BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0968.p (250 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774656.1| regulator of the two-component system protei... 273 2e-71 ref|YP_003775687.1| two component response regulator protein [He... 158 7e-37 ref|YP_003845931.1| response regulator receiver modulated diguan... 117 1e-24 ref|YP_003846799.1| response regulator receiver modulated diguan... 115 7e-24 ref|YP_002890202.1| response regulator receiver modulated diguan... 108 9e-22 >ref|YP_003774656.1| regulator of the two-component system protein [Herbaspirillum seropedicae SmR1] gb|ADJ62748.1| regulator of the two-component system protein [Herbaspirillum seropedicae SmR1] Length = 317 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 146/159 (91%), Positives = 151/159 (94%) Query: 86 MLTFIEPTLFEKLRSAQALPSPGGVRLTIMRLCAQDDPDMHELIHLVQADPALSGRIIRI 145 MLTFIEPTLF+KLRSAQALPSPGGVRLTIMRLCAQD+PDM ELIHLVQADPALSGRIIRI Sbjct: 1 MLTFIEPTLFDKLRSAQALPSPGGVRLTIMRLCAQDNPDMAELIHLVQADPALSGRIIRI 60 Query: 146 VNVLNADRVRPIASVSMDSMLLVGLQAVRQLALALSLAETTAPASCANFKLPAFWAHSFA 205 VNVLNA RVRPIASVSMDS+LLVGLQAVRQLALALSLAET APASCANF LPAFWAHSFA Sbjct: 61 VNVLNAQRVRPIASVSMDSLLLVGLQAVRQLALALSLAETRAPASCANFSLPAFWAHSFA 120 Query: 206 MACSAQAISGHTRVAPLGEMFTTGLLANIGKLTLASAHP 244 MACSAQA++ RVAPLGEMFTTGLLANIGKLTLASA P Sbjct: 121 MACSAQAVTSQLRVAPLGEMFTTGLLANIGKLTLASAQP 159 >ref|YP_003775687.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63779.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 310 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 80/161 (49%), Positives = 114/161 (70%) Query: 86 MLTFIEPTLFEKLRSAQALPSPGGVRLTIMRLCAQDDPDMHELIHLVQADPALSGRIIRI 145 M T+++P F +++ ++ LP+P GVRL IM++C Q+D + EL+ VQ DP L+GR+I+I Sbjct: 1 MSTYVDPQTFREMQDSEVLPAPSGVRLKIMQMCQQEDIALPELVAQVQGDPVLAGRLIQI 60 Query: 146 VNVLNADRVRPIASVSMDSMLLVGLQAVRQLALALSLAETTAPASCANFKLPAFWAHSFA 205 N+ N ++ R +ASV+++ +L+VGL AVRQ+ALA+SL E+ CA F AFW+ S A Sbjct: 61 ANIPNINKGRMVASVNVELLLMVGLHAVRQMALAISLTESARRGDCAEFDYDAFWSRSTA 120 Query: 206 MACSAQAISGHTRVAPLGEMFTTGLLANIGKLTLASAHPGR 246 MAC+ QA+ +VAP EMFT GLLA IG+L LASA P R Sbjct: 121 MACAGQALGDLLQVAPPAEMFTIGLLAGIGQLGLASARPKR 161 >ref|YP_003845931.1| response regulator receiver modulated diguanylate cyclase [Gallionella capsiferriformans ES-2] gb|ADL54167.1| response regulator receiver modulated diguanylate cyclase [Gallionella capsiferriformans ES-2] Length = 632 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 63/155 (40%), Positives = 94/155 (60%), Gaps = 1/155 (0%) Query: 95 FEKLRSAQALPSPGGVRLTIMRLCAQDDPDMHELIHLVQADPALSGRIIRIVNVLNADRV 154 FE ++ +LPSP GV L I++L +DD + ++ L+ +DPAL+G I+++ N+L Sbjct: 9 FEAFKAHGSLPSPRGVALQIIQLADRDDTTIGQIARLIGSDPALAGNIVKVANLLTHRGS 68 Query: 155 RPIASVSMDSMLLVGLQAVRQLALALSLAETTAPASCANFKLPAFWAHSFAMACSAQAIS 214 RPIASV+ D++ + G+++VRQLAL+LSL + +CA F FWAHS +AQ I Sbjct: 69 RPIASVA-DAVTIQGIKSVRQLALSLSLVDAHRHGACAGFDYQKFWAHSVCTGIAAQQIV 127 Query: 215 GHTRVAPLGEMFTTGLLANIGKLTLASAHPGRIRR 249 +V E F GLL+ IG+L LA+ P R Sbjct: 128 AKMQVGVADEAFLLGLLSKIGRLALATVFPAEYAR 162 >ref|YP_003846799.1| response regulator receiver modulated diguanylate cyclase [Gallionella capsiferriformans ES-2] gb|ADL55035.1| response regulator receiver modulated diguanylate cyclase [Gallionella capsiferriformans ES-2] Length = 636 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 56/155 (36%), Positives = 94/155 (60%), Gaps = 1/155 (0%) Query: 87 LTFIEPTLFEKLRSAQALPSPGGVRLTIMRLCAQDDPDMHELIHLVQADPALSGRIIRIV 146 + ++ F +L+ + LP+P G+ L +++L Q D E+ HL+ ADPALS R+I+ Sbjct: 1 MNLVDDPKFTQLKISGRLPTPKGIALQVIKLTQQADASNQEIAHLIGADPALSVRVIKAA 60 Query: 147 NVLNADRVRPIASVSMDSMLLVGLQAVRQLALALSLAETTAPASCANFKLPAFWAHSFAM 206 NVL A+ RP+ ++S D+++++G + +RQL L ++L C F P FW HS Sbjct: 61 NVLLANSSRPVVTIS-DAVMVLGARGLRQLVLGIALIVDYRHGPCKQFDYPHFWTHSLLT 119 Query: 207 ACSAQAISGHTRVAPLGEMFTTGLLANIGKLTLAS 241 +A+ ++ HTR+A + E+F GL +IG+L LA+ Sbjct: 120 GIAAKHLAQHTRLASVDEIFVAGLFCHIGQLALAT 154 >ref|YP_002890202.1| response regulator receiver modulated diguanylate cyclase [Thauera sp. MZ1T] gb|ACR01825.1| response regulator receiver modulated diguanylate cyclase [Thauera sp. MZ1T] Length = 642 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 67/171 (39%), Positives = 97/171 (56%), Gaps = 9/171 (5%) Query: 79 PQPGRQMMLTFIEPTLFEKLRSAQALPSPGGVRLTIMRLCAQDDPDMHELIHLVQADPAL 138 PQP I+ + +L++A LPSP GV L I+RL D + EL +++ DPA Sbjct: 2 PQP--------IDMKRYAQLKAAGDLPSPRGVALAIIRLTQAPDVSLAELGRVIKGDPAF 53 Query: 139 SGRIIRIVNVLNADRVRPIASVSMDSMLLVGLQAVRQLALALSLAETTAPASCANFKLPA 198 GR+I+ N L A+ R I SV ++++++GL AVR LAL SL T +C F P Sbjct: 54 VGRLIKAANGLIAENRRAIVSVQ-EALMVLGLPAVRTLALGFSLLSTYRKGTCQGFDYPR 112 Query: 199 FWAHSFAMACSAQAISGHTRVAPLGEMFTTGLLANIGKLTLASAHPGRIRR 249 FW+ + MA S QA++ RV E F+ GLLA +G+L+LA+ +P R Sbjct: 113 FWSSALLMAISMQALTQRVRVVAPDEAFSLGLLARVGELSLATLYPEAFSR 163