BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0944.p         (139 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_02375874.1| hypothetical protein BthaT_32948 [Burkholderi...   178   3e-43
ref|YP_999422.1| hypothetical protein Veis_4707 [Verminephrobact...   169   1e-40
ref|ZP_05136691.1| conserved hypothetical protein [Stenotrophomo...   145   3e-33
ref|YP_004794240.1| hypothetical protein BurJV3_3701 [Burkholder...   139   1e-31
gb|EDZ40202.1| Hypothetical protein CGL2_10641002 [Leptospirillu...   138   2e-31

>ref|ZP_02375874.1| hypothetical protein BthaT_32948 [Burkholderia thailandensis TXDOH]
          Length = 127

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 88/127 (69%), Positives = 109/127 (85%)

Query: 4   IRRVFKTRYFQRWMRKTGMFDAALCKAVLEMEAGLIEADLGGGLFKKRVALPGRGKRAGA 63
           ++RVFKTR+FQRWMRK+G+ DAALC+AV EM AGLI+ADLGGG+ KKRV L GRGKR GA
Sbjct: 1   MKRVFKTRHFQRWMRKSGLTDAALCEAVEEMVAGLIDADLGGGVVKKRVGLSGRGKRGGA 60

Query: 64  RTLLATNRRNRWFFVFGFEKNVCSNISDTELEALQMLATDLLSQTDSQLDLAITEGSVQE 123
           RTL+ATN+  RWFF+FGFEKN  SNISD+EL+ALQ LA DLL++T  QLDLA+ +G++QE
Sbjct: 61  RTLIATNKGTRWFFMFGFEKNERSNISDSELDALQSLAADLLARTSGQLDLAVADGTLQE 120

Query: 124 ICNDNDS 130
           IC+ + S
Sbjct: 121 ICHGDQS 127


>ref|YP_999422.1| hypothetical protein Veis_4707 [Verminephrobacter eiseniae EF01-2]
 gb|ABM60404.1| protein of unknown function DUF1044 [Verminephrobacter eiseniae
           EF01-2]
          Length = 123

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 86/120 (71%), Positives = 100/120 (83%)

Query: 6   RVFKTRYFQRWMRKTGMFDAALCKAVLEMEAGLIEADLGGGLFKKRVALPGRGKRAGART 65
           RVFKTR+FQRWMRKT + DAALCKAV EM  G I+ADLGGG+ KKRV L GRGKR GART
Sbjct: 3   RVFKTRHFQRWMRKTELTDAALCKAVEEMAGGSIDADLGGGVVKKRVGLAGRGKRGGART 62

Query: 66  LLATNRRNRWFFVFGFEKNVCSNISDTELEALQMLATDLLSQTDSQLDLAITEGSVQEIC 125
           L+ATN+ NRWFFVFGFEKN  +NISD ELE LQ +ATDLL++T  QLD A+ +G++QEIC
Sbjct: 63  LVATNKGNRWFFVFGFEKNDRANISDEELEGLQTIATDLLARTGKQLDEAVADGTLQEIC 122


>ref|ZP_05136691.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14]
 gb|EED40752.1| conserved hypothetical protein [Stenotrophomonas sp. SKA14]
          Length = 129

 Score =  145 bits (365), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 70/121 (57%), Positives = 93/121 (76%)

Query: 6   RVFKTRYFQRWMRKTGMFDAALCKAVLEMEAGLIEADLGGGLFKKRVALPGRGKRAGART 65
           RVF+TR F R MR+T + DAALC++V EMEAGL++ADLGGGLFKKRVALPGRGKR   RT
Sbjct: 5   RVFRTRSFNRSMRRTVLSDAALCQSVREMEAGLVDADLGGGLFKKRVALPGRGKRGSVRT 64

Query: 66  LLATNRRNRWFFVFGFEKNVCSNISDTELEALQMLATDLLSQTDSQLDLAITEGSVQEIC 125
           ++AT R   WFF+FG+EKN  + I++ E +ALQ+ A++ L  + +QL  A+  G +QEIC
Sbjct: 65  IVATQRGGHWFFLFGYEKNERAAITNAERDALQLYASEFLKMSPAQLKRAVEYGDLQEIC 124

Query: 126 N 126
           +
Sbjct: 125 H 125


>ref|YP_004794240.1| hypothetical protein BurJV3_3701 [Burkholderia sp. JV3]
 gb|AEM53014.1| protein of unknown function DUF1044 [Burkholderia sp. JV3]
          Length = 127

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/124 (54%), Positives = 93/124 (75%)

Query: 6   RVFKTRYFQRWMRKTGMFDAALCKAVLEMEAGLIEADLGGGLFKKRVALPGRGKRAGART 65
           RVF+TR F R MR+T + DAAL ++V EMEAGL++ADLGGG+ KKRVALPGRGKR   RT
Sbjct: 3   RVFRTRSFNRSMRRTTLSDAALYRSVREMEAGLVDADLGGGILKKRVALPGRGKRGSVRT 62

Query: 66  LLATNRRNRWFFVFGFEKNVCSNISDTELEALQMLATDLLSQTDSQLDLAITEGSVQEIC 125
           ++AT R   WFF+FG+EKN  + I++ E +ALQ+ A++ L  + +QL+ A+  G +QEI 
Sbjct: 63  IVATQRGGHWFFLFGYEKNERAAITNAERDALQLYASEFLKMSTAQLNRAVQYGDLQEIS 122

Query: 126 NDND 129
           +D D
Sbjct: 123 HDED 126


>gb|EDZ40202.1| Hypothetical protein CGL2_10641002 [Leptospirillum sp. Group II
           '5-way CG']
          Length = 130

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/124 (54%), Positives = 88/124 (70%)

Query: 4   IRRVFKTRYFQRWMRKTGMFDAALCKAVLEMEAGLIEADLGGGLFKKRVALPGRGKRAGA 63
           ++R+   R F RW  K G+ D AL KAV EME GLI+ADLGG + KKRVALPGRGKR G 
Sbjct: 1   MKRILLLRTFMRWKEKNGLSDQALAKAVDEMEQGLIDADLGGCVLKKRVALPGRGKRGGV 60

Query: 64  RTLLATNRRNRWFFVFGFEKNVCSNISDTELEALQMLATDLLSQTDSQLDLAITEGSVQE 123
           R ++AT + +RWFF++GF KN  +NISD ELE  Q +A DLL   D Q+DLA++EG   E
Sbjct: 61  RVIVATKKVDRWFFLYGFGKNERNNISDKELEIFQEMAVDLLKLNDRQVDLALSEGEFVE 120

Query: 124 ICND 127
           + ++
Sbjct: 121 VAHE 124