BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0936.p (580 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774425.1| filamentous hemagglutinin outer membrane pro... 458 e-126 ref|YP_983922.1| filamentous hemagglutinin outer membrane protei... 311 2e-82 ref|YP_004213962.1| filamentous hemagglutinin family outer membr... 267 4e-69 ref|YP_004380950.1| filamentous hemagglutinin-like protein [Pseu... 258 3e-66 ref|ZP_08781309.1| filamentous hemagglutinin family outer membra... 254 2e-65 >ref|YP_003774425.1| filamentous hemagglutinin outer membrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62517.1| filamentous hemagglutinin outer membrane protein [Herbaspirillum seropedicae SmR1] Length = 1568 Score = 458 bits (1179), Expect = e-126, Method: Composition-based stats. Identities = 348/541 (64%), Positives = 421/541 (77%), Gaps = 16/541 (2%) Query: 3 HASMNRIYRLVWSHVQQAWVIVSERTRGQGKKVSRRLAAAAALSAASALAMAGPSGGAVT 62 HAS+NRIYRLVWSHV QAWV+VSE +RGQGK+ +R++ AAA L + LA A P GG VT Sbjct: 4 HASLNRIYRLVWSHVHQAWVVVSEVSRGQGKRANRKVIAAALL-VSPLLAQAAPVGGQVT 62 Query: 63 AGSGSISQSGNTTTVTQGSQNLSVNWQSFNTSSGEKVNFVQPSASAIAVNRIQDVNATQF 122 AG+GSISQSGNTTT+TQ SQNLSVNWQSFNT+S E VNF+QPSASAIAVNRI D N T+F Sbjct: 63 AGAGSISQSGNTTTITQSSQNLSVNWQSFNTASHETVNFIQPSASAIAVNRIYDTNPTRF 122 Query: 123 MGQLNANGQVYLINPNGILFGAGAQVNVGSLVASTLDINDAALGSSTRNFSGMGSGSIVN 182 GQLNANGQVYLINPNG+LFGAG+QVNVG LVASTLD++DA+L ++ RNFSG G+GSI+N Sbjct: 123 FGQLNANGQVYLINPNGVLFGAGSQVNVGGLVASTLDMSDASLAAAARNFSGSGTGSIIN 182 Query: 183 QGSINSANGGYVAFLGKQVSNQGSIATTAGTTALAAGSDVTLSFAGNNLVSLRVNQSTLD 242 QG I+ ANGGYVAF+G VSNQG+I AGT ALAAG+DVTL+FA +LV L+VNQ+TL+ Sbjct: 183 QGDISVANGGYVAFIGNTVSNQGNITAPAGTVALAAGNDVTLTFANASLVKLQVNQNTLN 242 Query: 243 SLSGNGGLIQADGGTVLLSAGARDAVLASAVNNTGIIQARSVQNVNGTIVLEAGSHGTAT 302 +LS NGGLI ADGG VL+SAGA+DAVLAS VNNTGII+ARSVQNVNG IVL+ G+ T + Sbjct: 243 NLSENGGLILADGGAVLMSAGAKDAVLASVVNNTGIIEARSVQNVNGRIVLDGGNLATVS 302 Query: 303 NSGTLDASGRSAGETGGTVKLLGGTVAQTSGGRIDVTGDAGGGTAYVGGNFLGAGPEQNA 362 NSGTLDASG++AG+TGGTVK+LG V SG ID++GDAGGG+A+VGGNFLGAGPEQNA Sbjct: 303 NSGTLDASGKNAGQTGGTVKVLGKEVTLASGSNIDISGDAGGGSAFVGGNFLGAGPEQNA 362 Query: 363 TTTTVEAGSSIDASAISNGNGGRVALWSDGTTRFDGSIAARGGAWSGNGGAVETSGLKLK 422 TTV AG++I+A A+SNGNGG VA+WSDG T F+GSI ARGG GNGG VETSG L Sbjct: 363 LNTTVAAGATINADALSNGNGGNVAIWSDGNTSFNGSITARGGKDGGNGGQVETSGEHLT 422 Query: 423 IGSTASVNTLAPRGSAGNWLLDPSDIKIGSIAFWGSNYGIDVDSAVLTAALNNGNVTIKT 482 +G A VNTLAP+G G+WLLDP D++I N D+ A +TAAL +VTIKT Sbjct: 423 VGKPAFVNTLAPKGKVGSWLLDPQDMRI--YYDQDPNSHGDISGAQITAALQYSDVTIKT 480 Query: 483 SRAGPSCGVT-CGSGSGSSGDILVLDPIGVAVASYDANHTATYVNWDSNSYTLTLSAYNN 541 V+ CG+G+ +GDI ++D + + +NW + + TLTLSAY + Sbjct: 481 GPTVSCTNVSGCGAGTSGNGDINLVDGVLIG-----------GMNWTTGT-TLTLSAYRD 528 Query: 542 V 542 + Sbjct: 529 I 529 >ref|YP_983922.1| filamentous hemagglutinin outer membrane protein [Polaromonas naphthalenivorans CJ2] gb|ABM39001.1| filamentous hemagglutinin family outer membrane protein [Polaromonas naphthalenivorans CJ2] Length = 1105 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 245/522 (46%), Positives = 339/522 (64%), Gaps = 20/522 (3%) Query: 6 MNRIYRLVWSHVQQAWVIVSERTRGQGKKVSRRLAAAAA-------------LSAASALA 52 MN I+R +W+ +V VSE TR GKK+S +AA + A A Sbjct: 1 MNHIHRSIWNDQTGTFVAVSENTRSAGKKISSCASAAGGGAHFGLKTLAVCLMLACGAGV 60 Query: 53 MAGPSGGAVTAGSGSISQSGNTTTVTQGSQNLSVNWQSFNTSSGEKVNFVQPSASAIAVN 112 A P+GG V+AGS +I + T+TQ + N+++NWQSF +GE V FVQP ++++A+N Sbjct: 61 HAQPTGGVVSAGSATIGGTPGAMTITQTTPNVAINWQSFGIRAGESVQFVQPGSNSVALN 120 Query: 113 RIQDVNATQFMGQLNANGQVYLINPNGILFGAGAQVNVGSLVASTLDINDAALGSSTRNF 172 R+ + + +G L++NG+V+L+NPNGILFG GA VNVG LVASTL I+DA + F Sbjct: 121 RVVGADPSSILGSLSSNGKVFLVNPNGILFGQGASVNVGGLVASTLAISDANFMARNYQF 180 Query: 173 SGMGSGSIVNQGSINSANGGYVAFLGKQVSNQGSIATTAGTTALAAGSDVTLSFAGNNLV 232 SG G+GS+VNQG+IN+A+GGYVA LG VSNQG IA GT ALAAG+ VTL AG+ L+ Sbjct: 181 SGAGTGSVVNQGAINAASGGYVALLGANVSNQGVIAAQLGTVALAAGNAVTLDVAGDKLL 240 Query: 233 SLRVNQSTLDSLSGNGGLIQADGGTVLLSAGARDAVLASAVNNTGIIQARSVQNVNGTIV 292 S+ V+Q +++L NGGL++ADGG VL++ A ++L++AVNNTG++QA+++QNVNGTI Sbjct: 241 SVTVDQGAVNALVDNGGLLRADGGQVLMTTQAAGSLLSNAVNNTGVVQAQTLQNVNGTIK 300 Query: 293 LEAG-SHGTATNSGTLDASGRSAGETGGTVKLLGGTVAQTSGGRIDVTGDAGGGTAYVGG 351 L G +GT + GTLDASG AG+TGG+V + G A GG+++ +GDAGGGT +GG Sbjct: 301 LLGGMENGTVSAGGTLDASGTGAGQTGGSVTVTGHH-AGLFGGQVNASGDAGGGTVLIGG 359 Query: 352 NFLGAGPE-QNATTTTVEAGSSIDASAISNGNGGRVALWSDGTTRFDGSIAARGGAWSGN 410 ++ G P QNA T + A +SI A AI++GNGG+V LW + +TR GSI ARGGA GN Sbjct: 360 DYQGKNPAVQNAAATYMSADASIRADAITSGNGGKVVLWGNDSTRAYGSITARGGAQGGN 419 Query: 411 GGAVETSGLKLKIGSTASVNTLAPRGSAGNWLLDPSDIKIGSIAFWGSNYGIDVDSAVLT 470 GG +ETSG L + +N A G AG WLLDP+D+ I + A G +V + + Sbjct: 420 GGLIETSGHALDVAGI-QINASAANGLAGLWLLDPADVTITNAATSGGTLTGNVFTPNPS 478 Query: 471 AALNNGNVT--IKTSRAGPSCGVTCGSGSGS-SGDILVLDPI 509 A+ N NV + AG + +T + SG+ +GDI V PI Sbjct: 479 ASTANVNVADIVTALTAGTNVTITTANTSGAGNGDITVDTPI 520 >ref|YP_004213962.1| filamentous hemagglutinin family outer membrane protein [Rahnella sp. Y9602] gb|ADW74835.1| filamentous hemagglutinin family outer membrane protein [Rahnella sp. Y9602] Length = 1518 Score = 267 bits (683), Expect = 4e-69, Method: Composition-based stats. Identities = 211/502 (42%), Positives = 307/502 (61%), Gaps = 41/502 (8%) Query: 6 MNRIYRLVWSHVQQAWVIVSERTRGQGKKVSRR------------------------LAA 41 MN I+ ++W+H + A+V+VSE T +GK+ R ++ Sbjct: 1 MNCIFSVIWNHSRNAFVVVSELTTRRGKRSDVRAIQVDDHSTPFNGAITPPPFAIALISF 60 Query: 42 AAALSAASALAMAGPSGGAVTAGSGSISQSGN-TTTVTQGSQNLSVNWQSFNTSSGEKVN 100 + ++A P+GG V GSG I + + T+ Q Q ++++WQSFN KV Sbjct: 61 IVSFMPVISMAADLPTGGNVVLGSGQIGAAADHQLTINQSGQKMAIDWQSFNIGKDNKVT 120 Query: 101 FVQPSASAIAVNRIQDVNATQFMGQLNANGQVYLINPNGILFGAGAQVNVGSLVASTLDI 160 FVQP A ++A+NR+ + ++ MGQLNANG+V+LINPNG+LFG GA V+VG LVASTL+I Sbjct: 121 FVQPGADSVALNRVIGADGSKIMGQLNANGRVFLINPNGVLFGQGASVSVGGLVASTLNI 180 Query: 161 NDAALGSSTRNFSGMGS-GSIVNQGSINSANGGYVAFLGKQVSNQGSIATTAGTTALAAG 219 ++ + F G GS S++NQG+IN+A+GG V LG VSNQG I G+ ALAAG Sbjct: 181 SNQDFANGKYRFRGDGSNASVINQGTINAADGGAVVLLGGTVSNQGVIVAKQGSVALAAG 240 Query: 220 SDVTLSFAGNNLVSLRVNQSTLDSLSGNGGLIQADGGTVLLSAGARDAVLASAVNNTGII 279 + VTL FAG+ L++++V+++T ++L N LIQADGG V+++A A +A+L + VNNTG+I Sbjct: 241 NAVTLDFAGDGLLNVQVDEATRNALVENRQLIQADGGQVIMTAAASNALLRTVVNNTGVI 300 Query: 280 QARSVQNVNGTIVLEAGSHGTATNSGTLDASGRSAGETGGTVKLLGGTVAQTSGGRIDVT 339 +AR +QN NG I L G +GTLDAS S TGG +++ G +A TS ++V+ Sbjct: 301 EARGLQNKNGKISLGGSDSGLVRVAGTLDAS--SPHGTGGAIQITGQNIALTS-ATLNVS 357 Query: 340 GDAGGGTAYVGGNFLGAGPEQNATTTTVEAGSSIDASAISNGNGGRVALWSDGTTRFDGS 399 G GGG+ +GG+ G GP NA +V+AGSS+ A A + G GG + +WS+GTT G+ Sbjct: 358 GARGGGSIKIGGDAQGKGPLANAQGVSVDAGSSVKADAGTTGKGGNIVVWSNGTTVAKGN 417 Query: 400 IAARGGAWSGNGGAVETSGLKLKIGSTASVNTLAPRGSAGNWLLDPSDIKIGSIAFWGSN 459 +ARGG SG+GG+VETSG + + VNT A +G GNW +DP D+ + Sbjct: 418 FSARGGTQSGDGGSVETSGHHVDF-TGIQVNTSATQGKTGNWRVDPEDLNVD-------- 468 Query: 460 YGIDVDSAVLTAALNNGNVTIK 481 D +A + AAL N +VT++ Sbjct: 469 ---DASAATINAALLNTDVTLQ 487 >ref|YP_004380950.1| filamentous hemagglutinin-like protein [Pseudomonas mendocina NK-01] gb|AEB59198.1| filamentous hemagglutinin-like protein [Pseudomonas mendocina NK-01] Length = 1792 Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 216/556 (38%), Positives = 314/556 (56%), Gaps = 26/556 (4%) Query: 1 MRHASMNRIYRLVWSHVQQAWVIVSERTRGQGKK--VSRRLAAAAALSAASALAMAGPSG 58 M+ AS+N +YRLVWS QA+V V+E + +GK+ V LAA + L + + LA P+G Sbjct: 1 MKRASLNHLYRLVWSDADQAFVAVAEHSTARGKRGGVVGVLAAVSLLGSGAVLAADLPTG 60 Query: 59 GAVTAGSGSISQSGNTTTVTQGSQNLSVNWQSFNTSSGEKVNFVQPSASAIAVNR-IQDV 117 +V GSG+ISQ+G+ V Q + L NW SF+ + V F QP A++IA+NR I Sbjct: 61 ASVVGGSGNISQNGSHMVVDQHTGKLVTNWNSFDIGADASVTFHQPGANSIALNRVIGGG 120 Query: 118 NATQFMGQLNANGQVYLINPNGILFGAGAQVNVGSLVASTLDINDAA-LGSSTRNFSGMG 176 NA+Q +G+L+ANGQV+L+NPNG++ G GA+VNVG LVAS+L I+D L T G G Sbjct: 121 NASQILGKLDANGQVWLLNPNGVVIGKGAEVNVGGLVASSLQISDQDFLAGKTTLSGGAG 180 Query: 177 SGSIVNQGSINSANGGYVAFLGKQVSNQGSIATTAGTTALAAGSDVTLSFAGNNLVSLRV 236 +G+++NQGS+N+A GG VA +G QV N GSI T G+T LAAG V+L F G+ LV + V Sbjct: 181 AGAVINQGSVNTAPGGMVALIGPQVGNSGSIHTPGGSTVLAAGDKVSLDFQGDGLVGVNV 240 Query: 237 NQSTLDSLSGNGGLIQADGGTVLLSAGARDAVLASAVNNTGIIQARSVQNVNGTIVLEAG 296 + LD+ N G I ADGG V LSA + DA+L+S +NNTG+I+A+ + G I+L+ Sbjct: 241 ERGVLDAAVRNDGQISADGGLVSLSARSADALLSSVINNTGVIEAKGLVERGGRILLDGD 300 Query: 297 SHGTATN-SGTLDASGRSAGETGGTVKLLGGTVAQTSGGRIDVTGDAGGGTAYVGGNFLG 355 + G T +GTLD S GG++ + G +A D T DA G T G Sbjct: 301 AEGGLTQVAGTLDVSSEQG--KGGSIVVTGERIAVA-----DATLDASGATGGGTIKVGG 353 Query: 356 AGPEQ-----NATTTTVEAGSSIDASAISNGNGGRVALWSDGTTRFDGSIAARGGAWSGN 410 Q NAT TVE + A A G+GG V W+DG RF G I+ RGG +GN Sbjct: 354 GWQGQDATVANATQVTVERNVKVKADATQAGDGGTVVFWADGDNRFAGDISIRGGEQAGN 413 Query: 411 GGAVETSGLKLKIGSTASVNTLAPRGSAGNWLLDPSDIKIGSIAFWGSNYGIDVDSAVLT 470 GG E SG K + + A +G G+ LLDP++I + G+ D+ ++ Sbjct: 414 GGKAEVSG-KQTLHYAGKTDARASKGRTGDLLLDPTNIIVSG----GNGTDGDLSASTGN 468 Query: 471 AALNNGNVTIKTS----RAGPSCGVTCGSGSGSSGDILVLDPIGVAVASYDANHTATYVN 526 + N+ +T+ +A S + +G G I + D + ++ +TAT ++ Sbjct: 469 VTVYEKNLEAQTANVLLQATTSIHFADLNQNGGDGTISMQDDVSFRAEVINSGNTATSIS 528 Query: 527 WDSNSYTLTLSAYNNV 542 + ++S TL +S ++ Sbjct: 529 FANSSNTLEVSGSGSI 544 >ref|ZP_08781309.1| filamentous hemagglutinin family outer membrane protein [Methylobacter tundripaludum SV96] gb|EGW23484.1| filamentous hemagglutinin family outer membrane protein [Methylobacter tundripaludum SV96] Length = 1946 Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 196/321 (61%), Positives = 243/321 (75%), Gaps = 4/321 (1%) Query: 1 MRHASMNRIYRLVWSHVQQAWVIVSE--RTRGQGKKVSRRLAAAAALSAASALAMAGPSG 58 MR AS+N IYRLVWS V+QA+V V+E ++RG+G SR+L A A+A A P+G Sbjct: 1 MRRASLNHIYRLVWSDVKQAFVAVAENSKSRGKGSSPSRKLLMAPLFLFAAA-GHAEPTG 59 Query: 59 GAVTAGSGSISQSGNTTTVTQGSQNLSVNWQSFNTSSGEKVNFVQPSASAIAVNRIQDVN 118 G + +G+GSISQSG+TTT+ Q SQNLS NWQSFN + E VNF QP+ +AIAVNRI D N Sbjct: 60 GQIVSGAGSISQSGDTTTINQTSQNLSANWQSFNIAPSETVNFQQPNTAAIAVNRIADTN 119 Query: 119 ATQFMGQLNANGQVYLINPNGILFGAGAQVNVGSLVASTLDINDAALGSSTRNFSGMGSG 178 TQ +G LNANGQVYLINPNGILFG GAQVNVG LVASTLD+NDA L S++R FSG G+G Sbjct: 120 GTQILGHLNANGQVYLINPNGILFGQGAQVNVGGLVASTLDVNDAGLNSTSRTFSGNGTG 179 Query: 179 SIVNQGSINSANGGYVAFLGKQVSNQGSIATTAGTTALAAGSDVTLSFAGNNLVSLRVNQ 238 S+VN+GSI +A+GG VA LG VSNQG+I GT AL AG+ VTL+F GNNLV ++V+Q Sbjct: 180 SVVNKGSITAADGGSVALLGNTVSNQGTITAQLGTVALGAGNAVTLTFNGNNLVQMQVDQ 239 Query: 239 STLDSLSGNGGLIQADGGTVLLSAGARDAVLASAVNNTGIIQARSVQNVNGTIVLEAGSH 298 S L+SL+ N LI+ADGG V++SAGA++A+LAS VNN G+I+AR+V+N +GTIVL G Sbjct: 240 SVLNSLAENKQLIRADGGQVIMSAGAQNALLASVVNNEGVIEARTVENHDGTIVLLGGME 299 Query: 299 -GTATNSGTLDASGRSAGETG 318 GT GTLDAS + G G Sbjct: 300 AGTVNVGGTLDASAPNGGNGG 320