Sbjct: 61 YTDNQVTNFGTAQDVMIRLPAKKGENSNAQSATVLKALQQQDPDVQLKRTEFVGPQVGDE 120 Query: 133 LAHDGLLALGMVVLGIVIYLAFRFEWKFAVAAVIANLHDIIIILGFFAFFQWEFSLTVLA 192 LAHDGL+AL VV+GIVIYLA RFEWK+AVAA+IANLHD++IILGFFAFFQWEFSLTVLA Sbjct: 121 LAHDGLMALLFVVIGIVIYLAIRFEWKYAVAAIIANLHDVVIILGFFAFFQWEFSLTVLA 180 Query: 193 AILAVLGYSVNESVVVFDRVREAFRDRRFGKLSAPEVLNHAITSTMSRTVITHGSTEMMV 252 AILAVLGYSVNESVVVFDRVRE FRDRRFGKL+ +V+NHAITST+SRT+ITHGSTE+MV Sbjct: 181 AILAVLGYSVNESVVVFDRVRETFRDRRFGKLAVSDVMNHAITSTISRTIITHGSTEIMV 240 Query: 253 LAMFFFGGPTLHYFALALTIGILFGIYSSVFVAAALAMWLGVKREDLIKPVKVKDENGGA 312 L+MF FGGP LHYFALALTIGILFGIYSSVFVAAA+AMWLGVKRED+IKPVK KDE GA Sbjct: 241 LSMFVFGGPALHYFALALTIGILFGIYSSVFVAAAVAMWLGVKREDMIKPVKEKDETDGA 300 Query: 313 VV 314 VV Sbjct: 301 VV 302 >ref|ZP_03545924.1| protein-export membrane protein SecF [Comamonas testosteroni KF-1] gb|EED70210.1| protein-export membrane protein SecF [Comamonas testosteroni KF-1] Length = 318 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 244/320 (76%), Positives = 280/320 (87%), Gaps = 8/320 (2%) Query: 1 MEFFRIKKDIPFMRHALIFNAISALTFVAAVFFLFSKGLHFSIEFTGGTVMEVAYNKPAD 60 MEFFRIKKDIPFMR+AL+FNAIS +TF AVFFLFS+GLH S+EFTGGTVMEVAY +PAD Sbjct: 1 MEFFRIKKDIPFMRYALVFNAISFITFALAVFFLFSRGLHLSVEFTGGTVMEVAYTQPAD 60 Query: 61 LEKIRKSIEGLGYRDTLVQSFGTAQDVMIRLPAQAGVNASQQSEKVNAALKAEDPDVRLQ 120 + K+R+++ LGY D +VQ+FGT++DVMIRLP Q GV +QQSE+V ALKAED +V L+ Sbjct: 61 IGKVRETVSKLGYADVIVQNFGTSKDVMIRLPVQKGVTTAQQSEQVITALKAEDAEVTLR 120 Query: 121 RVEFVGPQVGDELAHDGLLALGMVVLGIVIYLAFRFEWKFAVAAVIANLHDIIIILGFFA 180 R EFVGPQVGDEL H+GL+ALGMVVLGI+IYLAFRFEWKF VAA+IANLHD+IIILGFFA Sbjct: 121 RTEFVGPQVGDELMHNGLMALGMVVLGIIIYLAFRFEWKFGVAAIIANLHDVIIILGFFA 180 Query: 181 FFQWEFSLTVLAAILAVLGYSVNESVVVFDRVREAFRDRRFGKLSAPEVLNHAITSTMSR 240 FFQWEFSL+VLA +LAVLGYSVNESVV+FDR+REAF R+F KLS EV++HAITSTMSR Sbjct: 181 FFQWEFSLSVLAGVLAVLGYSVNESVVIFDRIREAF--RKFRKLSTHEVIDHAITSTMSR 238 Query: 241 TVITHGSTEMMVLAMFFFGGPTLHYFALALTIGILFGIYSSVFVAAALAMWLGVKREDLI 300 T+ITH STE MVL+MFFFGGP+LHYFALALTIGILFGIYSSVFVAAA+AMWLGVKREDL+ Sbjct: 239 TIITHASTEAMVLSMFFFGGPSLHYFALALTIGILFGIYSSVFVAAAIAMWLGVKREDLV 298 Query: 301 K-PVK-----VKDENGGAVV 314 K P K D N GAVV Sbjct: 299 KAPTKPGSQDPNDPNAGAVV 318