BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0962.p (338 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774652.1| S-adenosylmethionine:tRNA-ribosyltransferase... 613 e-173 ref|YP_001352040.1| S-adenosylmethionine:tRNA ribosyltransferase... 524 e-147 ref|YP_004751419.1| S-adenosylmethionine:tRNA ribosyltransferase... 522 e-146 ref|YP_001098658.1| S-adenosylmethionine:tRNA ribosyltransferase... 513 e-143 ref|ZP_08274050.1| S-adenosylmethionine:tRNA ribosyltransferase-... 498 e-139 >ref|YP_003774652.1| S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase)protein [Herbaspirillum seropedicae SmR1] gb|ADJ62744.1| S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase)protein [Herbaspirillum seropedicae SmR1] Length = 338 Score = 613 bits (1581), Expect = e-173, Method: Composition-based stats. Identities = 322/338 (95%), Positives = 330/338 (97%) Query: 1 MYSLSDFDFELPPELIAQTPLAERSASRLLQVQGAQLTDRRFSDIVELLQPGDLLVFNDT 60 MYSLSDFDFELPPELIAQTPLAERSASRLLQVQGAQLTDRRFSDIV+LLQ GDLLVFNDT Sbjct: 1 MYSLSDFDFELPPELIAQTPLAERSASRLLQVQGAQLTDRRFSDIVDLLQAGDLLVFNDT 60 Query: 61 RVIKARLFGVKETGGKIEALVERILDPRTVHAQVRASKSPPPGTRIRLADAFDVTVGERF 120 RVIKARLFGVKETGGKIEALVERILDPRTVHAQVRASKSPPPGTRIRLADAF+VTVGERF Sbjct: 61 RVIKARLFGVKETGGKIEALVERILDPRTVHAQVRASKSPPPGTRIRLADAFEVTVGERF 120 Query: 121 GEFFTLHFPADAFELLEQYGSLPLPPYIDHEADAYDETRYQTVYAKEPGAVAAPTAGLHF 180 GEF+TLHFP DAF LLEQYGSLPLPPYIDHEADAYDETRYQTVYAKEPGAVAAPTAGLHF Sbjct: 121 GEFYTLHFPEDAFALLEQYGSLPLPPYIDHEADAYDETRYQTVYAKEPGAVAAPTAGLHF 180 Query: 181 DEALLQQLAARGVKQAFVTLHVGAGTFQPVRVEDLSQHKMHSEWYTISPETVEAVRATKA 240 D+ALL+QLAARGV+QAFVTLHVGAGTFQPVRVEDLSQHKMHSEWYTI PETVEAVRA KA Sbjct: 181 DQALLEQLAARGVQQAFVTLHVGAGTFQPVRVEDLSQHKMHSEWYTIPPETVEAVRAAKA 240 Query: 241 AGGRVIAVGTTSMRALESGSQSGQLQAGSDDTQLFITPGYTFKTVDQLVTNFHLPKSTLL 300 AG RVIAVGTTSMRALESGSQSG L+AGSDDTQLFITPGYTFKTVDQLVTNFHLPKSTLL Sbjct: 241 AGRRVIAVGTTSMRALESGSQSGALKAGSDDTQLFITPGYTFKTVDQLVTNFHLPKSTLL 300 Query: 301 MLVSAFAGYEHIRAAYAHAIAQQYRFFSYGDAMLLTRT 338 MLVSAFAGYE IRAAYAHAIAQ+YRFFSYGDAMLLTRT Sbjct: 301 MLVSAFAGYELIRAAYAHAIAQKYRFFSYGDAMLLTRT 338 >ref|YP_001352040.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Janthinobacterium sp. Marseille] sp|A6SUU3|QUEA_JANMA RecName: Full=S-adenosylmethionine:tRNA ribosyltransferase-isomerase; AltName: Full=Queuosine biosynthesis protein queA gb|ABR89182.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Janthinobacterium sp. Marseille] Length = 341 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 264/337 (78%), Positives = 296/337 (87%) Query: 1 MYSLSDFDFELPPELIAQTPLAERSASRLLQVQGAQLTDRRFSDIVELLQPGDLLVFNDT 60 MYSLSDFDFELP ELIAQTPLAERSASRLLQV Q+TDR F+ IV+LL PGDLLVFNDT Sbjct: 1 MYSLSDFDFELPQELIAQTPLAERSASRLLQVLPEQMTDRNFAYIVDLLSPGDLLVFNDT 60 Query: 61 RVIKARLFGVKETGGKIEALVERILDPRTVHAQVRASKSPPPGTRIRLADAFDVTVGERF 120 RV+KAR FG+KETGGK+E LVER++D R VHAQ+RASKSP G RIRLADAFDV VGER Sbjct: 61 RVLKARFFGIKETGGKVEVLVERVIDQRNVHAQIRASKSPAVGMRIRLADAFDVIVGERA 120 Query: 121 GEFFTLHFPADAFELLEQYGSLPLPPYIDHEADAYDETRYQTVYAKEPGAVAAPTAGLHF 180 GEF+ L FP D FEL+E +G LPLPPYI+H ADAYDETRYQTVYAK PGAVAAPTAGLHF Sbjct: 121 GEFYELQFPDDVFELIEAHGRLPLPPYIEHAADAYDETRYQTVYAKTPGAVAAPTAGLHF 180 Query: 181 DEALLQQLAARGVKQAFVTLHVGAGTFQPVRVEDLSQHKMHSEWYTISPETVEAVRATKA 240 D+ALL L A+GVK A++TLHVGAGTFQPVR E+L++H MHSEWYTIS +TV+ V+AT+ Sbjct: 181 DQALLDALTAKGVKLAYITLHVGAGTFQPVRNENLAEHNMHSEWYTISQQTVDLVKATQV 240 Query: 241 AGGRVIAVGTTSMRALESGSQSGQLQAGSDDTQLFITPGYTFKTVDQLVTNFHLPKSTLL 300 AGG ++AVGTTSMRALES SQSG LQAGS DT+LFITPGYTFKTV +L+TNFHLPKSTLL Sbjct: 241 AGGNIVAVGTTSMRALESASQSGSLQAGSADTRLFITPGYTFKTVTRLITNFHLPKSTLL 300 Query: 301 MLVSAFAGYEHIRAAYAHAIAQQYRFFSYGDAMLLTR 337 MLVSAFAGY+ IRAAY HAI+Q+YRFFSYGDAM LTR Sbjct: 301 MLVSAFAGYDTIRAAYQHAISQRYRFFSYGDAMFLTR 337 >ref|YP_004751419.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Collimonas fungivorans Ter331] gb|AEK60596.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Collimonas fungivorans Ter331] Length = 342 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 265/336 (78%), Positives = 302/336 (89%) Query: 1 MYSLSDFDFELPPELIAQTPLAERSASRLLQVQGAQLTDRRFSDIVELLQPGDLLVFNDT 60 M+SLSD+DFELPPELIAQTPL+ERSASRLL + G +L DR+F+DIV+ L GDLLVFNDT Sbjct: 1 MHSLSDYDFELPPELIAQTPLSERSASRLLHLDGDRLIDRQFTDIVDQLAAGDLLVFNDT 60 Query: 61 RVIKARLFGVKETGGKIEALVERILDPRTVHAQVRASKSPPPGTRIRLADAFDVTVGERF 120 RV+KAR FGVKETGGK+E LVER++D RTVHAQVRASKSPP G RI LA+AFDV VGER Sbjct: 61 RVLKARFFGVKETGGKVEVLVERVVDNRTVHAQVRASKSPPAGARICLAEAFDVVVGERV 120 Query: 121 GEFFTLHFPADAFELLEQYGSLPLPPYIDHEADAYDETRYQTVYAKEPGAVAAPTAGLHF 180 GEF+TL FPAD FEL+E +G LPLPPYI+H+ADA+DETRYQTVYAK GAVAAPTAGLHF Sbjct: 121 GEFYTLVFPADVFELIEAHGRLPLPPYIEHDADAFDETRYQTVYAKHAGAVAAPTAGLHF 180 Query: 181 DEALLQQLAARGVKQAFVTLHVGAGTFQPVRVEDLSQHKMHSEWYTISPETVEAVRATKA 240 D+ALL++L +G+ A+VTLHVGAGTFQPVR E+L++HKMHSEWYTI+ TVEAVRATKA Sbjct: 181 DQALLERLQQKGIGFAYVTLHVGAGTFQPVRSENLAEHKMHSEWYTITEATVEAVRATKA 240 Query: 241 AGGRVIAVGTTSMRALESGSQSGQLQAGSDDTQLFITPGYTFKTVDQLVTNFHLPKSTLL 300 AGG+VIAVGTTS+RALES SQSG LQAGS DT LFITPGY FKTV++L+TNFHLPKSTLL Sbjct: 241 AGGKVIAVGTTSLRALESASQSGVLQAGSADTALFITPGYVFKTVERLITNFHLPKSTLL 300 Query: 301 MLVSAFAGYEHIRAAYAHAIAQQYRFFSYGDAMLLT 336 MLVSAFAGY+ IRAAYAHAIAQ+YRFFSYGDAMLL+ Sbjct: 301 MLVSAFAGYDCIRAAYAHAIAQRYRFFSYGDAMLLS 336 >ref|YP_001098658.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Herminiimonas arsenicoxydans] sp|A4G1Z2|QUEA_HERAR RecName: Full=S-adenosylmethionine:tRNA ribosyltransferase-isomerase; AltName: Full=Queuosine biosynthesis protein queA emb|CAL60529.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase (Queuosine biosynthesis protein QueA) [Herminiimonas arsenicoxydans] Length = 341 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 262/337 (77%), Positives = 291/337 (86%) Query: 1 MYSLSDFDFELPPELIAQTPLAERSASRLLQVQGAQLTDRRFSDIVELLQPGDLLVFNDT 60 MYSLSDFDFELP ELIAQTPLAERSASRLL V + DR F+DIV+LL PGDLLVFNDT Sbjct: 1 MYSLSDFDFELPQELIAQTPLAERSASRLLHVAQDGMIDRAFADIVDLLNPGDLLVFNDT 60 Query: 61 RVIKARLFGVKETGGKIEALVERILDPRTVHAQVRASKSPPPGTRIRLADAFDVTVGERF 120 RV+KAR FGVKETGGK+E LVER++D VHAQ+RASKSP PG +IRLADAFDV VGER Sbjct: 61 RVLKARFFGVKETGGKVEVLVERVIDSAHVHAQIRASKSPVPGMKIRLADAFDVIVGERA 120 Query: 121 GEFFTLHFPADAFELLEQYGSLPLPPYIDHEADAYDETRYQTVYAKEPGAVAAPTAGLHF 180 GEF+ L FP D F L+E +G LPLPPYI+H ADAYDETRYQTVYAK PGAVAAPTAGLHF Sbjct: 121 GEFYELQFPGDIFALIEAHGRLPLPPYIEHAADAYDETRYQTVYAKTPGAVAAPTAGLHF 180 Query: 181 DEALLQQLAARGVKQAFVTLHVGAGTFQPVRVEDLSQHKMHSEWYTISPETVEAVRATKA 240 D+ALL L A+GV+ A+VTLHVGAGTFQPVR E+L++H MHSEWYTIS ETV AV A +A Sbjct: 181 DQALLDTLKAKGVQFAYVTLHVGAGTFQPVRNENLAEHNMHSEWYTISQETVGAVHAAQA 240 Query: 241 AGGRVIAVGTTSMRALESGSQSGQLQAGSDDTQLFITPGYTFKTVDQLVTNFHLPKSTLL 300 AG ++AVGTTSMRALES SQSG LQAGS DT+LFITPGYTFKTV +L+TNFHLPKSTLL Sbjct: 241 AGHNIVAVGTTSMRALESASQSGSLQAGSADTRLFITPGYTFKTVTRLITNFHLPKSTLL 300 Query: 301 MLVSAFAGYEHIRAAYAHAIAQQYRFFSYGDAMLLTR 337 MLVSAFAGY+ IRAAY HAI+Q+YRFFSYGDAM LTR Sbjct: 301 MLVSAFAGYDAIRAAYQHAISQRYRFFSYGDAMFLTR 337 >ref|ZP_08274050.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32476.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Oxalobacteraceae bacterium IMCC9480] Length = 341 Score = 498 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 255/336 (75%), Positives = 289/336 (86%) Query: 1 MYSLSDFDFELPPELIAQTPLAERSASRLLQVQGAQLTDRRFSDIVELLQPGDLLVFNDT 60 MYSLSDFDF+LP LIAQ PLAERSASRLLQ+ G DR+F+DIV LL PGDLLVFNDT Sbjct: 1 MYSLSDFDFDLPQSLIAQHPLAERSASRLLQLDGDTPVDRQFADIVALLTPGDLLVFNDT 60 Query: 61 RVIKARLFGVKETGGKIEALVERILDPRTVHAQVRASKSPPPGTRIRLADAFDVTVGERF 120 RV+KAR FG K++GGK+E L+ER+LD RTVHAQ+R+SKSP G+ +RL+DAFDVTVG R Sbjct: 61 RVLKARFFGNKQSGGKVEVLIERVLDARTVHAQIRSSKSPVAGSIVRLSDAFDVTVGARA 120 Query: 121 GEFFTLHFPADAFELLEQYGSLPLPPYIDHEADAYDETRYQTVYAKEPGAVAAPTAGLHF 180 GEFFTL FP+D FEL+E YG LPLPPYIDH ADA+DETRYQTVYA+ PGAVAAPTAGLHF Sbjct: 121 GEFFTLTFPSDVFELIETYGRLPLPPYIDHTADAFDETRYQTVYARTPGAVAAPTAGLHF 180 Query: 181 DEALLQQLAARGVKQAFVTLHVGAGTFQPVRVEDLSQHKMHSEWYTISPETVEAVRATKA 240 D+ALL +L G++ AFVTLHVGAGTFQPVR E L++H MHSEWYT+ TV+AVR T+A Sbjct: 181 DQALLDKLTEHGIRFAFVTLHVGAGTFQPVRTEVLAEHAMHSEWYTLPAATVDAVRTTRA 240 Query: 241 AGGRVIAVGTTSMRALESGSQSGQLQAGSDDTQLFITPGYTFKTVDQLVTNFHLPKSTLL 300 AG V+AVGTTS+RALES SQSG+L AGS DT+LFITPGY FKTV +L+TNFHLPKSTLL Sbjct: 241 AGRDVVAVGTTSLRALESASQSGELVAGSADTRLFITPGYRFKTVTRLITNFHLPKSTLL 300 Query: 301 MLVSAFAGYEHIRAAYAHAIAQQYRFFSYGDAMLLT 336 MLVSAFAGY IRAAYAHAIAQQYRFFSYGDAM LT Sbjct: 301 MLVSAFAGYPAIRAAYAHAIAQQYRFFSYGDAMFLT 336