BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0930.p (312 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774528.1| LysR family transcription regulator [Herbasp... 453 e-125 ref|YP_001099054.1| LysR family transcriptional regulator [Hermi... 387 e-105 ref|YP_001352341.1| LysR family transcriptional regulator [Janth... 380 e-103 ref|YP_004751552.1| transcriptional regulator [Collimonas fungiv... 380 e-103 ref|ZP_08273504.1| putative transcriptional regulator (LysR fami... 357 1e-96 >ref|YP_003774528.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] gb|ADJ62620.1| transcription regulator, LysR family protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 278/300 (92%), Positives = 288/300 (96%) Query: 13 MSDHPRLELRQLRYFAAVAEEKHFGRAAARLHMTQPPLSQTIAALEEQLGTPLFQRTKRS 72 MSD PRLELRQLRYFAAVAEE HFGRAAARLHMTQPPLSQTIAALEE LGTPLFQRTKRS Sbjct: 1 MSDLPRLELRQLRYFAAVAEEMHFGRAAARLHMTQPPLSQTIAALEELLGTPLFQRTKRS 60 Query: 73 VALTPAGAALLPEVQRILQQAAALPDLARRAASGASGLLSLSFISSADYSILPPLLQRFR 132 VALT AGAALLPE QR+LQQAAALPDL RRAASGASGLLSLSFISSADYSILPPLLQRFR Sbjct: 61 VALTAAGAALLPEAQRLLQQAAALPDLVRRAASGASGLLSLSFISSADYSILPPLLQRFR 120 Query: 133 ARYPQVQIELREATTDIQLEDLMQGKIDAGLLLPPLPEKAAAVLDVRPVLSEPLIAALPE 192 A YPQVQIELREATTD+QLEDL+QGKIDAGLLLPPLPEKAAA+L+VRPVLSEPLIAALPE Sbjct: 121 AHYPQVQIELREATTDVQLEDLLQGKIDAGLLLPPLPEKAAALLEVRPVLSEPLIAALPE 180 Query: 193 GAVKRRGPVSLKSLRELPLIIFPRRIAPAFHDTILSCFRDAGVTPHIGQEAIQMQTIVGL 252 GAV++RGPVSLKSLRELPLIIFPRRIAPAFHDTILSCFRDAGVTPHIGQEAIQMQTIVGL Sbjct: 181 GAVRKRGPVSLKSLRELPLIIFPRRIAPAFHDTILSCFRDAGVTPHIGQEAIQMQTIVGL 240 Query: 253 VSAGMGMALVPQSVSNLKRPGVDYRRLSDAAPEIQTGLAWRRDNPSGVLRALLDLLEMPA 312 VSAGMGMALVPQSVSNLKRPGVDYRRLSD AP IQT LAWRRD+PS VLRALL+LL+ PA Sbjct: 241 VSAGMGMALVPQSVSNLKRPGVDYRRLSDPAPAIQTSLAWRRDSPSSVLRALLELLDEPA 300 >ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] emb|CAL60927.1| HTH-type transcriptional regulator ilvR (Isoleucine biosynthesis transcriptional activator) [Herminiimonas arsenicoxydans] Length = 297 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 216/292 (73%), Positives = 248/292 (84%), Gaps = 2/292 (0%) Query: 19 LELRQLRYFAAVAEEKHFGRAAARLHMTQPPLSQTIAALEEQLGTPLFQRTKRSVALTPA 78 +ELRQLRYF VAEE HFGRAA RLHMTQPPLSQ I +LE LG LF+RT RSVALTPA Sbjct: 3 IELRQLRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALTPA 62 Query: 79 GAALLPEVQRILQQAAALPDLARRAASGASGLLSLSFISSADYSILPPLLQRFRARYPQV 138 G+ALLPE QRILQQ AALPDL RR SGASG LSL+F+S+ADYS+LPP L+ FR YP V Sbjct: 63 GSALLPEAQRILQQTAALPDLMRRVTSGASGRLSLAFVSTADYSVLPPFLREFRESYPGV 122 Query: 139 QIELREATTDIQLEDLMQGKIDAGLLLPPLPEKAAAVLDVRPVLSEPLIAALPEG--AVK 196 +I+LREATTD+QL+DLMQG+ID GLL+PPLP+KA LD PVLSEPLI A P+G A+K Sbjct: 123 EIDLREATTDVQLDDLMQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAAPKGLKALK 182 Query: 197 RRGPVSLKSLRELPLIIFPRRIAPAFHDTILSCFRDAGVTPHIGQEAIQMQTIVGLVSAG 256 + V+L+SL ELPLIIFPRRIAPAFHD ILSC+RDAG+TPHIGQEAIQMQTI+GLVSAG Sbjct: 183 GKQSVALQSLAELPLIIFPRRIAPAFHDAILSCYRDAGLTPHIGQEAIQMQTIIGLVSAG 242 Query: 257 MGMALVPQSVSNLKRPGVDYRRLSDAAPEIQTGLAWRRDNPSGVLRALLDLL 308 MG+ALVPQSVSNLKRPGVDY+ L++ P ++TGLAWRRDN S VL+A L+LL Sbjct: 243 MGIALVPQSVSNLKRPGVDYKPLANKTPLVETGLAWRRDNASPVLKAFLELL 294 >ref|YP_001352341.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR91080.1| transcriptional regulators, LysR family [Janthinobacterium sp. Marseille] Length = 297 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 213/292 (72%), Positives = 249/292 (85%), Gaps = 2/292 (0%) Query: 19 LELRQLRYFAAVAEEKHFGRAAARLHMTQPPLSQTIAALEEQLGTPLFQRTKRSVALTPA 78 +ELRQLR+F VAEE HFGRAA RLHMTQPPLSQ+I ALE LG LF+RT RSVALTPA Sbjct: 3 IELRQLRHFVTVAEEMHFGRAALRLHMTQPPLSQSIQALEALLGVQLFRRTSRSVALTPA 62 Query: 79 GAALLPEVQRILQQAAALPDLARRAASGASGLLSLSFISSADYSILPPLLQRFRARYPQV 138 G ALLPE QRILQQ AALPDL RRAASGASG LSL+F+S+ADYS+LP L+ FR YPQV Sbjct: 63 GIALLPEAQRILQQTAALPDLMRRAASGASGRLSLAFVSTADYSVLPHFLREFREAYPQV 122 Query: 139 QIELREATTDIQLEDLMQGKIDAGLLLPPLPEKAAAVLDVRPVLSEPLIAALPEG--AVK 196 +I+LREATTD+QL++L QG+ID GLL+PPLP+KA LD PVLSEPLI A+P+G AV+ Sbjct: 123 EIDLREATTDVQLDELAQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAVPKGLKAVR 182 Query: 197 RRGPVSLKSLRELPLIIFPRRIAPAFHDTILSCFRDAGVTPHIGQEAIQMQTIVGLVSAG 256 + V+L+++ ELPLIIFPRRIAPAFHD IL+C+RDAG+TPHIGQEAIQMQTI+GLVSAG Sbjct: 183 GKQTVALQAVAELPLIIFPRRIAPAFHDAILACYRDAGLTPHIGQEAIQMQTIIGLVSAG 242 Query: 257 MGMALVPQSVSNLKRPGVDYRRLSDAAPEIQTGLAWRRDNPSGVLRALLDLL 308 MG+ALVPQSVSNLKRPGVDY+ L+D P ++TG+AWRRDN S VL A L+LL Sbjct: 243 MGIALVPQSVSNLKRPGVDYKALADKTPLVETGMAWRRDNTSPVLNAFLELL 294 >ref|YP_004751552.1| transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK60729.1| Transcriptional regulator [Collimonas fungivorans Ter331] Length = 298 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 216/293 (73%), Positives = 247/293 (84%), Gaps = 3/293 (1%) Query: 19 LELRQLRYFAAVAEEKHFGRAAARLHMTQPPLSQTIAALEEQLGTPLFQRTKRSVALTPA 78 +ELRQLRYF AVAEE+HFGRAA RLHMTQPPLSQ I ALE LGT LF RTKRSVALTPA Sbjct: 3 IELRQLRYFVAVAEERHFGRAALRLHMTQPPLSQAIQALEANLGTSLFARTKRSVALTPA 62 Query: 79 GAALLPEVQRILQQAAALPDLARRAASGASGLLSLSFISSADYSILPPLLQRFRARYPQV 138 G ALLPE QR+LQQAA LPDLARRAASG SGLL+LSF+S+ADYSILPPLL+ FR YP V Sbjct: 63 GQALLPEAQRLLQQAATLPDLARRAASGESGLLTLSFVSTADYSILPPLLRAFREAYPLV 122 Query: 139 QIELREATTDIQLEDLMQGKIDAGLLLPPLPEKAAAVLDVRPVLSEPLIAALPEGAV--- 195 QI+L+EAT+D+QL LM+G+IDAGLL+PPLP+KA L+ +PVL+EPLI A P G Sbjct: 123 QIDLQEATSDLQLAQLMEGRIDAGLLIPPLPDKAKLALEYQPVLAEPLILAAPSGLKALR 182 Query: 196 KRRGPVSLKSLRELPLIIFPRRIAPAFHDTILSCFRDAGVTPHIGQEAIQMQTIVGLVSA 255 ++G ++L L ++PLIIFPRRI+P FHDTIL CFR AGVTPHIGQEAIQMQTIVGLVSA Sbjct: 183 TKKGKIALSDLADMPLIIFPRRISPGFHDTILGCFRAAGVTPHIGQEAIQMQTIVGLVSA 242 Query: 256 GMGMALVPQSVSNLKRPGVDYRRLSDAAPEIQTGLAWRRDNPSGVLRALLDLL 308 GMG+ALVPQSVSNL+RPGVDYR L D P ++TGLAWRRDN S VL+A L+LL Sbjct: 243 GMGIALVPQSVSNLQRPGVDYRELQDQTPLVETGLAWRRDNVSPVLQAFLELL 295 >ref|ZP_08273504.1| putative transcriptional regulator (LysR family) [Oxalobacteraceae bacterium IMCC9480] gb|EGF33027.1| putative transcriptional regulator (LysR family) [Oxalobacteraceae bacterium IMCC9480] Length = 298 Score = 357 bits (916), Expect = 1e-96, Method: Composition-based stats. Identities = 209/292 (71%), Positives = 233/292 (79%), Gaps = 2/292 (0%) Query: 19 LELRQLRYFAAVAEEKHFGRAAARLHMTQPPLSQTIAALEEQLGTPLFQRTKRSVALTPA 78 +ELRQLRYF VAEE HFGRAAARLHMTQPPLSQTI ALE LG LF RT RSVALTPA Sbjct: 3 IELRQLRYFVTVAEELHFGRAAARLHMTQPPLSQTIQALEAGLGHRLFARTNRSVALTPA 62 Query: 79 GAALLPEVQRILQQAAALPDLARRAASGASGLLSLSFISSADYSILPPLLQRFRARYPQV 138 G+ALL E +R+L QA ALP+L R AASG SG L L+F+S+ADYS+LPP L+ FR YPQV Sbjct: 63 GSALLTEARRLLAQAHALPELVRLAASGESGRLVLAFVSTADYSVLPPFLREFREHYPQV 122 Query: 139 QIELREATTDIQLEDLMQGKIDAGLLLPPLPEKAAAVLDVRPVLSEPLIAALPEG--AVK 196 IELREATTDIQL+DL Q +ID GLL+ PLPEK+A L VLSEPLI A P+G A+ Sbjct: 123 HIELREATTDIQLDDLAQNRIDVGLLIAPLPEKSATELAYLRVLSEPLILAAPKGIKALA 182 Query: 197 RRGPVSLKSLRELPLIIFPRRIAPAFHDTILSCFRDAGVTPHIGQEAIQMQTIVGLVSAG 256 VSLK++ LPLIIFPRRIAPAFHD IL+ FR AG+TPHIGQEAIQMQTIVGLVSAG Sbjct: 183 GSTAVSLKAVAGLPLIIFPRRIAPAFHDAILATFRAAGLTPHIGQEAIQMQTIVGLVSAG 242 Query: 257 MGMALVPQSVSNLKRPGVDYRRLSDAAPEIQTGLAWRRDNPSGVLRALLDLL 308 MG+ALVPQSVSNLKRPGV+Y+ L P + TGLAWRRDN S VL A LDLL Sbjct: 243 MGIALVPQSVSNLKRPGVEYKTLRGKTPLVDTGLAWRRDNHSPVLHAFLDLL 294