BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0969.p (345 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774657.1| response regulator containing a CheY-like re... 578 e-163 ref|ZP_08274852.1| putative response regulator [Oxalobacteraceae... 412 e-113 ref|ZP_08505066.1| Response regulator rpfG [Methyloversatilis un... 367 2e-99 ref|YP_286102.1| response regulator receiver [Dechloromonas arom... 362 4e-98 ref|YP_003848055.1| response regulator receiver modulated metal ... 360 1e-97 >ref|YP_003774657.1| response regulator containing a CheY-like receiver domain and an HD-GYP domain [Herbaspirillum seropedicae SmR1] gb|ADJ62749.1| response regulator containing a CheY-like receiver domain and an HD-GYP domain [Herbaspirillum seropedicae SmR1] Length = 348 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 282/345 (81%), Positives = 315/345 (91%) Query: 1 MKILIVDDDKTNLSLFTHMLAQLPDTSISTCPDAYEALDWCGSHDPDLILLDYMMPGMDG 60 M ILIVDDDKTNLSLF+HML Q+P T I TC DA +ALDWC H PDLILLDYMMPGMDG Sbjct: 4 MNILIVDDDKTNLSLFSHMLGQVPQTRIDTCADARQALDWCQEHAPDLILLDYMMPGMDG 63 Query: 61 LDFLSRFRAMPGQEMTPVIMITADMGLQVRHKALQMSANDFLSKPVNRVELLARVKNMLA 120 LDFLSRFRAMPGQEMTPVIMITADMGLQVRH ALQMSANDFLSKPVNRVELLARVKNMLA Sbjct: 64 LDFLSRFRAMPGQEMTPVIMITADMGLQVRHTALQMSANDFLSKPVNRVELLARVKNMLA 123 Query: 121 MRKSQLAMSRKIEDLSEEVEQKAQQSTSLALNSVDLLSRAAGYRDPETGEHLVRMSNYTR 180 MR+SQLAMS+KI+ LSE+V+Q+ + S +LAL+SVDLL+RAAGYRDPETGEHL RM+NY R Sbjct: 124 MRRSQLAMSQKIDTLSEQVDQQVRHSDTLALDSVDLLARAAGYRDPETGEHLTRMANYAR 183 Query: 181 IIAAHLGLPKEEQDLLLAASPMHDIGKMGIPDHILLKPGRLDEEELKVMRLHAQIGADIL 240 IIAA +GL ++Q+LLL A+PMHDIGKMGIPDHILLKPGRLDEEELKVMR+HA+IGADIL Sbjct: 184 IIAARMGLDSQQQELLLNAAPMHDIGKMGIPDHILLKPGRLDEEELKVMRMHARIGADIL 243 Query: 241 RGSPSSLLQTASRIAETHHEKWDGSGYPNGIKGDDIPLYGRIVAVADVFDALTSSRPYKK 300 SPS LLQTAS+IA THHEKWDGSGYPNG+KG+ IPLYGRIVAVADVFDALTSSRPYK Sbjct: 244 VASPSPLLQTASQIALTHHEKWDGSGYPNGLKGEQIPLYGRIVAVADVFDALTSSRPYKP 303 Query: 301 GWSLEDAARYLRDNAGSHFDPRCVEAFFAGWEEVVDIYNRNQDGK 345 GWSLE A++YLR+ +G+HFDPRCVEAFFAGWEEV++I+NR Q+GK Sbjct: 304 GWSLERASQYLREQSGAHFDPRCVEAFFAGWEEVLEIFNRYQEGK 348 >ref|ZP_08274852.1| putative response regulator [Oxalobacteraceae bacterium IMCC9480] gb|EGF31681.1| putative response regulator [Oxalobacteraceae bacterium IMCC9480] Length = 345 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 200/344 (58%), Positives = 263/344 (76%) Query: 1 MKILIVDDDKTNLSLFTHMLAQLPDTSISTCPDAYEALDWCGSHDPDLILLDYMMPGMDG 60 M +LIVDDD TNL+LF+HML +P+ + + +AL WC + PDL+L+DYMMP MDG Sbjct: 1 MIVLIVDDDLTNLALFSHMLQAIPEVTPVRMDEPLKALAWCRDNAPDLLLVDYMMPDMDG 60 Query: 61 LDFLSRFRAMPGQEMTPVIMITADMGLQVRHKALQMSANDFLSKPVNRVELLARVKNMLA 120 L+FL FR +PG+ P++M+TAD+ +VRHKALQ+ ANDFL+KPVN+ EL ARV N+LA Sbjct: 61 LEFLQAFRQLPGKSDVPIVMVTADIQTEVRHKALQLGANDFLTKPVNKTELRARVSNLLA 120 Query: 121 MRKSQLAMSRKIEDLSEEVEQKAQQSTSLALNSVDLLSRAAGYRDPETGEHLVRMSNYTR 180 +R +Q ++ + E L+ EV + ++ + ++ LSRAA YRDPETG HLVR++ Y R Sbjct: 121 LRVAQQQLASRAEWLAGEVAKATREIVAREREAILRLSRAAEYRDPETGAHLVRLTKYAR 180 Query: 181 IIAAHLGLPKEEQDLLLAASPMHDIGKMGIPDHILLKPGRLDEEELKVMRLHAQIGADIL 240 ++AA++GL EQDLL A+PMHDIGK+GIPD+ILLKPGRLD E+++MR HAQIGADIL Sbjct: 181 LLAANMGLGPAEQDLLGDAAPMHDIGKVGIPDNILLKPGRLDAAEMEIMRTHAQIGADIL 240 Query: 241 RGSPSSLLQTASRIAETHHEKWDGSGYPNGIKGDDIPLYGRIVAVADVFDALTSSRPYKK 300 RGS S LLQ A+ IA THHEK+DGSGYPNG+ G+ IPLYGRI+AVADVFDALTS+RPYK Sbjct: 241 RGSASPLLQVAAAIALTHHEKFDGSGYPNGLAGEQIPLYGRIIAVADVFDALTSARPYKP 300 Query: 301 GWSLEDAARYLRDNAGSHFDPRCVEAFFAGWEEVVDIYNRNQDG 344 W L+ A + + +GSHFDP CV+AFF W+ V++IY+ +DG Sbjct: 301 AWELDRAVALILEGSGSHFDPVCVDAFFEDWDAVLEIYHAFRDG 344 >ref|ZP_08505066.1| Response regulator rpfG [Methyloversatilis universalis FAM5] gb|EGK71612.1| Response regulator rpfG [Methyloversatilis universalis FAM5] Length = 345 Score = 367 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 174/343 (50%), Positives = 246/343 (71%) Query: 1 MKILIVDDDKTNLSLFTHMLAQLPDTSISTCPDAYEALDWCGSHDPDLILLDYMMPGMDG 60 M +++VDD + NL L + +L +LPD +T EAL+ C DPDL+++DYMMP MDG Sbjct: 1 MNVVVVDDAQVNLVLMSALLGKLPDVDSTTFQVPAEALEHCIRTDPDLVIVDYMMPDMDG 60 Query: 61 LDFLSRFRAMPGQEMTPVIMITADMGLQVRHKALQMSANDFLSKPVNRVELLARVKNMLA 120 ++F+ RFRA P + TP++M+TAD +VR++AL+ ANDFL+KPV+R+E +RV+NML+ Sbjct: 61 IEFIRRFRAHPARAQTPLLMVTADHEKEVRYRALESGANDFLTKPVDRIEFTSRVRNMLS 120 Query: 121 MRKSQLAMSRKIEDLSEEVEQKAQQSTSLALNSVDLLSRAAGYRDPETGEHLVRMSNYTR 180 +R Q+A+S L+ EV + + +++ L+RAA +RDPETG H++RM++++ Sbjct: 121 LRAGQVALSNHARTLAAEVRRATAEIFERERETLNKLARAAEFRDPETGAHILRMAHFSA 180 Query: 181 IIAAHLGLPKEEQDLLLAASPMHDIGKMGIPDHILLKPGRLDEEELKVMRLHAQIGADIL 240 +IA +GL + Q+ LL A+PMHD+GK+G PDHILLKPG+L EE +M+ HA IG +IL Sbjct: 181 LIANRMGLDADTQESLLIAAPMHDVGKLGTPDHILLKPGKLTPEEFDIMKQHASIGYEIL 240 Query: 241 RGSPSSLLQTASRIAETHHEKWDGSGYPNGIKGDDIPLYGRIVAVADVFDALTSSRPYKK 300 +GS S +Q A+ IA +HHEK+DGSGYP G+ G+DIPL+GRIVAVADVFDALTS+RPYK Sbjct: 241 KGSASPYMQLAATIALSHHEKFDGSGYPKGLAGEDIPLFGRIVAVADVFDALTSARPYKP 300 Query: 301 GWSLEDAARYLRDNAGSHFDPRCVEAFFAGWEEVVDIYNRNQD 343 W LE A ++L D GSHFDP C +A W +V+DI +D Sbjct: 301 AWELERARQFLADGRGSHFDPLCADALLDSWNDVLDIRATYRD 343 >ref|YP_286102.1| response regulator receiver [Dechloromonas aromatica RCB] gb|AAZ47632.1| Response regulator receiver:Metal-dependent phosphohydrolase, HD subdomain [Dechloromonas aromatica RCB] Length = 350 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 175/341 (51%), Positives = 243/341 (71%) Query: 3 ILIVDDDKTNLSLFTHMLAQLPDTSISTCPDAYEALDWCGSHDPDLILLDYMMPGMDGLD 62 +LIVDD NL+L ++ +L D S + AL+WC + PDL+++DYMMP MDGL Sbjct: 4 VLIVDDSDINLTLIKALVLKLGDCSPILFDNPLSALEWCRENVPDLVIVDYMMPDMDGLR 63 Query: 63 FLSRFRAMPGQEMTPVIMITADMGLQVRHKALQMSANDFLSKPVNRVELLARVKNMLAMR 122 F+S FRA+ G++ PV+MITA+ VR+ AL ANDFL+KP++R+E AR +NML++R Sbjct: 64 FISAFRALHGRDEIPVLMITANDQKDVRYDALLGGANDFLTKPIDRIEFSARARNMLSLR 123 Query: 123 KSQLAMSRKIEDLSEEVEQKAQQSTSLALNSVDLLSRAAGYRDPETGEHLVRMSNYTRII 182 Q ++ + E LS VE + + + +SRAA +RDPETG H+ RM++Y++II Sbjct: 124 TGQKFLADRAEHLSALVEARTAEIREREKELIFRISRAAEFRDPETGAHIQRMAHYSQII 183 Query: 183 AAHLGLPKEEQDLLLAASPMHDIGKMGIPDHILLKPGRLDEEELKVMRLHAQIGADILRG 242 A L L Q L+L A+PMHD+GK+GIPD+ILLKPG+L EE +VM+ HA+IG ++L+ Sbjct: 184 AQGLDLSPSTQKLILEAAPMHDVGKIGIPDYILLKPGKLTPEEFEVMKGHARIGHELLKN 243 Query: 243 SPSSLLQTASRIAETHHEKWDGSGYPNGIKGDDIPLYGRIVAVADVFDALTSSRPYKKGW 302 S S ++Q + +A +HHEK+DGSGYP G+KG+ IPL+GRIVAVADVFDALTS RPYK+ W Sbjct: 244 SRSEIMQAGAEVAISHHEKYDGSGYPFGLKGNHIPLFGRIVAVADVFDALTSERPYKRAW 303 Query: 303 SLEDAARYLRDNAGSHFDPRCVEAFFAGWEEVVDIYNRNQD 343 L+DA ++L D G HFDP C+EAF AGWE+V++I R +D Sbjct: 304 PLDDACKFLEDGRGKHFDPLCIEAFLAGWEQVLEIRQRFRD 344 >ref|YP_003848055.1| response regulator receiver modulated metal dependent phosphohydrolase [Gallionella capsiferriformans ES-2] gb|ADL56291.1| response regulator receiver modulated metal dependent phosphohydrolase [Gallionella capsiferriformans ES-2] Length = 363 Score = 360 bits (925), Expect = 1e-97, Method: Composition-based stats. Identities = 175/349 (50%), Positives = 252/349 (72%), Gaps = 8/349 (2%) Query: 1 MKILIVDDDKTNLSLFTHMLAQLPDTSISTCPDAYEALDWCGSHDPDLILLDYMMPGMDG 60 + ++IVDD N++L +H++ +L D E L WC + PDL+++DYMMP +DG Sbjct: 8 LNVIIVDDTPINVTLISHLIGRLEDCVAKGFTIPQEGLAWCLENVPDLVIVDYMMPELDG 67 Query: 61 LDFLSRFRAMPGQEMTPVIMITADMGLQVRHKALQMSANDFLSKPVNRVELLARVKNMLA 120 ++F+ +FRA G+ PV+M+TA+ + VRH+AL+ ANDFL+KP+++ E +AR +NML+ Sbjct: 68 IEFVRQFRAGEGRADIPVLMVTANDQIAVRHQALEAGANDFLTKPIDKAEFMARTRNMLS 127 Query: 121 MRKSQLAMSRKIEDLSEEVEQKAQQSTSLAL----NSVDLLSRAAGYRDPETGEHLVRMS 176 +R+SQ RK+ED + ++++ +++T+L L +V LS+AA RDPETG H++RMS Sbjct: 128 LRRSQ----RKLEDRAAWLDEEVKKATALILARERETVIRLSKAADSRDPETGAHILRMS 183 Query: 177 NYTRIIAAHLGLPKEEQDLLLAASPMHDIGKMGIPDHILLKPGRLDEEELKVMRLHAQIG 236 +++++IA LGL + EQ+++L A+PMHDIGK+GIPD+ILLKPGRLD E ++M+ H+ +G Sbjct: 184 HFSKLIAKQLGLSEAEQEMILEAAPMHDIGKVGIPDNILLKPGRLDVAEFEIMKRHSILG 243 Query: 237 ADILRGSPSSLLQTASRIAETHHEKWDGSGYPNGIKGDDIPLYGRIVAVADVFDALTSSR 296 DIL GS S +LQ A++IA +HHEK+DGSGYP G+ G+ IPL+ RI AV DVFDALTS R Sbjct: 244 YDILNGSQSEMLQAAAQIALSHHEKFDGSGYPRGLIGEAIPLFARICAVGDVFDALTSER 303 Query: 297 PYKKGWSLEDAARYLRDNAGSHFDPRCVEAFFAGWEEVVDIYNRNQDGK 345 PYKK W E A LR+ GSHFDP CVEAF + W+ V+ I R QD K Sbjct: 304 PYKKAWDDERAIALLREGMGSHFDPACVEAFLSDWDGVMTIRKRFQDDK 352