BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0973.p         (163 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774660.1| preprotein translocase transmembrane protein...   168   2e-40
ref|ZP_08274052.1| Preprotein translocase subunit YajC [Oxalobac...   159   9e-38
ref|YP_001352042.1| preprotein translocase subunit YajC [Janthin...   156   8e-37
gb|AEG68091.1| protein translocase auxillary subunit [Ralstonia ...   156   1e-36
ref|YP_002260674.1| preprotein translocase subunit yajc [Ralston...   155   2e-36

>ref|YP_003774660.1| preprotein translocase transmembrane protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ62752.1| preprotein translocase transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 110

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 105/110 (95%), Positives = 108/110 (98%)

Query: 54  VFISDAYAQTAAAAPGGVMGNLASFLPIILMFVVLYFLMIRPQMKRQKEQKAMMDALGKG 113
           +FISDAYAQTAAAAPGG MGNLASFLPIILMFVVLYFLMIRPQMKRQKEQKAMMDAL KG
Sbjct: 1   MFISDAYAQTAAAAPGGAMGNLASFLPIILMFVVLYFLMIRPQMKRQKEQKAMMDALAKG 60

Query: 114 DEVVTSGGLLGRITKVADGYITIEVSEGTEVIVQKGAVTTLLPKGTIKGL 163
           DEVVTSGG+LGRITKVADGYITIEVSEGTE+IVQKGAVTTLLPKGTIKGL
Sbjct: 61  DEVVTSGGMLGRITKVADGYITIEVSEGTEIIVQKGAVTTLLPKGTIKGL 110


>ref|ZP_08274052.1| Preprotein translocase subunit YajC [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF32478.1| Preprotein translocase subunit YajC [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 109

 Score =  159 bits (403), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 83/110 (75%), Positives = 97/110 (88%), Gaps = 1/110 (0%)

Query: 54  VFISDAYAQTAAAAPGGVMGNLASFLPIILMFVVLYFLMIRPQMKRQKEQKAMMDALGKG 113
           +FI++AYAQ+     G +  NL SFLPIILMFVVLYFLMIRPQMKRQKEQK+MMDAL KG
Sbjct: 1   MFITNAYAQSPLDGLG-LSSNLTSFLPIILMFVVLYFLMIRPQMKRQKEQKSMMDALAKG 59

Query: 114 DEVVTSGGLLGRITKVADGYITIEVSEGTEVIVQKGAVTTLLPKGTIKGL 163
           DEVVTSGG+LG++TKV D Y+TIEV++GTEV+VQKGAV+TLLPKGTIK L
Sbjct: 60  DEVVTSGGILGKVTKVTDAYLTIEVADGTEVLVQKGAVSTLLPKGTIKSL 109


>ref|YP_001352042.1| preprotein translocase subunit YajC [Janthinobacterium sp.
           Marseille]
 gb|ABR89025.1| preprotein translocase subunit YajC [Janthinobacterium sp.
           Marseille]
          Length = 107

 Score =  156 bits (395), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 80/110 (72%), Positives = 98/110 (89%), Gaps = 3/110 (2%)

Query: 54  VFISDAYAQTAAAAPGGVMGNLASFLPIILMFVVLYFLMIRPQMKRQKEQKAMMDALGKG 113
           +FIS+AYA TAA   GGV+GNL  F+PIILMFVVLYFLMIRPQMKRQKE KAM++A+ +G
Sbjct: 1   MFISNAYAATAA---GGVLGNLTQFVPIILMFVVLYFLMIRPQMKRQKEHKAMIEAVTRG 57

Query: 114 DEVVTSGGLLGRITKVADGYITIEVSEGTEVIVQKGAVTTLLPKGTIKGL 163
           DEVVTSGG+LG+ITKV+D Y+++EV +GTE+++QK AVTTLLPKGTIK L
Sbjct: 58  DEVVTSGGVLGKITKVSDVYLSLEVQDGTEIVIQKSAVTTLLPKGTIKSL 107


>gb|AEG68091.1| protein translocase auxillary subunit [Ralstonia solanacearum Po82]
          Length = 113

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/110 (72%), Positives = 94/110 (85%)

Query: 54  VFISDAYAQTAAAAPGGVMGNLASFLPIILMFVVLYFLMIRPQMKRQKEQKAMMDALGKG 113
           + ISDAYAQTA  APGG    L SFLPIILMFVVL+F+MIRPQMKRQKE KAM++AL KG
Sbjct: 4   LLISDAYAQTAGTAPGGAGNGLMSFLPIILMFVVLWFIMIRPQMKRQKETKAMLEALAKG 63

Query: 114 DEVVTSGGLLGRITKVADGYITIEVSEGTEVIVQKGAVTTLLPKGTIKGL 163
           DEVVTSGG+LG++TKVAD Y+T+EV+  TE+ VQK AVTT+LPKGT+K L
Sbjct: 64  DEVVTSGGILGKVTKVADQYVTVEVAPNTELTVQKNAVTTVLPKGTLKSL 113


>ref|YP_002260674.1| preprotein translocase subunit yajc [Ralstonia solanacearum
           IPO1609]
 emb|CAQ17354.1| preprotein translocase subunit yajc [Ralstonia solanacearum MolK2]
 emb|CAQ62614.1| preprotein translocase subunit yajc [Ralstonia solanacearum
           IPO1609]
          Length = 111

 Score =  155 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 79/110 (71%), Positives = 93/110 (84%)

Query: 54  VFISDAYAQTAAAAPGGVMGNLASFLPIILMFVVLYFLMIRPQMKRQKEQKAMMDALGKG 113
           + ISDAYAQTA  APGG    L SFLPIILMFVVL+F+MIRPQMKRQKE K M++AL KG
Sbjct: 2   LLISDAYAQTAGTAPGGAGNGLMSFLPIILMFVVLWFIMIRPQMKRQKETKTMLEALAKG 61

Query: 114 DEVVTSGGLLGRITKVADGYITIEVSEGTEVIVQKGAVTTLLPKGTIKGL 163
           DEVVTSGG+LG++TKVAD Y+T+EV+  TE+ VQK AVTT+LPKGT+K L
Sbjct: 62  DEVVTSGGILGKVTKVADQYVTVEVAPNTELTVQKNAVTTVLPKGTLKSL 111