BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0966.p (493 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001793193.1| PAS/PAC sensor signal transduction histidine... 391 e-106 ref|YP_160729.1| sensory transduction histidine kinase [Aromatol... 362 8e-98 ref|YP_932996.1| putative histidine protein kinase [Azoarcus sp.... 305 9e-81 ref|YP_957542.1| PAS/PAC sensor signal transduction histidine ki... 279 7e-73 ref|ZP_03131476.1| PAS/PAC sensor signal transduction histidine ... 254 2e-65 >ref|YP_001793193.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix cholodnii SP-6] gb|ACB36428.1| PAS/PAC sensor signal transduction histidine kinase [Leptothrix cholodnii SP-6] Length = 490 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 217/479 (45%), Positives = 307/479 (64%), Gaps = 4/479 (0%) Query: 9 LSEAPDAYVLMDMQGGVVYWNRCAEQIFGYSGQEVLGQHLADFIVPPERRNEEERVFADT 68 + + PDA ++ G V+ WN AE++FG+S + LG L + +VP ++ + A T Sbjct: 11 IDDLPDACFVLSSTGIVLQWNAGAEEVFGHSAAQALGHDLIELVVPDDQAGPQRAWLATT 70 Query: 69 LALGRAECQSIRRRKDGSLLHLSVSNKLLRDEQGQPQYVLSCKRDISQATVQRDISLIAA 128 LA G + C+++RRR+DGSLL + V++++L GQP +L ++D++ VQRD L+ A Sbjct: 71 LAGGPSTCEAVRRRRDGSLLCVDVTSRMLPAPPGQPARILVVEKDVTLIKVQRDAKLMEA 130 Query: 129 SVHGLYDSLPDGIVVVNALDRVVLANRRAGELFGWAVGELTGRAIDVLIPQRFLAMHAQN 188 L +S PDGIV+VN +V+AN +A LFG+ G L GR++D L+P+R+ H + Sbjct: 131 RFRELLESTPDGIVMVNPTGHIVIANSQAERLFGYPPGGLRGRSVDQLLPERYRHAHVAH 190 Query: 189 LAEYLSGRAAPASNTTPDLCGLKRNGSEFPVDVSLSPLVIEGETFLMIAVRDISDRKRIE 248 ++Y A + DL GL+R+G+EFP+++SL PL E F+M A+RDIS+RKR E Sbjct: 191 RSQYFLQPRKRAMGSGLDLAGLRRDGTEFPIEISLGPLRTEDGAFVMSAIRDISERKRFE 250 Query: 249 EDLAEKNRALQEAVESRDRFLANTSHELRTPLNAILGFTEILLTRMGGPLTADQEQQLQT 308 L EKN L A E++ RFLAN SHELRTPLNAI+GFT LL R+ GPLT DQE+QL+T Sbjct: 251 RALQEKNVELAAANEAKTRFLANMSHELRTPLNAIIGFTGTLLMRLPGPLTPDQERQLRT 310 Query: 309 VHESAQHLLGLITSLLDVSRMEAEAEDLIPEALLCSELIEEAVAVLRPAAMKKGLQLELA 368 V S +HLL LI LLDV+++EA + E L L+ E V+ L P A+ KGL L L+ Sbjct: 311 VQASGRHLLALINDLLDVAKIEAGKAQIHLEMLDVGALLHEVVSTLHPQAVAKGLALTLS 370 Query: 369 PYAGEVRIHANRRALAQILMHLVGNAIKFTDRGQVLVKLRQQRHDKTLTSWIEVSDSGCG 428 ++ ++RR L QI+++L+GNAIKFTD G + V LR + IEV+D+G G Sbjct: 371 VPEPALQCESDRRMLNQIVINLIGNAIKFTDAGSIHVGLRARAGGFE----IEVTDTGIG 426 Query: 429 ISEQDQQKLFRAFTQLDATASRKHEGMGQGLYLSQKLANLMGGTITVQSRVGTGSRFTL 487 I DQ KLF AF+++ ++ R EG G GL+LSQKLA L+GGTI V+S G GS F+L Sbjct: 427 IGTDDQAKLFGAFSRVVSSQGRVAEGTGLGLHLSQKLAALLGGTIDVRSEAGRGSCFSL 485 >ref|YP_160729.1| sensory transduction histidine kinase [Aromatoleum aromaticum EbN1] emb|CAI09828.1| Sensory transduction histidine kinase [Aromatoleum aromaticum EbN1] Length = 491 Score = 362 bits (929), Expect = 8e-98, Method: Composition-based stats. Identities = 203/484 (41%), Positives = 304/484 (62%), Gaps = 4/484 (0%) Query: 9 LSEAPDAYVLMDMQGGVVYWNRCAEQIFGYSGQEVLGQHLADFIVPPERRNEEERVFADT 68 +++ PDA +++D G V+ WN AE++FGYS E +G + + + P E++ A+T Sbjct: 10 IADDPDALMMLDHAGKVLEWNDGAERMFGYSRSEAVGARIHELVTVPGSEAEQDHFIAET 69 Query: 69 LALGRAECQSIRRRKDGSLLHLSVSNKLLRDEQGQPQ-YVLSCKRDISQATVQRDISLIA 127 GR +++RRR DG+L+++ +S K+ QG + Y+L ++D++Q VQRD + Sbjct: 70 TECGRGTFEALRRRNDGTLIYVVISGKV---GQGAGELYLLFSEKDVTQLKVQRDSKSLE 126 Query: 128 ASVHGLYDSLPDGIVVVNALDRVVLANRRAGELFGWAVGELTGRAIDVLIPQRFLAMHAQ 187 + L DS+PDGIV+VN +++ANR+A LFG+ EL R I+ L+PQRF + H Sbjct: 127 SKFRELLDSMPDGIVIVNPTGHILIANRQAEWLFGYDRDELRARPIEDLLPQRFRSAHKG 186 Query: 188 NLAEYLSGRAAPASNTTPDLCGLKRNGSEFPVDVSLSPLVIEGETFLMIAVRDISDRKRI 247 + + Y S A +L GL+++G+EFPV++SLSPL E +M A+RD+S+R+ Sbjct: 187 HRSHYFSTPRTRAMGAGLELYGLRKDGTEFPVEISLSPLKTEETPVVMSAIRDVSERRGF 246 Query: 248 EEDLAEKNRALQEAVESRDRFLANTSHELRTPLNAILGFTEILLTRMGGPLTADQEQQLQ 307 E+ L EKN L A ++D FLA+ SHELRTPLNA++GFT LL ++ G L +Q +QL+ Sbjct: 247 EQALQEKNLELLAANRAKDHFLASMSHELRTPLNAVIGFTGTLLMKLPGELNPEQTRQLE 306 Query: 308 TVHESAQHLLGLITSLLDVSRMEAEAEDLIPEALLCSELIEEAVAVLRPAAMKKGLQLEL 367 V +A+HLL LI LL+++++EA +L E + C L+ E A LRP A+ KGL+L L Sbjct: 307 IVRNNARHLLALINDLLNLAKIEAGKIELNFEPIDCGALVGEIAASLRPQALSKGLELIL 366 Query: 368 APYAGEVRIHANRRALAQILMHLVGNAIKFTDRGQVLVKLRQQRHDKTLTSWIEVSDSGC 427 A + + +RRAL+QI+++LVGNAIKFT G V + L + K + VSD+G Sbjct: 367 ATQSDPIVFETDRRALSQIIINLVGNAIKFTLHGSVRIDLVLEEAGKKRRLALSVSDTGP 426 Query: 428 GISEQDQQKLFRAFTQLDATASRKHEGMGQGLYLSQKLANLMGGTITVQSRVGTGSRFTL 487 GI E++ LF AF Q A+ + EG G GL+LS+KLA L+GG ++ S +GTGS FTL Sbjct: 427 GIGEEELSSLFEAFVQGHASRMKGVEGTGLGLHLSRKLAVLLGGELSCTSTLGTGSVFTL 486 Query: 488 CLEE 491 L E Sbjct: 487 ILPE 490 >ref|YP_932996.1| putative histidine protein kinase [Azoarcus sp. BH72] emb|CAL94109.1| putative histidine protein kinase [Azoarcus sp. BH72] Length = 613 Score = 305 bits (782), Expect = 9e-81, Method: Composition-based stats. Identities = 196/492 (39%), Positives = 277/492 (56%), Gaps = 20/492 (4%) Query: 8 LLSEAPDAYVLMDMQGGVVYWNRCAEQIFGYSGQEVLGQHLADFIVPPERRN----EEER 63 LL PD V+++ G +V+ N+ A+ +FGY E+ GQ + + ++P R Sbjct: 132 LLESMPDGIVMVNALGRIVFSNQQADAMFGYGAGELRGQPI-EALLPARLRTAHVGHRSH 190 Query: 64 VFAD----TLALGRAECQSIRRRKDGSLLHLSVSNKLLRDEQGQPQYVLSCKRDISQATV 119 F T+ +G + R DGS L +S L ++G VLS RDI+ Sbjct: 191 YFGQPRTRTMGMG---LELFGLRHDGSEFPLEISLSPLHTDEGT--MVLSAIRDIAGRKK 245 Query: 120 QRDISLIAASVHGLYDSLPDGIVVVNALDRVVLANRRAGELFGWAVGELTGRAIDVLIPQ 179 + GL +S PD IV+VN R+VL N +A LFG+A EL + I++L+P+ Sbjct: 246 AEE------KFRGLLESAPDAIVIVNRDGRIVLVNSQAERLFGYARSELIDQQIEMLMPE 299 Query: 180 RFLAMHAQNLAEYLSGRAAPASNTTPDLCGLKRNGSEFPVDVSLSPLVIEGETFLMIAVR 239 RF A H + + + +L G +RNG EFPV++SLSPL E T + A+R Sbjct: 300 RFRAQHPGHRNSFFTDPRVRPMGVGLELFGRRRNGEEFPVEISLSPLETEEGTLVSSAIR 359 Query: 240 DISDRKRIEEDLAEKNRALQEAVESRDRFLANTSHELRTPLNAILGFTEILLTRMGGPLT 299 DI++RKR E L EKN L +A ++D FLA+ SHELRTPLNAI+GFT LL ++ GPL Sbjct: 360 DITERKRFERALQEKNVELAQANAAKDHFLASMSHELRTPLNAIIGFTGTLLMKLPGPLN 419 Query: 300 ADQEQQLQTVHESAQHLLGLITSLLDVSRMEAEAEDLIPEALLCSELIEEAVAVLRPAAM 359 DQE+QL+TV SA HLL LI LLDV+R+EA + + E + +EE VLRP A Sbjct: 420 EDQEKQLRTVQRSASHLLSLINDLLDVARIEAGKFEPVFEPVDLCATLEELAVVLRPQAE 479 Query: 360 KKGLQLELAPYAGEVRIHANRRALAQILMHLVGNAIKFTDRGQVLVKLRQQRHDKTLTSW 419 KGL+LEL G + ++RA +QI+++L+ NAIKFT+ G++ + L + D Sbjct: 480 AKGLRLELKLPGGSCVVETDQRAFSQIVINLLQNAIKFTEHGRIELALARIEADGRPAVE 539 Query: 420 IEVSDSGCGISEQDQQKLFRAFTQLDATASRKHEGMGQGLYLSQKLANLMGGTITVQSRV 479 ++V+DSG GI DQ +LF F ++ A EG G GL+L KLA +GG I + S Sbjct: 540 LQVADSGIGIQPDDQTRLFAPFARITPAAGPAQEGTGLGLHLCLKLAAQLGGQIAMHSTY 599 Query: 480 GTGSRFTLCLEE 491 G GS F+L L E Sbjct: 600 GEGSVFSLILPE 611 Score = 184 bits (468), Expect = 3e-44, Method: Composition-based stats. Identities = 102/256 (39%), Positives = 158/256 (61%), Gaps = 6/256 (2%) Query: 6 QLLLSEAPDAYVLMDMQGGVVYWNRCAEQIFGYSGQEVLGQHLADFIVPPERRNEEERVF 65 +L+ E+PDA +++D G V +WN A ++FGY+ E GQ L D VPP+RR E+ + Sbjct: 7 RLMQDESPDACIVLDADGAVRHWNGGAVRLFGYNAAEADGQLLIDLTVPPDRRAAEQALL 66 Query: 66 ADTLALGRAECQSIRRRKDGSLLHLSVSNKLLRDEQGQPQYVLSCKRDISQATVQRDISL 125 D LG A +S+R+RKDGSL+H+++S + + + G P YVL+ +D++Q V R+ L Sbjct: 67 DDLPPLGNATHESVRQRKDGSLVHVALSMRRVHAD-GLP-YVLTSMKDVTQLKVAREARL 124 Query: 126 IAASVHGLYDSLPDGIVVVNALDRVVLANRRAGELFGWAVGELTGRAIDVLIPQRFLAMH 185 + L +S+PDGIV+VNAL R+V +N++A +FG+ GEL G+ I+ L+P R H Sbjct: 125 VETRYRDLLESMPDGIVMVNALGRIVFSNQQADAMFGYGAGELRGQPIEALLPARLRTAH 184 Query: 186 AQNLAEYLSGRAAPASNTTPDLCGLKRNGSEFPVDVSLSPLVIEGETFLMIAVRDISDRK 245 + + Y +L GL+ +GSEFP+++SLSPL + T ++ A+RDI+ RK Sbjct: 185 VGHRSHYFGQPRTRTMGMGLELFGLRHDGSEFPLEISLSPLHTDEGTMVLSAIRDIAGRK 244 Query: 246 RIEEDLAEKNRALQEA 261 + E EK R L E+ Sbjct: 245 KAE----EKFRGLLES 256 >ref|YP_957542.1| PAS/PAC sensor signal transduction histidine kinase [Marinobacter aquaeolei VT8] gb|ABM17355.1| PAS/PAC sensor signal transduction histidine kinase [Marinobacter aquaeolei VT8] Length = 484 Score = 279 bits (714), Expect = 7e-73, Method: Composition-based stats. Identities = 188/489 (38%), Positives = 274/489 (56%), Gaps = 18/489 (3%) Query: 4 LEQLLLSEAP-DAYVLMDMQGGVVYWNRCAEQIFGYSGQEVLGQHLADFIVPPERRNEEE 62 +E + +P DA VL+ G V WN AE + G++ +E + Q LAD I E + E Sbjct: 8 METATMRPSPADAVVLLRPDGVVEDWNSAAEILLGFTREEAVQQPLADLI---ELTDSEH 64 Query: 63 RVFA-DTLALGRA-ECQSIRRRKDGSLLHLSVSNKLLRDEQGQPQYVLSCKRDISQATVQ 120 R D GR+ Q + R K G + V + D QG V++ RD+S+ Sbjct: 65 RALTLDFGDCGRSLSTQGLCRSKKGQSFPVEVVCSPV-DVQGD-SLVVTLIRDVSE---- 118 Query: 121 RDISLIAASVHGLYDSLPDGIVVVNALDRVVLANRRAGELFGWAVGELTGRAIDVLIPQR 180 + GL +S PD IV+V R+VL N +A LFG+ E+ G+ +++L+P+R Sbjct: 119 --LKRAEQKFRGLLESAPDAIVIVKQGGRIVLVNSQAESLFGYHRDEMIGQNVEILMPER 176 Query: 181 FLAMHAQNLAEYLSGRAAPASNTTPDLCGLKRNGSEFPVDVSLSPLVIEGETFLMIAVRD 240 + H + + +L GL++ G EFP+++SLSPL E + A+RD Sbjct: 177 YRGQHIGHRDGFFKDPRVRPMGMGLELFGLRKGGIEFPIEISLSPLETEEGILVSSAIRD 236 Query: 241 ISDRKRIEEDLAEKNRALQEAVESRDRFLANTSHELRTPLNAILGFTEILLTRMGGPLTA 300 I++RKR E L +KN+ L A +++D+FLA+ SHELRTPLNAI+GFT LL + GPL Sbjct: 237 ITERKRFERALQDKNQELATANKAKDQFLASMSHELRTPLNAIIGFTGTLLMGLPGPLND 296 Query: 301 DQEQQLQTVHESAQHLLGLITSLLDVSRMEAEAEDLIPEALLCSELIEEAVAVLRPAAMK 360 DQ++QL TV SAQHLL LI LLDV++++A +L PE + ++L+EE A + Sbjct: 297 DQKKQLGTVRSSAQHLLSLINDLLDVAKIDAGKLELKPENINLNQLLEEIHGTFSLQARE 356 Query: 361 KGLQLELAPYAGEVRIHANRRALAQILMHLVGNAIKFTDRGQVLVKLRQQRHDKTLTSWI 420 K L+L L V + +RRAL+QI+M+L+ N +KFT G V V L + + + Sbjct: 357 KALELGLQLPDQPVNLETDRRALSQIVMNLISNGLKFTHEGGVYVTLVRPNPQ---SVHV 413 Query: 421 EVSDSGCGISEQDQQKLFRAFTQLDATASRKHEGMGQGLYLSQKLANLMGGTITVQSRVG 480 V D+G GI Q+ LF+ F++ +SR+ EG G GLYLSQKLAN +GG I +Q Sbjct: 414 CVRDTGPGIDTSAQENLFQPFSR-GVLSSRRTEGTGLGLYLSQKLANQLGGNIQLQRSDA 472 Query: 481 TGSRFTLCL 489 +GS F L L Sbjct: 473 SGSEFLLSL 481 >ref|ZP_03131476.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] gb|EDY17904.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter flavus Ellin428] Length = 375 Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 151/360 (41%), Positives = 216/360 (60%), Gaps = 8/360 (2%) Query: 133 LYDSLPDGIVVVNALDRVVLANRRAGELFGWAVGELTGRAIDVLIPQRFLAMHAQNLAEY 192 L ++ PD +V+VN +VL N + +LFG+A EL GR I++LIPQRF H + Y Sbjct: 12 LLEAAPDAMVIVNQAGEIVLVNSQTEKLFGFAREELLGRPIEILIPQRFRGHHPSHRDGY 71 Query: 193 LSGRAAPASNTTPDLCGLKRNGSEFPVDVSLSPLVIEGETFLMIAVRDISDRKRIEEDLA 252 + DL GL+++G+EFPV++SLSPL + A+RD +DRKRIE L Sbjct: 72 FGDPHVRPMGASMDLYGLRKDGTEFPVEISLSPLRTPEGLLVTSAIRDTTDRKRIERSLQ 131 Query: 253 EKNRALQEAVESRDRFLANTSHELRTPLNAILGFTEILLTRMGGPLTADQEQQLQTVHES 312 EKN L+ A +++DRFLA+ SHELRTPLN I+GF E L GP+ Q++ L+ + Sbjct: 132 EKNAELERANQAKDRFLASMSHELRTPLNGIIGFAEFLADGKPGPVNGKQKEYLEDILNG 191 Query: 313 AQHLLGLITSLLDVSRMEAEAEDLIPEALLCSELIEEAVAVLRPAAMKK--GLQLELAPY 370 +HLL LI +LD+ +++A +L + IEE A +RP A K G+ +E+AP Sbjct: 192 GRHLLHLINDMLDLVKVQAGKLELHLATFRIEDAIEEVCAGVRPLADNKRIGVHVEIAP- 250 Query: 371 AGEVRIHANRRALAQILMHLVGNAIKFTDR-GQVLVKLRQQRHDKTLTSWIEVSDSGCGI 429 G I + + Q+L +L+ NAIKFTD GQV VK+ Q+ D+ S V D+G GI Sbjct: 251 -GFSPITHDEQRFKQVLYNLLSNAIKFTDDGGQVEVKVEQRGADRFCLS---VRDTGIGI 306 Query: 430 SEQDQQKLFRAFTQLDATASRKHEGMGQGLYLSQKLANLMGGTITVQSRVGTGSRFTLCL 489 +D Q+LF F QL+ +R+ G G GL L++K+ L GGTI+V+S VG GS F++ L Sbjct: 307 KPEDIQRLFVEFEQLETGHARRFGGTGLGLALTRKIVELKGGTISVESAVGRGSTFSVTL 366