BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0967.p         (144 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774656.1| regulator of the two-component system protei...   153   1e-35
ref|YP_003775687.1| two component response regulator protein [He...    64   9e-09
ref|YP_932948.1| response regulator [Azoarcus sp. BH72] >gi|1196...    57   1e-06

>ref|YP_003774656.1| regulator of the two-component system protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ62748.1| regulator of the two-component system protein [Herbaspirillum
           seropedicae SmR1]
          Length = 317

 Score =  153 bits (386), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 87/139 (62%), Positives = 102/139 (73%), Gaps = 2/139 (1%)

Query: 1   MEQSLFGFNHLNIAAALMQDWKIPELFCDAVLHYEAPALPEELPAPRPLEIIWTLYLSAA 60
           MEQSLFGFNHLNIAAALMQDWKIP+LFCDAVLHYE P +  E+ A R  EI+WTL+L+ A
Sbjct: 178 MEQSLFGFNHLNIAAALMQDWKIPDLFCDAVLHYETPVVIGEIAATRQDEIVWTLHLAQA 237

Query: 61  MAELGCGTPQVAEAALPKIARALPQLQLAPNDFPALYQAAGEDWQDWTQTMHLTAKTLWQ 120
           MAELGCG  Q A+AAL +   AL QLQLAP+D   LYQ AG+DWQ+WTQTM +   + WQ
Sbjct: 238 MAELGCGPAQQAQAALARAGTALAQLQLAPHDLLVLYQQAGQDWQEWTQTMRIAGTSPWQ 297

Query: 121 GLPGQVHDKLLRLQEAVGG 139
            L  +  + L   Q A GG
Sbjct: 298 ALDARSLETL--RQRAQGG 314


>ref|YP_003775687.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ63779.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 310

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 57/117 (48%)

Query: 2   EQSLFGFNHLNIAAALMQDWKIPELFCDAVLHYEAPALPEELPAPRPLEIIWTLYLSAAM 61
           E+  FGF+HL +AAA+MQDW  P +FC+AVLH+  PA        R  ++   L L+  +
Sbjct: 179 ERESFGFDHLALAAAMMQDWHFPRIFCEAVLHHRDPAASGLEEDDRQQKVTRLLELAGCV 238

Query: 62  AELGCGTPQVAEAALPKIARALPQLQLAPNDFPALYQAAGEDWQDWTQTMHLTAKTL 118
           A++   +     A LP++ +      L  +    +      DW DW   + +  + L
Sbjct: 239 ADVCTASDAQRAALLPRLLQLGQHFALPVSSLEYVCGRVSWDWSDWGALLKVPTRVL 295


>ref|YP_932948.1| response regulator [Azoarcus sp. BH72]
 emb|CAL94061.1| probable response regulator [Azoarcus sp. BH72]
          Length = 656

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 2/114 (1%)

Query: 1   MEQSLFGFNHLNIAAALMQDWKIPELFCDAVLHYEAPALPEELPAPRPLEIIWTLYLSAA 60
           +EQ  F   H  ++AA++ DW +P +F   V+ +E           R  +++  L L+  
Sbjct: 178 LEQQAFAMTHRELSAAMLVDWGLPPIFTQPVMFFEQADKATFAAESREAQLMECLGLART 237

Query: 61  MAELGCGTPQVAEAA-LPKIARALPQLQLAPNDFPALYQAAGEDWQDWTQTMHL 113
           +AEL C  P V + + +P + +    L L   DF A  +  G +W +W + + L
Sbjct: 238 LAEL-CLAPSVEQTSMMPGVLKQAAALGLNKEDFAAACERIGREWMEWGKLLQL 290