BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0965.p (211 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774655.1| response regulator protein [Herbaspirillum s... 243 1e-62 ref|YP_982912.1| two component LuxR family transcriptional regul... 188 4e-46 gb|AAK94468.1| response regulator CorR [Pseudomonas syringae pv.... 149 3e-34 ref|ZP_06460775.1| DNA-binding response regulator CorR [Pseudomo... 147 7e-34 gb|AAA87562.2| response regulator protein CorR [Pseudomonas syri... 144 1e-32 >ref|YP_003774655.1| response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62747.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 204 Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats. Identities = 151/206 (73%), Positives = 172/206 (83%), Gaps = 5/206 (2%) Query: 9 MPTSRLLIIDDHALFRCGLRLVLQAALPHANIDEAASLEDAMRLEDGQ--PPGMVLLDIQ 66 M T LLIIDDHALFR GLRLVLQ +LP A + EAASLE+A+ L+ + P ++L+DIQ Sbjct: 1 MSTPHLLIIDDHALFRSGLRLVLQNSLPQARLSEAASLEEALHLQGDEEDAPTLLLIDIQ 60 Query: 67 LGGLNGIDGMSVLARKWPQVPVIILSADDTDETVREATRRGAAAFVSKAATADHILRVLL 126 LGGLNGIDGM+VLAR+WP VP IILSADDTD TVR+A +RGA+AFVSKAATA+HI+ V+ Sbjct: 61 LGGLNGIDGMAVLARRWPGVPAIILSADDTDHTVRQALQRGASAFVSKAATAEHIMAVIA 120 Query: 127 EVAGGRHVLPVPDVAADA-TGKPQFTPRQYEVLGLLSQGLTNKAIGRRLNLSENTIRGHV 185 +V GG + P ++ D K QFTPRQYEVLGLLSQGLTNKAIGRRLNLSENTIRGHV Sbjct: 121 KVGGG--LTPCQNLRGDQPDDKAQFTPRQYEVLGLLSQGLTNKAIGRRLNLSENTIRGHV 178 Query: 186 QAILLALDVDNRAEAAFAARRRGLVS 211 QAILLALDVDNRAEAAFAARRRGLVS Sbjct: 179 QAILLALDVDNRAEAAFAARRRGLVS 204 >ref|YP_982912.1| two component LuxR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gb|ABM37991.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 224 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 110/215 (51%), Positives = 149/215 (69%), Gaps = 9/215 (4%) Query: 2 AAGGFPNMPTSRLLIIDDHALFRCGLRLVLQAALPHANIDEAASLEDAMRLEDGQPPGMV 61 A P MP + +L+IDDHALFR G+RLVL A + + + EAASLE A+R PP +V Sbjct: 12 AGALMPAMPPTSILLIDDHALFRSGMRLVLLAGMANVEVLEAASLEQAVRTVT-SPPALV 70 Query: 62 LLDIQLGGLNGIDGMSVLARKWPQVPVIILSADDTDETVREATRRGAAAFVSKAATADHI 121 LLDIQL G+NG++G+ + ++WP VP+++LS+ ET+R A RGAAAFVSKA TA+ I Sbjct: 71 LLDIQLQGVNGLEGLGLFKQRWPGVPLVMLSSAAEPETIRLALSRGAAAFVSKADTAEKI 130 Query: 122 LRVLLEVAGGRHVLP------VPDVAADATGKPQFTPRQYEVLGLLSQGLTNKAIGRRLN 175 ++V+ +V G LP + +A+AT +P+ TPRQ EVL LL +GL+NK I RRL Sbjct: 131 IKVIEQVLSGG--LPDASAGMAHNTSANATPRPRLTPRQCEVLDLLCEGLSNKVIARRLE 188 Query: 176 LSENTIRGHVQAILLALDVDNRAEAAFAARRRGLV 210 LSE T+RGHVQA+L L V +R++ FAARR GL+ Sbjct: 189 LSEFTVRGHVQAVLGLLGVSSRSQVMFAARRSGLI 223 >gb|AAK94468.1| response regulator CorR [Pseudomonas syringae pv. actinidiae] gb|EFW77575.1| DNA-binding response regulator CorR [Pseudomonas syringae pv. glycinea str. B076] Length = 198 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 95/202 (47%), Positives = 128/202 (63%), Gaps = 5/202 (2%) Query: 9 MPTSRLLIIDDHALFRCGLRLVLQAALPHANIDEAASLEDAMRLEDGQPPGMVLLDIQLG 68 MP+S +L+IDDHALFR + L+L+ LP + EA+ +E A+ + P ++LLD+QL Sbjct: 1 MPSSSILLIDDHALFRSSVALMLEMRLPRTTVSEASRIEQALA-QALPAPDLILLDVQLE 59 Query: 69 GLNGIDGMSVLARKWPQVPVIILSADDTDETVREATRRGAAAFVSKAATADHILRVLLEV 128 NG++G+++L +WP V+I+SA D D VREA +RGA F SKA +H+L+ + + Sbjct: 60 STNGLEGIALLQERWPLARVVIVSAFDRDAIVREAIQRGAVEFHSKAECPEHLLQRIQAL 119 Query: 129 AGGRHVLPVPDVAADATGKPQFTPRQYEVLGLLSQGLTNKAIGRRLNLSENTIRGHVQAI 188 G P P A AT P T RQ +VLGLL +GLTNK I +L SE+T+R HVQAI Sbjct: 120 LSGEP--PEPRTIA-ATPLP-LTSRQRQVLGLLCRGLTNKEIALQLWRSEHTVRSHVQAI 175 Query: 189 LLALDVDNRAEAAFAARRRGLV 210 L L R EAA AARR GLV Sbjct: 176 LTILQTSCRTEAADAARRLGLV 197 >ref|ZP_06460775.1| DNA-binding response regulator CorR [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 198 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 95/202 (47%), Positives = 127/202 (62%), Gaps = 5/202 (2%) Query: 9 MPTSRLLIIDDHALFRCGLRLVLQAALPHANIDEAASLEDAMRLEDGQPPGMVLLDIQLG 68 MP+S L+IDDHALFR + L+L+ LP + EA+ +E A+ + P ++LLD+QL Sbjct: 1 MPSSSSLLIDDHALFRSSVALMLEMRLPRTTVSEASRIEQALA-QALPAPDLILLDVQLE 59 Query: 69 GLNGIDGMSVLARKWPQVPVIILSADDTDETVREATRRGAAAFVSKAATADHILRVLLEV 128 NG++G+++L +WP V+I+SA D D VREA +RGA F SKA +H+L+ + + Sbjct: 60 STNGLEGIALLQERWPLARVVIVSAFDRDAIVREAIQRGAVEFHSKAECPEHLLQRIQAL 119 Query: 129 AGGRHVLPVPDVAADATGKPQFTPRQYEVLGLLSQGLTNKAIGRRLNLSENTIRGHVQAI 188 G P P A AT P T RQ +VLGLL +GLTNK I +L SE+T+R HVQAI Sbjct: 120 LSGEP--PEPRTIA-ATPLP-LTSRQRQVLGLLCRGLTNKEIALQLWRSEHTVRSHVQAI 175 Query: 189 LLALDVDNRAEAAFAARRRGLV 210 L L R EAA AARR GLV Sbjct: 176 LTILQTSCRTEAADAARRLGLV 197 >gb|AAA87562.2| response regulator protein CorR [Pseudomonas syringae pv. glycinea] Length = 197 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 92/202 (45%), Positives = 128/202 (63%), Gaps = 6/202 (2%) Query: 9 MPTSRLLIIDDHALFRCGLRLVLQAALPHANIDEAASLEDAMRLEDGQPPGMVLLDIQLG 68 MP+S +L+IDDHALFR + L+L+ LP + E + +E+A + +PP ++LLD+Q+ Sbjct: 1 MPSSSILLIDDHALFRSSVALMLEMRLPRTTVSERSRIEEA-SAQACRPPDLILLDLQMK 59 Query: 69 GLNGIDGMSVLARKWPQVPVIILSADDTDETVREATRRGAAAFVSKAATADHILRVLLEV 128 G NG++ +++L +W V+I+SA D D+ V EA +RGA F SKA +H+L+ + + Sbjct: 60 GTNGLETIALLQERWSSARVVIVSAFDRDQ-VCEAIQRGAVEFHSKAECPEHLLQRIQAL 118 Query: 129 AGGRHVLPVPDVAADATGKPQFTPRQYEVLGLLSQGLTNKAIGRRLNLSENTIRGHVQAI 188 G P P A AT P T RQ +VLGLL +GLTNK I +L SE+T+R HVQAI Sbjct: 119 LSGEP--PEPRTIA-ATPLP-LTSRQRQVLGLLCRGLTNKEIALQLWRSEHTVRSHVQAI 174 Query: 189 LLALDVDNRAEAAFAARRRGLV 210 L L R EAA AARR GLV Sbjct: 175 LTILQTSCRTEAADAARRLGLV 196