BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0950.p (144 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774643.1| biopolymer transport ExbD/TolR protein [Herb... 250 4e-65 ref|YP_001354155.1| biopolymer transport protein TolR [Janthinob... 173 9e-42 ref|YP_004754052.1| Tol biopolymer transport system, TolR protei... 170 8e-41 ref|YP_001100657.1| putative biopolymer transport protein ExbD/T... 169 1e-40 ref|ZP_08274764.1| Tol biopolymer transport system, TolR protein... 166 1e-39 >ref|YP_003774643.1| biopolymer transport ExbD/TolR protein [Herbaspirillum seropedicae SmR1] gb|ADJ62735.1| biopolymer transport ExbD/TolR protein [Herbaspirillum seropedicae SmR1] Length = 144 Score = 250 bits (639), Expect = 4e-65, Method: Composition-based stats. Identities = 139/144 (96%), Positives = 144/144 (100%) Query: 1 MAGSSMRGGRPRKFKSEINVVPYIDVMLVLLIIFMVATPITNPSVINLPTAGKSTQPPSD 60 MAGSSMRGGRPRKFKSEINVVPYIDVMLVLLIIFMVATPITNPSVINLPTAGKSTQPPSD Sbjct: 1 MAGSSMRGGRPRKFKSEINVVPYIDVMLVLLIIFMVATPITNPSVINLPTAGKSTQPPSD 60 Query: 61 YIEIALKPNAQATIRINGPKSGGKKAETVTGKTDLSERLRKLHEDNPDLAVMISADKEIK 120 YIEIALKPN+QATIRINGPKSGGKKAETVTGKTDLSERLRKLH+DNP+LAVMISADK+IK Sbjct: 61 YIEIALKPNSQATIRINGPKSGGKKAETVTGKTDLSERLRKLHDDNPELAVMISADKDIK 120 Query: 121 YDDVVQVISEAKKQGIARVGLATK 144 YD+VVQVISEAKKQGIARVGLATK Sbjct: 121 YDEVVQVISEAKKQGIARVGLATK 144 >ref|YP_001354155.1| biopolymer transport protein TolR [Janthinobacterium sp. Marseille] gb|ABR89292.1| biopolymer transport protein TolR [Janthinobacterium sp. Marseille] Length = 146 Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats. Identities = 93/143 (65%), Positives = 110/143 (76%) Query: 2 AGSSMRGGRPRKFKSEINVVPYIDVMLVLLIIFMVATPITNPSVINLPTAGKSTQPPSDY 61 + SMRGGR RKFKSEINVVPYIDVMLVLL+IFMVA P+TNP VINLP A KST PP++Y Sbjct: 4 SSGSMRGGRTRKFKSEINVVPYIDVMLVLLVIFMVAAPLTNPGVINLPNAAKSTLPPTEY 63 Query: 62 IEIALKPNAQATIRINGPKSGGKKAETVTGKTDLSERLRKLHEDNPDLAVMISADKEIKY 121 I I L+P+ AT+ I G K G ET + L+++L+ +H D P+L VMISADK IKY Sbjct: 64 IRIDLRPDTSATLTIAGSKGGKAPTETAANRAALAQKLQAIHADRPELPVMISADKNIKY 123 Query: 122 DDVVQVISEAKKQGIARVGLATK 144 D+V+Q ISEAKK GI RVGLATK Sbjct: 124 DEVIQAISEAKKLGIERVGLATK 146 >ref|YP_004754052.1| Tol biopolymer transport system, TolR protein [Collimonas fungivorans Ter331] gb|AEK63229.1| Tol biopolymer transport system, TolR protein [Collimonas fungivorans Ter331] Length = 144 Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 94/141 (66%), Positives = 114/141 (80%), Gaps = 1/141 (0%) Query: 4 SSMRGGRPRKFKSEINVVPYIDVMLVLLIIFMVATPITNPSVINLPTAGKSTQPPSDYIE 63 SSMRGGR RKFK++INVVPYIDVM+VLL+IFMV+ P+TNPSVINLP A KS PP++YIE Sbjct: 5 SSMRGGRTRKFKADINVVPYIDVMMVLLVIFMVSAPLTNPSVINLPNAAKSATPPTEYIE 64 Query: 64 IALKPNAQATIRINGPKSGGKKAETVTGKTDLSERLRKLHEDNPDLAVMISADKEIKYDD 123 I LKP ++RIN KSG KAE+V + L ++L+ LH D PD+ VMISADK+IKYD+ Sbjct: 65 ITLKPGDLTSVRINSQKSGTSKAESVP-RNGLKQKLQLLHADKPDMPVMISADKDIKYDE 123 Query: 124 VVQVISEAKKQGIARVGLATK 144 V++VISEAK GI RVGLATK Sbjct: 124 VIKVISEAKMLGINRVGLATK 144 >ref|YP_001100657.1| putative biopolymer transport protein ExbD/TolR; putative TOLR-related transport transmembrane protein [Herminiimonas arsenicoxydans] emb|CAL62536.1| Putative biopolymer transport protein [Herminiimonas arsenicoxydans] Length = 146 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 92/140 (65%), Positives = 110/140 (78%) Query: 5 SMRGGRPRKFKSEINVVPYIDVMLVLLIIFMVATPITNPSVINLPTAGKSTQPPSDYIEI 64 SMRGGR RKFKSEINVVPYIDVM+VLL+IFMV P+ NPS I LP A KST PP++YI I Sbjct: 7 SMRGGRNRKFKSEINVVPYIDVMMVLLVIFMVTAPMVNPSEIELPNAAKSTLPPTEYIRI 66 Query: 65 ALKPNAQATIRINGPKSGGKKAETVTGKTDLSERLRKLHEDNPDLAVMISADKEIKYDDV 124 LK +A AT+ + G K G K ETV + +L ++L+ L DNPD+AVMI+ADK IKYD+V Sbjct: 67 DLKADASATVSVQGKKGGAKPGETVATRGELGKKLQTLVADNPDIAVMIAADKNIKYDEV 126 Query: 125 VQVISEAKKQGIARVGLATK 144 +Q ISEAKK GI+RVGLATK Sbjct: 127 IQAISEAKKLGISRVGLATK 146 >ref|ZP_08274764.1| Tol biopolymer transport system, TolR protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF31766.1| Tol biopolymer transport system, TolR protein [Oxalobacteraceae bacterium IMCC9480] Length = 144 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 89/133 (66%), Positives = 109/133 (81%) Query: 12 RKFKSEINVVPYIDVMLVLLIIFMVATPITNPSVINLPTAGKSTQPPSDYIEIALKPNAQ 71 RKFK++INVVPYIDVMLVLL+IFMVA PITNP VINLPTA KS+ PPS+YI+I+LKP+A Sbjct: 11 RKFKADINVVPYIDVMLVLLVIFMVAAPITNPGVINLPTAEKSSLPPSEYIQISLKPDAA 70 Query: 72 ATIRINGPKSGGKKAETVTGKTDLSERLRKLHEDNPDLAVMISADKEIKYDDVVQVISEA 131 +TI ING K+ +T + + DL ERL+ LHE NPD+ VMIS DKE +Y++V+ +ISEA Sbjct: 71 STIGINGQKNTAANQQTTSSRKDLLERLKALHEANPDMPVMISGDKESRYEEVISLISEA 130 Query: 132 KKQGIARVGLATK 144 KK GI RVGLATK Sbjct: 131 KKFGITRVGLATK 143