BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0943.p         (220 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004237166.1| hypothetical protein Acav_4721 [Acidovorax a...   126   2e-27
ref|YP_747582.1| hypothetical protein Neut_1369 [Nitrosomonas eu...    68   7e-10
ref|NP_418944.1| hypothetical protein CC_0125 [Caulobacter cresc...    62   6e-08
ref|YP_002128781.1| hypothetical protein PHZ_p0263 [Phenylobacte...    61   1e-07
ref|ZP_05109156.1| hypothetical protein LDG_1004 [Legionella dra...    61   1e-07

>ref|YP_004237166.1| hypothetical protein Acav_4721 [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gb|ADX48599.1| hypothetical protein Acav_4721 [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 205

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/172 (41%), Positives = 102/172 (59%), Gaps = 4/172 (2%)

Query: 23  CATAYGPRGLTGGYTDAKLADDLYRVTFSGNGKTSRDMVWHYWIYRCAELTQQQGYSHFI 82
           C T Y  +G+ GGYTD K+ +  YRV F GNG TS D VW++W+YRCAELT+++GY+HF 
Sbjct: 19  CTTPYARKGMAGGYTDEKIDETHYRVKFDGNGNTSADRVWNFWVYRCAELTREKGYTHFT 78

Query: 83  ILKPSDPVPKPVAPPMTNTSWQSDPQDGND-PLARLTPTATHAAPIYIYTPG--TPIITY 139
           + KP++P+    AP  +  + Q     G D    R+  T    API+IYTPG    + T+
Sbjct: 79  VRKPNEPLAGGPAPQRSIPAIQPAGYAGTDGEQPRMLKTKGGGAPIFIYTPGTTVTVTTW 138

Query: 140 SGNAVVKMLRKPAEYPGQAVLSAEVVLRLIGPYVKSAGQSPAPPEQDVIKSA 191
             +AV+ + R P       VL A VVL  + PYV+S G+  AP   ++++ A
Sbjct: 139 HNDAVIALYRDPLP-EAVMVLEARVVLEQLAPYVQSDGRDAAPARDELLRKA 189


>ref|YP_747582.1| hypothetical protein Neut_1369 [Nitrosomonas eutropha C91]
 gb|ABI59617.1| conserved hypothetical protein; putative conserved domain
          [Nitrosomonas eutropha C91]
          Length = 166

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 1/77 (1%)

Query: 8  RGVAGIVLAAAMLAGCATAYGPRGLTGGYTDAKLADDLYRVTFSGNGKTSRDMVWHYWIY 67
          R +A I L  A LAGCA+AY P+G  GG+++ +L  +++RV+F GNG T  +      + 
Sbjct: 2  RNIALITLVLA-LAGCASAYKPKGFGGGFSETQLDTNVFRVSFRGNGYTRAERAEELALL 60

Query: 68 RCAELTQQQGYSHFIIL 84
          R AELT + G++HF I+
Sbjct: 61 RSAELTLKNGFTHFAII 77


>ref|NP_418944.1| hypothetical protein CC_0125 [Caulobacter crescentus CB15]
 ref|YP_002515499.1| hypothetical protein CCNA_00124 [Caulobacter crescentus NA1000]
 gb|AAK22112.1| hypothetical protein CC_0125 [Caulobacter crescentus CB15]
 gb|ACL93591.1| conserved hypothetical protein [Caulobacter crescentus NA1000]
          Length = 218

 Score = 62.0 bits (149), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 6/68 (8%)

Query: 20  LAGCATA--YGPR----GLTGGYTDAKLADDLYRVTFSGNGKTSRDMVWHYWIYRCAELT 73
           LA CAT   Y PR     +TGG+++ KL  D YR++F+GN  TSR+ V  Y +YR AELT
Sbjct: 41  LAACATPTPYQPRITSGAVTGGFSEQKLESDRYRISFAGNSLTSRETVERYLLYRSAELT 100

Query: 74  QQQGYSHF 81
            QQGY  F
Sbjct: 101 VQQGYDWF 108


>ref|YP_002128781.1| hypothetical protein PHZ_p0263 [Phenylobacterium zucineum HLK1]
 gb|ACG80206.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 198

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 6/77 (7%)

Query: 13 IVLAAAMLAGCATA--YGP----RGLTGGYTDAKLADDLYRVTFSGNGKTSRDMVWHYWI 66
          I+L+ A L+ CATA  Y P    +  +GGY++ +L  + +RVTF+GN  TSR+ V  Y +
Sbjct: 16 ILLSVATLSACATATPYQPNLPRQKASGGYSEQRLEPNRWRVTFAGNSLTSRETVESYLL 75

Query: 67 YRCAELTQQQGYSHFII 83
          +R AELTQ QGY  F I
Sbjct: 76 FRAAELTQAQGYDWFAI 92


>ref|ZP_05109156.1| hypothetical protein LDG_1004 [Legionella drancourtii LLAP12]
 gb|EET13162.1| hypothetical protein LDG_1004 [Legionella drancourtii LLAP12]
          Length = 135

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 37/59 (62%)

Query: 32 LTGGYTDAKLADDLYRVTFSGNGKTSRDMVWHYWIYRCAELTQQQGYSHFIILKPSDPV 90
          LTGG+ D KLA+D Y V F GN  T+RD  + Y + R AELT Q GY +F I+  +  V
Sbjct: 3  LTGGFEDFKLANDTYSVKFLGNEYTNRDQAYKYALRRSAELTTQNGYRYFKIIDSNSSV 61