BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0931.p         (104 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774529.1| cytochrome c551/c552 transmembrane protein [...   159   2e-37
ref|ZP_08276523.1| Cytochrome c551/c552 [Oxalobacteraceae bacter...   107   7e-22
ref|YP_523716.1| class I cytochrome c [Rhodoferax ferrireducens ...   105   2e-21
ref|YP_983099.1| class I cytochrome c [Polaromonas naphthalenivo...   104   5e-21
ref|YP_001099058.1| putative cytochrome c [Herminiimonas arsenic...   103   7e-21

>ref|YP_003774529.1| cytochrome c551/c552 transmembrane protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ62621.1| cytochrome c551/c552 transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 104

 Score =  159 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 99/104 (95%), Positives = 102/104 (98%)

Query: 1   MKYLLLIATLVAGSAISAEAMANAQLAKSKNCMACHSVDAKIVGPAFKEVAKKYNGQKDA 60
           MKYLLLIATLVAGSAISAEAMANAQLAKSKNCMACHSVDAKIVGPAFKEVAKKY GQKDA
Sbjct: 1   MKYLLLIATLVAGSAISAEAMANAQLAKSKNCMACHSVDAKIVGPAFKEVAKKYAGQKDA 60

Query: 61  EAKLTQKVLNGGGGVWGAVAMPANKGQVTEAEAKELVKWVLSLK 104
           EAKLTQKVLNGGGGVWGAV MPANKGQV+EAEA+ELVKWVL+LK
Sbjct: 61  EAKLTQKVLNGGGGVWGAVPMPANKGQVSEAEARELVKWVLTLK 104


>ref|ZP_08276523.1| Cytochrome c551/c552 [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF30006.1| Cytochrome c551/c552 [Oxalobacteraceae bacterium IMCC9480]
          Length = 102

 Score =  107 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 66/104 (63%), Positives = 81/104 (77%), Gaps = 2/104 (1%)

Query: 1   MKYLLLIATLVAGSAISAEAMANAQLAKSKNCMACHSVDAKIVGPAFKEVAKKYNGQKDA 60
           MK+ LL+   ++ + +S  A+A+A LAKSKNCMACH+V  K+VGP FK+VA KY GQKDA
Sbjct: 1   MKHYLLVGVALS-ALLSNVALASADLAKSKNCMACHAVANKVVGPGFKDVAAKYAGQKDA 59

Query: 61  EAKLTQKVLNGGGGVWGAVAMPANKGQVTEAEAKELVKWVLSLK 104
           E KLTQKVL GG G WGAV MP N  QV+EAEA+ LVKW+L+LK
Sbjct: 60  EDKLTQKVLKGGSGNWGAVPMPGN-AQVSEAEARTLVKWILTLK 102


>ref|YP_523716.1| class I cytochrome c [Rhodoferax ferrireducens T118]
 gb|ABD70185.1| cytochrome c, class I [Rhodoferax ferrireducens T118]
          Length = 115

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 61/98 (62%), Positives = 76/98 (77%), Gaps = 1/98 (1%)

Query: 7   IATLVAGSAISAEAMANAQLAKSKNCMACHSVDAKIVGPAFKEVAKKYNGQKDAEAKLTQ 66
           I  L+A  A++  A A+  LAKSKNC+ACH+VD K+VGPA+++VAKKY GQKDA  KL  
Sbjct: 19  ILALIAAVAVTLPAWADLALAKSKNCLACHTVDKKLVGPAYQDVAKKYAGQKDAAGKLAT 78

Query: 67  KVLNGGGGVWGAVAMPANKGQVTEAEAKELVKWVLSLK 104
           K++ GG GVWGAV MPAN  QV EAEA++L +WVLSLK
Sbjct: 79  KIMKGGSGVWGAVPMPANT-QVNEAEARKLAEWVLSLK 115


>ref|YP_983099.1| class I cytochrome c [Polaromonas naphthalenivorans CJ2]
 gb|ABM38178.1| cytochrome c, class I [Polaromonas naphthalenivorans CJ2]
          Length = 106

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 66/103 (64%), Positives = 78/103 (75%), Gaps = 1/103 (0%)

Query: 2   KYLLLIATLVAGSAISAEAMANAQLAKSKNCMACHSVDAKIVGPAFKEVAKKYNGQKDAE 61
           + LL IA+L AG A+ A AMA+ QLA +KNCMACH+VD K+VGPA+K+VA KY GQKDA 
Sbjct: 5   RTLLTIASLAAGFAVCAPAMADLQLATAKNCMACHAVDKKLVGPAYKDVAAKYAGQKDAA 64

Query: 62  AKLTQKVLNGGGGVWGAVAMPANKGQVTEAEAKELVKWVLSLK 104
           AKL  KVL GG GVWG V MPAN  QV   EAK+LV W+L+ K
Sbjct: 65  AKLEAKVLKGGSGVWGPVPMPAN-AQVNPDEAKKLVAWILAQK 106


>ref|YP_001099058.1| putative cytochrome c [Herminiimonas arsenicoxydans]
 emb|CAL60931.1| Cytochrome c-551 precursor (Cytochrome c551) (Cytochrome C8)
           [Herminiimonas arsenicoxydans]
          Length = 102

 Score =  103 bits (258), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 60/99 (60%), Positives = 74/99 (74%), Gaps = 1/99 (1%)

Query: 6   LIATLVAGSAISAEAMANAQLAKSKNCMACHSVDAKIVGPAFKEVAKKYNGQKDAEAKLT 65
           L+  LV  + +S  A+ANA LAK+KNCMACHSV  K++GP+FK+V  KY GQK AE KL 
Sbjct: 5   LLVGLVLAAGVSNVALANADLAKAKNCMACHSVTNKVLGPSFKDVGAKYAGQKGAEDKLV 64

Query: 66  QKVLNGGGGVWGAVAMPANKGQVTEAEAKELVKWVLSLK 104
           QK++ GG G WG V MPAN  QV++AEA  LVKW+LSLK
Sbjct: 65  QKIIKGGSGTWGTVPMPAN-AQVSDAEAHTLVKWILSLK 102