BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0948.p (432 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774641.1| periplasmic component of the Tol biopolymer ... 764 0.0 ref|YP_004754054.1| periplasmic protein involved in uptake [Coll... 613 e-173 ref|YP_001354157.1| periplasmic component of the Tol biopolymer ... 611 e-173 ref|YP_001100659.1| TolB periplasmic protein [Herminiimonas arse... 603 e-170 ref|ZP_08273698.1| tolB protein precursor [Oxalobacteraceae bact... 598 e-169 >ref|YP_003774641.1| periplasmic component of the Tol biopolymer transport system protein [Herbaspirillum seropedicae SmR1] gb|ADJ62733.1| periplasmic component of the Tol biopolymer transport system protein [Herbaspirillum seropedicae SmR1] Length = 428 Score = 764 bits (1972), Expect = 0.0, Method: Composition-based stats. Identities = 413/432 (95%), Positives = 419/432 (96%), Gaps = 4/432 (0%) Query: 1 MIKARYLTLSLTRMATAMVAVAGLSFAPASQAQIRFEITGVGASQIPVAIAAFPGEESAP 60 MIKARYLT +A AVAGLSFAPASQAQIRFEITGVGASQIP+AI AFPGEESAP Sbjct: 1 MIKARYLT----SLAATAAAVAGLSFAPASQAQIRFEITGVGASQIPIAITAFPGEESAP 56 Query: 61 QQITSVVKADLARSGIFKLIDNSDALSDSSAINYADWQKRGANALAVGSVTRLADGRFDV 120 QQITSVVKADLARSG+FKLIDN DALSDSSA+NYADWQKRGANALAVGSVTRLADGRFDV Sbjct: 57 QQITSVVKADLARSGVFKLIDNGDALSDSSAVNYADWQKRGANALAVGSVTRLADGRFDV 116 Query: 121 RYRLFDTVQSSQLSALSIGAQPQLLRLTAHKIADDIYQKLTGIPGIFSTRISYVTKSGNE 180 RYRLFDTVQSSQLSALSIGAQPQLLRLTAHKIADDIYQKLTGIPGIFSTRISYVTKSG E Sbjct: 117 RYRLFDTVQSSQLSALSIGAQPQLLRLTAHKIADDIYQKLTGIPGIFSTRISYVTKSGGE 176 Query: 181 YRLEVADADGEGTQVALRSNEPIISPSWSPDGTKVAYVSFEMKKPVVYIQNLVTRQRSIV 240 YRLEVADADGEGTQVALRSNEPIISPSWSPDGTKVAYVSFEMKKPVVYIQNLVTRQRSIV Sbjct: 177 YRLEVADADGEGTQVALRSNEPIISPSWSPDGTKVAYVSFEMKKPVVYIQNLVTRQRSIV 236 Query: 241 ANFKGSNSAPAWSPDGSRLAVALTRDGLTQVYVINADGSGLRRLTNSAGIDTEPQFSPDG 300 ANFKGSNSAPAWSPDGSRLAVALTRDGLTQVYVINADGSGLRRLTNSAGIDTEPQFSPDG Sbjct: 237 ANFKGSNSAPAWSPDGSRLAVALTRDGLTQVYVINADGSGLRRLTNSAGIDTEPQFSPDG 296 Query: 301 GSVYFTSDRSGGPQVYKVGLDGGSPQRVTFNGSYNISPRISPDGKTLAFISRRDGLFQLY 360 GS+YFTSDRSGGPQVYKVGLDGGSPQRVTFNGSYNISPRISPDGKTLAFISRRDG FQLY Sbjct: 297 GSIYFTSDRSGGPQVYKVGLDGGSPQRVTFNGSYNISPRISPDGKTLAFISRRDGQFQLY 356 Query: 361 ALDLTNGQEIRLSDGSRDQSPSFAPNGKYIMYATESGRRGSLAVVSVDGRIKQRLTTQAG 420 ALDLTNGQEIRLSDGSRDQSPSFAPNGKYIMYATE+GRRGSLAVVSVDGRIKQRLTTQAG Sbjct: 357 ALDLTNGQEIRLSDGSRDQSPSFAPNGKYIMYATEAGRRGSLAVVSVDGRIKQRLTTQAG 416 Query: 421 DIREPTWGPFMK 432 DIREPTWGPFMK Sbjct: 417 DIREPTWGPFMK 428 >ref|YP_004754054.1| periplasmic protein involved in uptake [Collimonas fungivorans Ter331] gb|AEK63231.1| periplasmic protein involved in uptake [Collimonas fungivorans Ter331] Length = 427 Score = 613 bits (1582), Expect = e-173, Method: Composition-based stats. Identities = 308/418 (73%), Positives = 363/418 (86%) Query: 15 ATAMVAVAGLSFAPASQAQIRFEITGVGASQIPVAIAAFPGEESAPQQITSVVKADLARS 74 A + +A ++F+ + AQ+R E +GVGASQIP+AIA F E+ APQQ+T+++KADLARS Sbjct: 10 AAVGLVLATVAFSAPANAQLRIETSGVGASQIPIAIAGFSNEDLAPQQVTAIIKADLARS 69 Query: 75 GIFKLIDNSDALSDSSAINYADWQKRGANALAVGSVTRLADGRFDVRYRLFDTVQSSQLS 134 G FK+ID D +S++S +N DW+ RGA+AL VGSV RLADGRFDVRYRL DTV+S+QLS Sbjct: 70 GFFKIIDTGDVISEASQVNLGDWKARGADALVVGSVQRLADGRFDVRYRLMDTVKSAQLS 129 Query: 135 ALSIGAQPQLLRLTAHKIADDIYQKLTGIPGIFSTRISYVTKSGNEYRLEVADADGEGTQ 194 AL++ A PQ R+TAHKIADDIY+KL G G F+TRI+Y+ K+G EYRLEVAD+DGEGTQ Sbjct: 130 ALAMAAAPQYTRVTAHKIADDIYEKLIGARGAFATRIAYIIKAGKEYRLEVADSDGEGTQ 189 Query: 195 VALRSNEPIISPSWSPDGTKVAYVSFEMKKPVVYIQNLVTRQRSIVANFKGSNSAPAWSP 254 VALRSNEPIISP+WSPDGTKVAYVSFE KKPVVY+QNL+T+QR +VAN+KGSNSAP+WSP Sbjct: 190 VALRSNEPIISPAWSPDGTKVAYVSFEAKKPVVYVQNLITKQRIVVANYKGSNSAPSWSP 249 Query: 255 DGSRLAVALTRDGLTQVYVINADGSGLRRLTNSAGIDTEPQFSPDGGSVYFTSDRSGGPQ 314 DGS+LA+AL RDGLTQVYV+N+DG GLRRLT + GIDTEPQFS DG ++YFTSDRSGGPQ Sbjct: 250 DGSKLAIALARDGLTQVYVVNSDGGGLRRLTQTNGIDTEPQFSADGQNIYFTSDRSGGPQ 309 Query: 315 VYKVGLDGGSPQRVTFNGSYNISPRISPDGKTLAFISRRDGLFQLYALDLTNGQEIRLSD 374 +YK+ GG QRVTF G+YNISPRISPDGKTLA+IS+R G FQLYALDLTNGQE RLSD Sbjct: 310 IYKMSASGGDAQRVTFGGTYNISPRISPDGKTLAYISQRGGRFQLYALDLTNGQEQRLSD 369 Query: 375 GSRDQSPSFAPNGKYIMYATESGRRGSLAVVSVDGRIKQRLTTQAGDIREPTWGPFMK 432 +D+SPSF+PNGKYIMYATESGRRGSLAVVSVDGR+KQRLT QAGDIREPTWGPFMK Sbjct: 370 TVKDESPSFSPNGKYIMYATESGRRGSLAVVSVDGRVKQRLTMQAGDIREPTWGPFMK 427 >ref|YP_001354157.1| periplasmic component of the Tol biopolymer transport system [Janthinobacterium sp. Marseille] gb|ABR89291.1| periplasmic component of the Tol biopolymer transport system [Janthinobacterium sp. Marseille] Length = 423 Score = 611 bits (1575), Expect = e-173, Method: Composition-based stats. Identities = 302/413 (73%), Positives = 367/413 (88%) Query: 20 AVAGLSFAPASQAQIRFEITGVGASQIPVAIAAFPGEESAPQQITSVVKADLARSGIFKL 79 AV L + AQ+R EI GVGA+QIPVAIAAF E APQQ+++++KADL RSG FK+ Sbjct: 11 AVMALFITTLAHAQLRVEIAGVGANQIPVAIAAFGDETLAPQQVSAIIKADLLRSGFFKI 70 Query: 80 IDNSDALSDSSAINYADWQKRGANALAVGSVTRLADGRFDVRYRLFDTVQSSQLSALSIG 139 ID L+++S +N ADW+ RGA+A+ VGSV +LADGR++VRYRLFDTV+ +QLS+L++ Sbjct: 71 IDTGGVLTENSQLNLADWKSRGADAIVVGSVLKLADGRYEVRYRLFDTVKGTQLSSLALA 130 Query: 140 AQPQLLRLTAHKIADDIYQKLTGIPGIFSTRISYVTKSGNEYRLEVADADGEGTQVALRS 199 +QPQ LR++AHK+ADD+Y+KLTGI G F+TRI+YVTKS E+RLE+AD+DGEGTQVALRS Sbjct: 131 SQPQFLRVSAHKVADDVYEKLTGIKGAFATRIAYVTKSPKEFRLEIADSDGEGTQVALRS 190 Query: 200 NEPIISPSWSPDGTKVAYVSFEMKKPVVYIQNLVTRQRSIVANFKGSNSAPAWSPDGSRL 259 NEPIISPSWSPDGTKVAYVSFE KKPVVYIQ+LV+R+R++ ANFKGSNSAP+W+PDG+RL Sbjct: 191 NEPIISPSWSPDGTKVAYVSFENKKPVVYIQDLVSRKRTVAANFKGSNSAPSWAPDGNRL 250 Query: 260 AVALTRDGLTQVYVINADGSGLRRLTNSAGIDTEPQFSPDGGSVYFTSDRSGGPQVYKVG 319 AVAL+RDGLTQVYV+NADG+GLRRL++S GIDTEPQFS DG S++FTSDRSGGPQ+YK+G Sbjct: 251 AVALSRDGLTQVYVVNADGTGLRRLSSSNGIDTEPQFSADGQSIFFTSDRSGGPQIYKMG 310 Query: 320 LDGGSPQRVTFNGSYNISPRISPDGKTLAFISRRDGLFQLYALDLTNGQEIRLSDGSRDQ 379 +GG +RVTF+GSYNISPRISPDGK LA+ISRR+G FQL+ LDLTNGQE RLSD +D+ Sbjct: 311 ANGGEARRVTFSGSYNISPRISPDGKYLAYISRREGKFQLFLLDLTNGQEQRLSDTVKDE 370 Query: 380 SPSFAPNGKYIMYATESGRRGSLAVVSVDGRIKQRLTTQAGDIREPTWGPFMK 432 SPSF+PNGKY+MYATESGRRG+LAVVSVDG++KQRLTTQAGDIREPTWGPFMK Sbjct: 371 SPSFSPNGKYLMYATESGRRGTLAVVSVDGQVKQRLTTQAGDIREPTWGPFMK 423 >ref|YP_001100659.1| TolB periplasmic protein [Herminiimonas arsenicoxydans] emb|CAL62538.1| Protein TolB precursor [Herminiimonas arsenicoxydans] Length = 423 Score = 603 bits (1556), Expect = e-170, Method: Composition-based stats. Identities = 299/413 (72%), Positives = 362/413 (87%) Query: 20 AVAGLSFAPASQAQIRFEITGVGASQIPVAIAAFPGEESAPQQITSVVKADLARSGIFKL 79 A+ L + AQ+R EI GVGA+QIP+AIAAF E AP Q+++++KADL RSG FK+ Sbjct: 11 AILALFVTSLAHAQLRVEIAGVGANQIPIAIAAFGDESIAPHQVSAIIKADLLRSGYFKV 70 Query: 80 IDNSDALSDSSAINYADWQKRGANALAVGSVTRLADGRFDVRYRLFDTVQSSQLSALSIG 139 ID L+++S +N ADW+ RGA+AL VGSV+RL DGRFDV+YRLFDT++ +QLS+L++ Sbjct: 71 IDTGTVLTENSQVNLADWKSRGADALVVGSVSRLPDGRFDVKYRLFDTIKQAQLSSLALA 130 Query: 140 AQPQLLRLTAHKIADDIYQKLTGIPGIFSTRISYVTKSGNEYRLEVADADGEGTQVALRS 199 QPQ +R++AHKIADDIY+KLTGI G F+TRI+YVTK+G E+RLE+AD+DGEGTQVALRS Sbjct: 131 NQPQFIRVSAHKIADDIYEKLTGIRGAFATRIAYVTKAGKEFRLEIADSDGEGTQVALRS 190 Query: 200 NEPIISPSWSPDGTKVAYVSFEMKKPVVYIQNLVTRQRSIVANFKGSNSAPAWSPDGSRL 259 NEPIISP+WSPDGTKVAYVSFE KKPVVYIQ+LV+R+R++ ANFKGSNSAP+WSPDGSRL Sbjct: 191 NEPIISPAWSPDGTKVAYVSFENKKPVVYIQDLVSRKRTVAANFKGSNSAPSWSPDGSRL 250 Query: 260 AVALTRDGLTQVYVINADGSGLRRLTNSAGIDTEPQFSPDGGSVYFTSDRSGGPQVYKVG 319 AVAL+RDGLTQVYV+NADG+ RRL+NS GIDTEPQ+S DG S+YFTSDRSGGPQ+YK+G Sbjct: 251 AVALSRDGLTQVYVVNADGTNPRRLSNSNGIDTEPQYSADGQSIYFTSDRSGGPQIYKMG 310 Query: 320 LDGGSPQRVTFNGSYNISPRISPDGKTLAFISRRDGLFQLYALDLTNGQEIRLSDGSRDQ 379 +GG +RVTF GSYNISPRISPDGK LA+ISRR+G FQL+ LDL NGQE RLSD +D+ Sbjct: 311 SNGGEARRVTFAGSYNISPRISPDGKFLAYISRREGKFQLFILDLNNGQEQRLSDTVKDE 370 Query: 380 SPSFAPNGKYIMYATESGRRGSLAVVSVDGRIKQRLTTQAGDIREPTWGPFMK 432 SPSF+PNGKY+MYATESGRRG+LAVVSVDG++KQRLTTQ+GDIREPTWGPFMK Sbjct: 371 SPSFSPNGKYLMYATESGRRGTLAVVSVDGQVKQRLTTQSGDIREPTWGPFMK 423 >ref|ZP_08273698.1| tolB protein precursor [Oxalobacteraceae bacterium IMCC9480] gb|EGF32832.1| tolB protein precursor [Oxalobacteraceae bacterium IMCC9480] Length = 421 Score = 598 bits (1541), Expect = e-169, Method: Composition-based stats. Identities = 304/416 (73%), Positives = 363/416 (87%), Gaps = 1/416 (0%) Query: 17 AMVAVAGLSFAPASQAQIRFEITGVGASQIPVAIAAFPGEESAPQQITSVVKADLARSGI 76 + +A+ GL A A+ AQ+R +I GVGA+QIP+AIA F E AP Q+++++KADL RSG Sbjct: 7 STLALLGLVLATAAHAQLRVDIAGVGANQIPIAIATFADESIAPAQVSAIIKADLMRSGY 66 Query: 77 FKLIDNSDALSDSSAINYADWQKRGANALAVGSVTRLADGRFDVRYRLFDTVQSSQLSAL 136 FK+ID + +S++S INY DW+ RGA+AL VGSV RLADGRFDVRY+L D ++S+ LSAL Sbjct: 67 FKIID-AGTMSETSEINYPDWKSRGADALVVGSVQRLADGRFDVRYKLLDMIKSAPLSAL 125 Query: 137 SIGAQPQLLRLTAHKIADDIYQKLTGIPGIFSTRISYVTKSGNEYRLEVADADGEGTQVA 196 S+ A R+TAHKIADDIY+KLTG+ G F+TRI+YVTKSG EYRLEVADADGE T VA Sbjct: 126 SLTAPEGRTRVTAHKIADDIYEKLTGVRGAFATRIAYVTKSGKEYRLEVADADGEDTNVA 185 Query: 197 LRSNEPIISPSWSPDGTKVAYVSFEMKKPVVYIQNLVTRQRSIVANFKGSNSAPAWSPDG 256 LRSNEPIISP+WSPDGT+VAYVSFE KKPVVY+QNLVTRQR+++AN+KGSNSAP+WSPDG Sbjct: 186 LRSNEPIISPAWSPDGTRVAYVSFENKKPVVYVQNLVTRQRTVLANYKGSNSAPSWSPDG 245 Query: 257 SRLAVALTRDGLTQVYVINADGSGLRRLTNSAGIDTEPQFSPDGGSVYFTSDRSGGPQVY 316 +RLA+AL+RDGLTQ Y++NADG+GLRRLT+S+GIDTEPQFS DG S+YFTSDRSGGPQ+Y Sbjct: 246 NRLAIALSRDGLTQSYIVNADGTGLRRLTSSSGIDTEPQFSADGQSIYFTSDRSGGPQIY 305 Query: 317 KVGLDGGSPQRVTFNGSYNISPRISPDGKTLAFISRRDGLFQLYALDLTNGQEIRLSDGS 376 K+ + GG QRVTF GSYNISPR+SPDGKTLA+ISRRD FQLYA+DL NGQE RLSD + Sbjct: 306 KMPVSGGDAQRVTFKGSYNISPRVSPDGKTLAYISRRDSAFQLYAMDLANGQEQRLSDSA 365 Query: 377 RDQSPSFAPNGKYIMYATESGRRGSLAVVSVDGRIKQRLTTQAGDIREPTWGPFMK 432 +D+SPSF+PN KYIMYATESGRRGSLAVVSVDGR+KQRLTTQAGDIREPTWGPF+K Sbjct: 366 KDESPSFSPNSKYIMYATESGRRGSLAVVSVDGRVKQRLTTQAGDIREPTWGPFIK 421