BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0940.p (566 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774426.1| hemolysin activation/secretion protein [Herb... 561 e-157 ref|YP_943728.1| polypeptide-transport-associated domain-contain... 504 e-140 ref|ZP_08781310.1| Polypeptide-transport-associated domain prote... 484 e-134 ref|YP_002800907.1| hypothetical protein Avin_37880 [Azotobacter... 372 e-100 ref|YP_258593.1| OMP85 family outer membrane protein [Pseudomona... 367 4e-99 >ref|YP_003774426.1| hemolysin activation/secretion protein [Herbaspirillum seropedicae SmR1] gb|ADJ62518.1| hemolysin activation/secretion protein [Herbaspirillum seropedicae SmR1] Length = 565 Score = 561 bits (1446), Expect = e-157, Method: Composition-based stats. Identities = 302/540 (55%), Positives = 401/540 (74%), Gaps = 2/540 (0%) Query: 29 LASAQTAP-DAGSILQQLQPALPVAPATSAPSLKLEPRDEPALPQTAPFEVKRFQMTGNT 87 LA+ P DAGS+LQ+LQ A APA + P LK++ D LP +APF VK ++ GNT Sbjct: 26 LAAGPAVPTDAGSLLQELQTAPRTAPAPNQPELKIQSPDASQLPPSAPFLVKEIRIVGNT 85 Query: 88 VFATESLHELVAGEEGKSLTLVQINTLAERITRYYQQRGYPLARAIIPVQTIRDGVVVIQ 147 F +LH LVA +EGK+LTL ++ LA RI+ YYQ G+PLARAIIP QTI +GVVVIQ Sbjct: 86 AFDAATLHALVADQEGKTLTLADLSALAARISSYYQAHGFPLARAIIPAQTISEGVVVIQ 145 Query: 148 VVEARYGQVRLNNKSAVRDSLLQATLDGLQSGAVIEDEALNRSLLLLSDVPGVGVAATLE 207 VVEARYG++ LNN S V LL++ L LQ ++ + +L+RSLLLLSDVPGVGV A L+ Sbjct: 146 VVEARYGKIHLNNSSPVNSRLLESILSSLQKDQMVAERSLDRSLLLLSDVPGVGVEAVLK 205 Query: 208 PGAAVGSSDVTVNTTVNPATLGTVAVDNYGNRYVDRVRVSGNLNVVNPLHHGDLLSATVL 267 PG AVG+SD+ V TT ++G++++DN+GNRY+ R R+SG ++ NPLHHGD+LSA ++ Sbjct: 206 PGEAVGTSDMDVVTTPKAVSIGSMSIDNFGNRYIGRARLSGTASLFNPLHHGDVLSANLV 265 Query: 268 STGSGMNYGRLSYDILVNGQGTHLGAAYSLLRYKLGSELSALDANGTASVASLWGRHPLM 327 STG M+YGR+SYD L+NGQGTH+G AYS++ YKLG + ALDA+G A VASLW +HPL+ Sbjct: 266 STGERMSYGRISYDTLLNGQGTHVGGAYSMVHYKLGDSVRALDAHGNALVASLWLKHPLL 325 Query: 328 RSRQANVYAQVQVDGKRLRDHVDASALRTDRHLLNWVMSINGDIRDSLLAGGISIWSLGW 387 RSR AN+Y Q+Q D K+L D + A+ LRTDRHL NWV+S++G++RDS+L GG+S W +GW Sbjct: 326 RSRDANLYGQIQYDTKKLEDRIGATGLRTDRHLDNWVLSLSGNLRDSVLGGGVSAWGMGW 385 Query: 388 TSGRLFFDDTAAAAADAAAGQTRGGFAKWNANFSRLQGISAGHALYLNLAAQWSDGNLDS 447 T+GR+ +DD AA A+DA QTRGGF+KWN NFSRLQ + +LY N + QWSD NLDS Sbjct: 386 TAGRVGYDDAAAEASDALTAQTRGGFSKWNFNFSRLQFLGRRDSLYANFSVQWSDANLDS 445 Query: 448 AEKMTAGGPYTVRGYDVGAMSGDSGYVGTIEWRHELGNGLSGQWQAIAFLDSAYIKVNQH 507 AEKM+ GGPY+VR YD+GA+SGD+GY+G+IE RHE+G+ G Q +AF+DSA + +N+ Sbjct: 446 AEKMSVGGPYSVRAYDIGAISGDTGYLGSIELRHEMGSMAGGTLQVLAFVDSARVNINRR 505 Query: 508 PWSAGANSGSLSGAGVGLNWNGPDQWRASVSVASRVG-AKPSMVASQSSVRAWATLSKAF 566 W+ G NS +LSG GVG+ W+ W AS VA+++G A S++ S +S RAW +SK F Sbjct: 506 QWTTGQNSVTLSGTGVGMRWSNDALWEASAYVATKIGSANSSLIESSASTRAWLVVSKGF 565 >ref|YP_943728.1| polypeptide-transport-associated domain-containing protein [Psychromonas ingrahamii 37] gb|ABM04129.1| Polypeptide-transport-associated domain protein, ShlB-type [Psychromonas ingrahamii 37] Length = 569 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 261/561 (46%), Positives = 365/561 (65%), Gaps = 9/561 (1%) Query: 13 LLHPIAAALVLAGLAPLASAQTAPDAGSILQQLQP----ALPVAPATSAPSLKLEPRDEP 68 LL+ +A LV + LA Q P AG+ILQQ++P A PA P +++ + Sbjct: 11 LLYVLAVQLVAS--PALAQNQIIPGAGTILQQIKPLQSPAPTPTPARIGPLQEIDQIPDK 68 Query: 69 ALPQTAPFEVKRFQMTGNTVFATESLHELVAGEEGKSLTLVQINTLAERITRYYQQRGYP 128 P APF + + +TGNT+F TE+LH LV EG+S+ L ++ L I YY + YP Sbjct: 69 PTPSGAPFSITKLLITGNTLFDTETLHALVVQAEGQSMPLNRLEALIAAIPAYYSGKNYP 128 Query: 129 LARAIIPVQTIRDGVVVIQVVEARYGQVRLNNKSAVRDSLLQATLDGLQSGAVIEDEALN 188 L R +IP Q +RDG+V ++V+E RYG + LN+ S V+ LLQ+ L L++G +I LN Sbjct: 129 LVRVVIPAQVVRDGIVRVEVIEGRYGDISLNDSSQVQSQLLQSALAPLETGQLINQTPLN 188 Query: 189 RSLLLLSDVPGVGVAATLEPGAAVGSSDVTVNTTVN-PATLGTVAVDNYGNRYVDRVRVS 247 R+LLLLSDVPGV V L+PG + G++D+ V T + P+ G + +DN G+ Y R++ Sbjct: 189 RTLLLLSDVPGVKVKGLLKPGKSKGTTDLIVTTVQSGPSVTGNITLDNNGSSYTGNTRIA 248 Query: 248 GNLNVVNPLHHGDLLSATVLSTGSGMNYGRLSYDILVNGQGTHLGAAYSLLRYKLGSELS 307 G++ VN LHHGD+LS ++LS G+ MNYGRLSYD L++G GTHLG S L YKLG L Sbjct: 249 GSVFFVNQLHHGDVLSISILSAGANMNYGRLSYDTLIDGNGTHLGGEVSALSYKLGEPLE 308 Query: 308 ALDANGTASVASLWGRHPLMRSRQANVYAQVQVDGKRLRDHVDASALRTDRHLLNWVMSI 367 AL A G+A AS+W + PL RSR NVY + Q+ +LRD VDA RTDRHL N S+ Sbjct: 309 ALKAYGSARTASIWAQKPLFRSRDTNVYGKFQLKHLQLRDRVDAIDNRTDRHLNNLTASL 368 Query: 368 NGDIRDSLLAGGISIWSLGWTSGRLFFDDTAAAAADAAAGQTRGGFAKWNANFSRLQGIS 427 +G+IRD+ L G I++W L G L FDD A + DA +T G + KW A+ RLQG++ Sbjct: 369 DGNIRDNFLVGAITVWKLEANIGWLGFDDPVAQSNDAQTAKTDGRYEKWIASIGRLQGLT 428 Query: 428 AGHALYLNLAAQWSDGNLDSAEKMTAGGPYTVRGYDVGAMSGDSGYVGTIEWRHELGNGL 487 LY N+A QW+ NLDS++K +AGG YTVRGY+ GA+SGDSGY GTIEWRHEL + Sbjct: 429 TKDMLYFNVAGQWAGDNLDSSQKFSAGGAYTVRGYETGAISGDSGYTGTIEWRHELFSNE 488 Query: 488 SGQWQAIAFLDSAYIKVNQHPW--SAGANSGSLSGAGVGLNWNGPDQWRASVSVASRVGA 545 + +WQ IAF+D+AY+K+N+ W ++ N+ +LSG GVG+NW GP W A + VA+ +G Sbjct: 489 NQRWQGIAFIDTAYLKINKDLWPEASADNTATLSGTGVGVNWTGPQDWSAQLHVATPIGT 548 Query: 546 KPSMVASQSSVRAWATLSKAF 566 +P+++ ++ RAWA +++ F Sbjct: 549 RPALLEDTANYRAWAEIARRF 569 >ref|ZP_08781310.1| Polypeptide-transport-associated domain protein ShlB-type [Methylobacter tundripaludum SV96] gb|EGW23485.1| Polypeptide-transport-associated domain protein ShlB-type [Methylobacter tundripaludum SV96] Length = 525 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 251/471 (53%), Positives = 333/471 (70%) Query: 31 SAQTAPDAGSILQQLQPALPVAPATSAPSLKLEPRDEPALPQTAPFEVKRFQMTGNTVFA 90 +A AP++G++LQQ+QP P AP+ S L +E + LP +APF+VK Q+ GN Sbjct: 46 AAPVAPNSGTMLQQIQPVTPPAPSPSGTGLTIEGQGAAKLPASAPFQVKSIQIAGNAKID 105 Query: 91 TESLHELVAGEEGKSLTLVQINTLAERITRYYQQRGYPLARAIIPVQTIRDGVVVIQVVE 150 T++LH L+A EG+S+ L Q+ LA+RIT YY GYPLARA IP QTI+ GVV I+V+E Sbjct: 106 TKNLHALIADTEGRSIALPQLGELADRITAYYHDHGYPLARAFIPAQTIQSGVVRIEVME 165 Query: 151 ARYGQVRLNNKSAVRDSLLQATLDGLQSGAVIEDEALNRSLLLLSDVPGVGVAATLEPGA 210 A+Y +++L+N+S V D LL TL L SG I ++ +LLL+SD+PG+ V +TL+PG Sbjct: 166 AQYDKIQLDNRSGVDDGLLNDTLTTLHSGQTIGQSGIDHALLLMSDIPGLAVNSTLKPGG 225 Query: 211 AVGSSDVTVNTTVNPATLGTVAVDNYGNRYVDRVRVSGNLNVVNPLHHGDLLSATVLSTG 270 VG+SD+ V A G + VD+YGNRY R R G +N +NPL HGD+LS + L+ G Sbjct: 226 TVGTSDLQVGVDATQAVTGNLVVDDYGNRYTGRPRAGGTVNWLNPLRHGDVLSLSGLTAG 285 Query: 271 SGMNYGRLSYDILVNGQGTHLGAAYSLLRYKLGSELSALDANGTASVASLWGRHPLMRSR 330 S +NYGRL+Y+ LVNG+GT LGAAYS L Y L LSAL A GTA V S W RHPL+ SR Sbjct: 286 SDLNYGRLAYETLVNGRGTRLGAAYSALDYSLSGSLSALQAQGTAQVGSAWARHPLVGSR 345 Query: 331 QANVYAQVQVDGKRLRDHVDASALRTDRHLLNWVMSINGDIRDSLLAGGISIWSLGWTSG 390 N+YAQV+ D LRD +D S ++T RHL N +S++GD RD+LL+GGI+ W LGWT G Sbjct: 346 DFNLYAQVEYDRMDLRDRIDVSGIKTYRHLDNGTVSLSGDARDTLLSGGINTWMLGWTGG 405 Query: 391 RLFFDDTAAAAADAAAGQTRGGFAKWNANFSRLQGISAGHALYLNLAAQWSDGNLDSAEK 450 + FD+ A A+DAA +T+G F+KWNAN SRLQ ++ ALYL A QW+ NLDS++K Sbjct: 406 HVGFDNPDAQASDAATAKTQGTFSKWNANLSRLQSLTQKDALYLAFAGQWAQDNLDSSKK 465 Query: 451 MTAGGPYTVRGYDVGAMSGDSGYVGTIEWRHELGNGLSGQWQAIAFLDSAY 501 M GGPYTVRGYD+GA+SGD+GY+GT E RH+LG+G GQ+QA+ F+DSA+ Sbjct: 466 MIVGGPYTVRGYDMGAVSGDTGYIGTAELRHDLGSGRFGQFQAVGFIDSAH 516 >ref|YP_002800907.1| hypothetical protein Avin_37880 [Azotobacter vinelandii DJ] gb|ACO79932.1| conserved hypothetical protein [Azotobacter vinelandii DJ] Length = 550 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 218/555 (39%), Positives = 317/555 (57%), Gaps = 10/555 (1%) Query: 15 HPIAAALVLAGLAPLASAQTA--PDAGSILQQLQPALPVAPATSAPSLKL-EPRDEPALP 71 HP+ L P+ S A PDAG ++Q ++ P L L E +E Sbjct: 3 HPLRPLFALCTCLPVCSVLAAILPDAGRLIQDIESTPLSIPTPQRLDLTLPESGNEQVTA 62 Query: 72 QTAPFEVKRFQMTGNTVFATESLHELVAGEEGKSLTLVQINTLAERITRYYQQRGYPLAR 131 VK F+++GN + L L+ +G+ L L ++ A R++ +Y+QRGYPLAR Sbjct: 63 GGPKLSVKAFRLSGNQAIPSSELLPLLDDLKGRDLGLAELQQAAWRLSNHYRQRGYPLAR 122 Query: 132 AIIPVQTIRDGVVVIQVVEARYGQVRLNNKSAVRDSLLQATLDGLQSGAVIEDEALNRSL 191 A +P Q I G+V I ++E RYGQ+RL N S V + +L L L+SGA +E +AL RSL Sbjct: 123 AYLPPQEIDRGIVEIALLEGRYGQIRLQNGSHVGNRVLARPLSLLESGAAVEGKALERSL 182 Query: 192 LLLSDVPGVGVAATLEPGAAVGSSDVTVNTTVNPATLGTVAVDNYGNRYVDRVRVSGNLN 251 LLL D PGV V +TL PGA+VG++D+ V T P G++ DN+GNR++ + R+ LN Sbjct: 183 LLLQDTPGVEVRSTLRPGASVGTTDLIVETRPAPLLSGSLDADNHGNRFMGQNRLGLTLN 242 Query: 252 VVNPLHHGDLLSATVLSTGSGMNYGRLSYDILVNGQGTHLGAAYSLLRYKLGSELSALDA 311 + +PL GDLL+ + + G NY R+ Y + + GT LG AYS + Y+L + LDA Sbjct: 243 LNSPLGLGDLLTLRGMRSDEGQNYRRIVYQLPLGPAGTQLGVAYSDMDYELSKDFDELDA 302 Query: 312 NGTASVASLWGRHPLMRSRQANVYAQVQVDGKRLRDHVDASALRTDRHLLNWVMSINGDI 371 +G A + + + PL+RSR N+Y +Q + K L D +D + R+D+ L NW +++G+ Sbjct: 303 HGNARIVTAFVLQPLIRSRAFNLYGHLQFEDKFLEDDIDLFSSRSDKRLRNWSATLSGNA 362 Query: 372 RDSLLAGGISIWSLGWTSGRLFFDDTAAAAADAAAGQTRGGFAKWNANFSRLQGISAGHA 431 +DSL GG++ ++L +T G L D DAA +T+G F KWN RLQ ++ + Sbjct: 363 QDSL--GGVTGFALTYTHGDLNIDSGDVERLDAATARTQGSFNKWNPAILRLQRLTERLS 420 Query: 432 LYLNLAAQWSDGNLDSAEKMTAGGPYTVRGYDVGAMSGDSGYVGTIEWRHELGNGLSGQW 491 LY++L AQ SDGNLDSAEK GGPY VR Y G +GD G++ IE R+ L+ W Sbjct: 421 LYIHLQAQLSDGNLDSAEKFWLGGPYGVRAYPQGEATGDQGWLANIELRY----ALTPAW 476 Query: 492 QAIAFLDSAYIKVNQHPWSAGANSGSLSGAGVGLNWNGPDQWRASVSVASRVGAKPSMVA 551 Q F+D + +N+ W AG N LSGAGVG+ WN WR SV A ++G++ + Sbjct: 477 QFSTFIDHGEVHLNEDTWDAGDNHRRLSGAGVGVGWND-HGWRISVVSAWKLGSERTESD 535 Query: 552 SQSSVRAWATLSKAF 566 + R WA L + F Sbjct: 536 VNRTPRLWAQLVRYF 550 >ref|YP_258593.1| OMP85 family outer membrane protein [Pseudomonas fluorescens Pf-5] gb|AAY90749.1| outer membrane protein, OMP85 family [Pseudomonas fluorescens Pf-5] Length = 583 Score = 367 bits (941), Expect = 4e-99, Method: Composition-based stats. Identities = 213/537 (39%), Positives = 304/537 (56%), Gaps = 12/537 (2%) Query: 36 PDAGSILQQLQPALPVAPATSAPSLKLEPRDEPALPQTAP------FEVKRFQMTGNTVF 89 P+AG ++ +Q P P AP L L P P+ P AP +V F + GN VF Sbjct: 53 PNAGQAMRDIQATQPALPEQPAPELDL-PAKPPSAPAQAPDTSGIRLQVNDFVIVGNQVF 111 Query: 90 ATESLHELVAGEEGKSLTLVQINTLAERITRYYQQRGYPLARAIIPVQTIRDGVVVIQVV 149 + E+L L+A +G+ L L Q+ AER+T YYQ +GY LARA +P Q I DGVV I+V+ Sbjct: 112 SNETLQALLADLKGQELDLNQLRAAAERLTTYYQNQGYMLARAFLPAQDIEDGVVRIEVM 171 Query: 150 EARYGQVRLNNKSAVRDSLLQATLDGLQSGAVIEDEALNRSLLLLSDVPGVGVAATLEPG 209 E RYG++++NN+S +S++ L L S + E L RSLLLLSD+PGV V TL G Sbjct: 172 EGRYGRIQVNNQSRALNSVITGPLSSLHSDTAVRSEDLERSLLLLSDLPGVRVKGTLSAG 231 Query: 210 AAVGSSDVTVNTTVNPATLGTVAVDNYGNRYVDRVRVSGNLNVVNPLHHGDLLSATVLST 269 G++D+ VN P GT+ DN+G Y R+ G+LN+ NPL GD + +L + Sbjct: 232 EQRGTTDLLVNAQPGPWASGTLEADNFGGYYTGEYRLGGSLNLNNPLRLGDQFNLRLLGS 291 Query: 270 GSGMNYGRLSYDILVNGQGTHLGAAYSLLRYKLGSELSALDANGTASVASLWGRHPLMRS 329 Y R +Y + + T +G AYS + Y+L + L+A+G AS+ S++ PL+RS Sbjct: 292 DEDQRYYRAAYKLPLGPWSTSVGVAYSRMNYELSRDFEVLEAHGQASIGSVFITQPLIRS 351 Query: 330 RQANVYAQVQVDGKRLRDHVDASALRTDRHLLNWVMSINGDIRDSLLAGGISIWSLGWTS 389 R ++ AQ+Q + KRLRD +D + + +H+ W +S+NG+ +DSLL GG + + L + S Sbjct: 352 RTFDLSAQLQYEDKRLRDDIDLFEVSSQKHVELWSLSLNGNSQDSLLGGGQNFFYLTYGS 411 Query: 390 GRLFFDDTAAAAADAAAGQTRGGFAKWNANFSRLQGISAGHALYLNLAAQWSDGNLDSAE 449 GRL DD D T GGF K N N +RLQ +S LY QWS NLDS+E Sbjct: 412 GRLSIDDPMDQWRDHFTAGTNGGFQKLNLNAARLQYLSPRFQLYGQFNGQWSSTNLDSSE 471 Query: 450 KMTAGGPYTVRGYDVGAMSGDSGYVGTIEWRHELGNGLSGQWQAIAFLDSAYIKVNQHPW 509 K GGP+ VR Y G SGD G+ ++E R L+ +WQ AF+D ++VN+ PW Sbjct: 472 KFGIGGPFDVRAYPQGTSSGDQGWQASLELRFL----LAPRWQLKAFVDHGAVQVNKSPW 527 Query: 510 SAGANSGSLSGAGVGLNWNGPDQWRASVSVASRVGAKPSMVASQSSVRAWATLSKAF 566 N LSGAGVG +W+GP Q + SV+ A + + + R WA+ ++ F Sbjct: 528 IHDENRRQLSGAGVGASWSGPSQ-QISVTSAWALDNNQEGSGPERTPRIWASATQYF 583