BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0949.p (323 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774642.1| TolA-related transport transmembrane protein... 300 2e-79 ref|YP_001100658.1| putative tolA-related transport transmembran... 166 6e-39 ref|YP_004754053.1| putative tolA-related transport transmembran... 163 4e-38 ref|YP_001354156.1| TolA-related transport transmembrane protein... 157 2e-36 ref|YP_004126628.1| protein tola [Alicycliphilus denitrificans B... 112 8e-23 >ref|YP_003774642.1| TolA-related transport transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62734.1| TolA-related transport transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 318 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 276/323 (85%), Positives = 296/323 (91%), Gaps = 5/323 (1%) Query: 1 MSDNAHYTIPKPPGRWRAITLALVMHVALFLFFWIGIRWQSETPLTVEAEIWDPQYKEAA 60 MSDNA Y IPK PGRWRAITLALVMHVALFLFFWIGIRWQSETPLTVEAEIWDPQYKEAA Sbjct: 1 MSDNAPYNIPKAPGRWRAITLALVMHVALFLFFWIGIRWQSETPLTVEAEIWDPQYKEAA 60 Query: 61 PLPTPPQPQPEPDPVVEPPKPQPVIEPKTVAPKVIDEPKLDKPDIALQKEKEKKRKEEQE 120 PLPTPP+PQP+P P+PQP EPK V PKVIDEPK++KPDIALQKEKE+KRKEEQE Sbjct: 61 PLPTPPEPQPQPVVEPPKPQPQP--EPKPVPPKVIDEPKVEKPDIALQKEKERKRKEEQE 118 Query: 121 KQEKADKLKAEKEKAEREKKEQAEKDKADREKKEKLEAEKQKKLKEDKQKEEEAKKKADA 180 KQEK + EK + + +KE+AEK+KA+REKKEKLEA+KQKKLKE+KQKE+EAKKKADA Sbjct: 119 KQEKL---EKEKAEKLKAEKEKAEKEKAEREKKEKLEADKQKKLKEEKQKEDEAKKKADA 175 Query: 181 EKQAADKKKQQQAAADAKAAEARRQEDLKRMMGQATSATGGSGTAEKSQGPKGSPNYANK 240 EKQAADKKKQQQAAADAKAAEARRQEDLKRMMGQATSATGG+GTAEKSQGPKGSPNYANK Sbjct: 176 EKQAADKKKQQQAAADAKAAEARRQEDLKRMMGQATSATGGTGTAEKSQGPKGSPNYANK 235 Query: 241 LRAKIRTNTFFDTSGVSGNPAGEYTVELFPDGTVRSVRVNKSSGVPGFDDAVRTAIMKSQ 300 LRAKIR+NT FD SGVSGNPAGEYTVELFPDGTVRSVRVNK SGVPGFD+AVRTA+MKSQ Sbjct: 236 LRAKIRSNTVFDNSGVSGNPAGEYTVELFPDGTVRSVRVNKPSGVPGFDEAVRTAVMKSQ 295 Query: 301 PFPADTDGKVPSSFTFTHYPKDQ 323 PFP DTD KVPSSFTFTHYPKDQ Sbjct: 296 PFPPDTDNKVPSSFTFTHYPKDQ 318 >ref|YP_001100658.1| putative tolA-related transport transmembrane protein [Herminiimonas arsenicoxydans] emb|CAL62537.1| Conserved hypothetical protein, putative TonB domain [Herminiimonas arsenicoxydans] Length = 291 Score = 166 bits (419), Expect = 6e-39, Method: Composition-based stats. Identities = 150/330 (45%), Positives = 198/330 (60%), Gaps = 46/330 (13%) Query: 1 MSDNAHYTIPKPPGRWRAITLALVMHVALFLFFWIGIRWQSETPLTVEAEIWDPQYK--- 57 M++++ Y +PK PGRWRAITLA +HVAL +FFWIGI WQSETP+ V+AEIWD Q K Sbjct: 1 MTEHSPYIVPKEPGRWRAITLAAAVHVALLVFFWIGIDWQSETPVAVKAEIWDMQAKEAA 60 Query: 58 --EAAPLPTPPQPQPEPDPVVEPPKPQPVIEPKTVAPKVIDEPKLDKPDIALQKEKEKKR 115 P P P V E PK +PV P PKV DIAL+KEK++K Sbjct: 61 PLPPEPEPVPQPKPEPKPVVKETPKAEPVAPP---PPKV---------DIALEKEKKRKE 108 Query: 116 KEEQEKQEKADKLKAEKEKAEREKKEQAEKDKADREKKEKLEAEKQKKLKEDKQKEEEAK 175 +E +++ + K K K+KAE LE +++ K +E ++K+ E + Sbjct: 109 QERKDQLAEEAKEKKLKQKAE-------------------LEKQEKLKEQEAEKKKAEQQ 149 Query: 176 KKADAEKQAADKKKQQQAAADAKAAEARRQEDLKRMMGQATSATGGSGTAEKSQGP-KGS 234 KKADA+ KK+ Q DA+ +E RR E+L R+ G S GG+G A KSQG + Sbjct: 150 KKADAD------KKRLQDQRDAELSEKRRAEELSRLTGAIGS--GGTGQAAKSQGSGRAD 201 Query: 235 PNYANKLRAKIRTNTFFDT-SGVSGNPAGEYTVELFPDGTVRSVRVNKSSGVPGFDDAVR 293 YA+K+RAKIR+NT F+ +SGNP EY VEL PDG++R +R+ KSSG+PGFD+AV+ Sbjct: 202 GAYADKIRAKIRSNTIFNVPPELSGNPQVEYDVELLPDGSLRGLRLRKSSGLPGFDEAVK 261 Query: 294 TAIMKSQPFPADTDGKVPSSFTFTHYPKDQ 323 AI +SQPFP D G VP T H PKDQ Sbjct: 262 RAIERSQPFPPDQSGSVPGRLTVVHKPKDQ 291 >ref|YP_004754053.1| putative tolA-related transport transmembrane protein [Collimonas fungivorans Ter331] gb|AEK63230.1| putative tolA-related transport transmembrane protein [Collimonas fungivorans Ter331] Length = 323 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 153/326 (46%), Positives = 212/326 (65%), Gaps = 21/326 (6%) Query: 1 MSDNAHYTIPKPPGRWRAITLALVMHVALFLFFWIGIRWQSETPLTVEAEIWDPQYKEAA 60 M+ N+ Y++PK PG RAI LA +H ALF F W GI WQS P+ VEAE+WDPQ K+AA Sbjct: 16 MTGNSPYSVPKEPGSIRAILLAAAVHAALFAFLWFGIHWQSTQPIAVEAEVWDPQIKDAA 75 Query: 61 PLPTPPQPQPEPDPVVEPPKPQPVIEPKTVAPKVIDEPKLDKPDIALQKEKEKKRKEEQE 120 P P P PQP PKP+PVI+ T PKV+ P L P+IAL++EK++K +E ++ Sbjct: 76 PTPPEPVPQPT-----PEPKPEPVIQ-DTTPPKVV-APPLPDPEIALEQEKKRKEQERKD 128 Query: 121 KQEKADKLKAEKEKAEREKKEQAEKDKADREKKEKLEAEKQKKLKEDKQKEEEAKKKADA 180 Q + E EK+ + +K + ++E+K+KL+AE ++K + + K+K DA Sbjct: 129 LQ----------RQEELEKQRKLQKQQDEQEQKDKLKAEAEQK-AAKDKAAAQEKQKLDA 177 Query: 181 EKQAADKKKQQQAAADAKAAEARRQEDLKRMMGQA--TSATGGSGTAEKSQGPKGSPNYA 238 K+ K++QAAA+A A RR +++KRM+GQA +GTA +SQGP+G P YA Sbjct: 178 AKKTEADAKKKQAAAEAAAETKRRSDEMKRMLGQAVGNGPANSTGTAAQSQGPRGDPGYA 237 Query: 239 NKLRAKIRTNTFFDT-SGVSGNPAGEYTVELFPDGTVRSVRVNKSSGVPGFDDAVRTAIM 297 K+ +KI++N F+ G++GNPA E+ V+L PDG+V SVR+ KSSGV GFD+AV+ AI Sbjct: 238 QKVASKIKSNIIFNVPEGLAGNPAAEFDVQLLPDGSVASVRLRKSSGVSGFDEAVKRAIE 297 Query: 298 KSQPFPADTDGKVPSSFTFTHYPKDQ 323 KS P+P D G VPSSF TH PKDQ Sbjct: 298 KSAPYPKDKTGSVPSSFIGTHKPKDQ 323 >ref|YP_001354156.1| TolA-related transport transmembrane protein [Janthinobacterium sp. Marseille] gb|ABR91140.1| TolA-related transport transmembrane protein [Janthinobacterium sp. Marseille] Length = 292 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 153/331 (46%), Positives = 205/331 (61%), Gaps = 47/331 (14%) Query: 1 MSDNAHYTIPKPPGRWRAITLALVMHVALFLFFWIGIRWQSETPLTVEAEIWDPQYKEAA 60 M+D Y++PK PGRWRAITLA +H AL +FFWIGI WQ+ETP+ V+AEIWD Q KEAA Sbjct: 1 MTDTTPYSVPKEPGRWRAITLAAAVHAALLVFFWIGIDWQNETPVAVQAEIWDMQAKEAA 60 Query: 61 PLPTPPQPQPEPDP-----VVEPPKPQPVIEPKTVAPKVIDEPKLDKPDIALQKEKEKKR 115 PLP P+P P+P P + E PK +PV EP K DIAL++EK++K Sbjct: 61 PLPPEPEPTPQPKPEPKPIIKETPKAEPV------------EPPAPKVDIALEREKKRKE 108 Query: 116 KEEQEKQEKADKLKAEKEKAEREKKEQAEKDKADREKKEKLEAEKQKKLKEDKQKEEEAK 175 +E ++K + +K K K++AE++K+++ +K AD K Sbjct: 109 QERKDKLAEEEKEKKLKQQAEQDKQQKLDKQAAD-------------------------K 143 Query: 176 KKADAEKQAADKKKQQQAAADAKAAEARRQEDLKRMMGQATSATGGSGTAEKSQGP-KGS 234 K A+ +++A +KK++Q AADA + R E+++R+ G S GG+G A KSQG + Sbjct: 144 KAAEQQQKADLEKKRKQEAADAAVRDKIRAEEMRRLTGAVGS--GGTGEAAKSQGSGRAD 201 Query: 235 PNYANKLRAKIRTN-TFFDTSGVSGNPAGEYTVELFPDGTVR-SVRVNKSSGVPGFDDAV 292 YA+K+RAKIR N TF G+SGNPA E+ VEL PDG++R R+ KSSGV GFDDAV Sbjct: 202 SGYADKIRAKIRQNTTFIVPDGLSGNPAAEFDVELLPDGSLRGEPRLRKSSGVTGFDDAV 261 Query: 293 RTAIMKSQPFPADTDGKVPSSFTFTHYPKDQ 323 + AI +SQPFP D G VPS F H PKDQ Sbjct: 262 KRAIERSQPFPPDKSGTVPSRFIVVHKPKDQ 292 >ref|YP_004126628.1| protein tola [Alicycliphilus denitrificans BC] gb|ADU99740.1| protein TolA [Alicycliphilus denitrificans BC] Length = 320 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 119/326 (36%), Positives = 185/326 (56%), Gaps = 15/326 (4%) Query: 2 SDNAHYTIPKPPGRWRAITLALVMHVALFLFFWIGIRWQSETPL-TVEAEIWD--PQYKE 58 +D + P+PPGR RAI LA++ H L G+ W+S VEAE+W PQ Sbjct: 5 NDRDQFAPPRPPGRMRAIALAVLAHAILIGALTWGVNWKSSADQPAVEAELWAAVPQQAA 64 Query: 59 AAPLPTPPQPQPEPDPVVEPPKPQPVIEPKTVAPKVIDEPKLDKPDIALQKEKEKKRKEE 118 PP P+PEP+P P P P P D + DIALQK+K+++ + + Sbjct: 65 PRAAEPPPPPEPEPEPQPTPAPPPPPPPPPPPRQAEPDT---HEADIALQKQKKREEELK 121 Query: 119 QEKQEKADKLKAEKEKAEREKKEQAEKDKADREKKEKLEAEKQKKLKEDKQKEEEAKKKA 178 ++++++ ++ K +KE+ ER ++E+ E+ A ++K E +AE+ KKL E K+ E++ KA Sbjct: 122 KKREQQLEQEKKDKERRERLEQEKKERQLA-QQKAEHEKAERAKKLAEQKRLEQQ---KA 177 Query: 179 DAEKQAADKKKQQQAAADAKAAEARRQEDLKRMMGQATSATG--GSGTAEKSQGPKGSPN 236 + EKQ +++++A +AK AE R++ ++R+ G A + G +GTA++S GP GS Sbjct: 178 EQEKQKKLAEEKRKAELEAKRAEEFRKDQMRRIAGLAGATGGETATGTAQRSAGPSGS-- 235 Query: 237 YANKLRAKIRTNTFFDTSGVSGNPAGEYTVELFPDGTVRSVRVNKSSGVPGFDDAVRTAI 296 YA K+ AK++ N + V GNP E V PDGT+ R+ SSG +DDAV A+ Sbjct: 236 YAGKVAAKVKPNIVY-PDLVEGNPRAEVEVRAAPDGTIVGTRILHSSGNKAWDDAVIRAL 294 Query: 297 MKSQPFPADTDGKVPSSFTFTHYPKD 322 +++ P D DG+VPSS PKD Sbjct: 295 QRTETLPRDVDGRVPSSLVIGFRPKD 320