BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0920.p (319 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_02468743.1| DNA-binding protein [Burkholderia thailandens... 414 e-114 ref|YP_110272.1| DNA-binding protein [Burkholderia pseudomallei ... 404 e-111 ref|YP_996809.1| DeoR family transcriptional regulator [Verminep... 404 e-111 ref|ZP_02465554.1| DNA-binding protein [Burkholderia thailandens... 402 e-110 ref|ZP_04889305.1| putative transcriptional regulator [Burkholde... 401 e-110 >ref|ZP_02468743.1| DNA-binding protein [Burkholderia thailandensis MSMB43] Length = 339 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 214/315 (67%), Positives = 268/315 (85%) Query: 1 MSMDELTRLATLYYVDGLTQQELSERFSISRASIARMLKRAQDEGIVEIRVRHHPGQTIE 60 ++ DELTRLATLYYVDGLTQ++LS++FS+SRA I R+LKRAQDEGIVEIRVRHHP T + Sbjct: 6 VTTDELTRLATLYYVDGLTQEDLSKQFSLSRAKIGRLLKRAQDEGIVEIRVRHHPRDTRD 65 Query: 61 LEHALMQRFGIERALISVSHNDQDRQRAMLAGLVANHLDRSLTDDSIVAVGIGRNINAVS 120 LE L+QRF I++A+ISV+H DQD+QR +LAGLVA+HLDR L +++IVAVG+GRNINA++ Sbjct: 66 LERDLIQRFNIKKAIISVNHKDQDKQRELLAGLVASHLDRILANNTIVAVGMGRNINAIA 125 Query: 121 EHAVSNTRRSATFVCGIGGYYRGGEAMNSDHICRRLASRFGGDSETLYAPALVNNAAMRD 180 EHA+S+T+RSATFVC IGG+YRGGE MN DHI R+LA RFGG SETLYAPALV +R+ Sbjct: 126 EHAISSTQRSATFVCAIGGFYRGGETMNPDHISRQLAIRFGGASETLYAPALVRGLQVRE 185 Query: 181 ALLANDAVRPTLDKARRAHVALIGVGDIHEDSPMVRMGWFSPQEILELKRHGAVGDMMGY 240 LL NDAV+ TLDKARRAHVAL+G+G+I+EDS MVR GWF+ EI EL+ GAVGD+MGY Sbjct: 186 ELLNNDAVKSTLDKARRAHVALVGIGNINEDSNMVRAGWFASDEIAELRHLGAVGDVMGY 245 Query: 241 DFINIQGEPIRTETHSRVIGLTVDDLRRIPDVIAVASESGKASAMLGALRTGTIKTLATT 300 FI I G P+ T RVIGL++D+LR+IP+VIAVASE+ K +A+LGALRTG I TLATT Sbjct: 246 HFIGIGGRPVVTPVQDRVIGLSLDELRQIPNVIAVASENTKTTAVLGALRTGAINTLATT 305 Query: 301 DSIAHTLLTLEEATR 315 ++IA ++++LE+ATR Sbjct: 306 EAIAQSIVSLEDATR 320 >ref|YP_110272.1| DNA-binding protein [Burkholderia pseudomallei K96243] emb|CAH37699.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] Length = 320 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 208/318 (65%), Positives = 258/318 (81%) Query: 1 MSMDELTRLATLYYVDGLTQQELSERFSISRASIARMLKRAQDEGIVEIRVRHHPGQTIE 60 M+ +ELT+LA YY+DGLTQ+EL+++F+ISR + R+LKRA +EGIVEIRVRHHP + Sbjct: 1 MTNEELTQLAKCYYIDGLTQEELAQKFAISRPKVGRLLKRAIEEGIVEIRVRHHPRAVQD 60 Query: 61 LEHALMQRFGIERALISVSHNDQDRQRAMLAGLVANHLDRSLTDDSIVAVGIGRNINAVS 120 LE L+ RFGI+RA+ISV H DQD QR +LAGLVA++LDR L D +IVAVG+GRN++AVS Sbjct: 61 LEQELVTRFGIQRAIISVDHKDQDSQRELLAGLVASYLDRVLADGAIVAVGMGRNVSAVS 120 Query: 121 EHAVSNTRRSATFVCGIGGYYRGGEAMNSDHICRRLASRFGGDSETLYAPALVNNAAMRD 180 HAVS T+R+ +FV IGG YRGGE MN+DHICRRLA+RFGG+SETLYAPALVN+ + Sbjct: 121 RHAVSTTQRNCSFVSAIGGSYRGGETMNADHICRRLAARFGGESETLYAPALVNDPQLFT 180 Query: 181 ALLANDAVRPTLDKARRAHVALIGVGDIHEDSPMVRMGWFSPQEILELKRHGAVGDMMGY 240 ALL ND VR +LDKARRA +AL+G+GDI EDS MVRMGWF+P+E+ E KR GAVGD+MGY Sbjct: 181 ALLENDVVRQSLDKARRASIALVGIGDILEDSNMVRMGWFTPEEMAEAKRAGAVGDIMGY 240 Query: 241 DFINIQGEPIRTETHSRVIGLTVDDLRRIPDVIAVASESGKASAMLGALRTGTIKTLATT 300 DFI+I G P T H RVIGLT++DL+RIP+VIA ASE KA+ +LGALR G I TLATT Sbjct: 241 DFIDIHGRPATTMLHGRVIGLTLEDLKRIPNVIATASEPTKATGILGALRAGVINTLATT 300 Query: 301 DSIAHTLLTLEEATRQAA 318 SIA T+L+L +AT A+ Sbjct: 301 QSIAQTVLSLAQATETAS 318 >ref|YP_996809.1| DeoR family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gb|ABM57791.1| transcriptional regulator, DeoR family [Verminephrobacter eiseniae EF01-2] Length = 333 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 215/316 (68%), Positives = 260/316 (82%) Query: 1 MSMDELTRLATLYYVDGLTQQELSERFSISRASIARMLKRAQDEGIVEIRVRHHPGQTIE 60 MS +ELTRLATLY++DG TQ ELS R ISRA++ RM+KRAQD GIVEIRVRHHP T++ Sbjct: 15 MSTEELTRLATLYFIDGQTQDELSRRLGISRATVGRMIKRAQDLGIVEIRVRHHPTLTVD 74 Query: 61 LEHALMQRFGIERALISVSHNDQDRQRAMLAGLVANHLDRSLTDDSIVAVGIGRNINAVS 120 LE L+ FGI RAL+SV H + D+ RA+LAGLVA LDR+L+D +IVAVG+GRN++AVS Sbjct: 75 LERELIDHFGISRALLSVDHANPDKCRALLAGLVATWLDRNLSDGAIVAVGMGRNVSAVS 134 Query: 121 EHAVSNTRRSATFVCGIGGYYRGGEAMNSDHICRRLASRFGGDSETLYAPALVNNAAMRD 180 EHA+S TRR+ATFVC IGG YRGGE MN DHICRRLA+RFGG+S+TLYAPA++++AA+R Sbjct: 135 EHAMSATRRAATFVCAIGGSYRGGETMNPDHICRRLAARFGGESQTLYAPAMIDDAAVRS 194 Query: 181 ALLANDAVRPTLDKARRAHVALIGVGDIHEDSPMVRMGWFSPQEILELKRHGAVGDMMGY 240 ALL ND VR +LDKARRA VAL+G+GD+ EDS MVRMGWFS QEI + KR G VGDMMGY Sbjct: 195 ALLENDTVRQSLDKARRADVALVGIGDMSEDSNMVRMGWFSAQEISQAKRAGTVGDMMGY 254 Query: 241 DFINIQGEPIRTETHSRVIGLTVDDLRRIPDVIAVASESGKASAMLGALRTGTIKTLATT 300 DFI+I G+P +T RVIGL+ +DLRRIP+VIA+A+ES K +AMLGALRTGTI TLATT Sbjct: 255 DFIDIHGQPAKTPIQDRVIGLSANDLRRIPNVIAIAAESSKVTAMLGALRTGTIDTLATT 314 Query: 301 DSIAHTLLTLEEATRQ 316 S A +L L +AT Q Sbjct: 315 ASNAIAVLHLNDATTQ 330 >ref|ZP_02465554.1| DNA-binding protein [Burkholderia thailandensis MSMB43] Length = 320 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 208/317 (65%), Positives = 256/317 (80%) Query: 1 MSMDELTRLATLYYVDGLTQQELSERFSISRASIARMLKRAQDEGIVEIRVRHHPGQTIE 60 M+ +ELT+LA YYVDGLTQ+EL+++F+ISR + R+LKRA +EGIVEIRVRHHP + Sbjct: 1 MTNEELTQLAKCYYVDGLTQEELAQKFAISRPKVGRLLKRAIEEGIVEIRVRHHPRAVQD 60 Query: 61 LEHALMQRFGIERALISVSHNDQDRQRAMLAGLVANHLDRSLTDDSIVAVGIGRNINAVS 120 LE L+ RFGI+RA+ISV H DQD QR +LAGLVA++LDR L D +IVAVG+GRN++AVS Sbjct: 61 LEQELVTRFGIQRAIISVDHKDQDSQRELLAGLVASYLDRVLADGTIVAVGMGRNVSAVS 120 Query: 121 EHAVSNTRRSATFVCGIGGYYRGGEAMNSDHICRRLASRFGGDSETLYAPALVNNAAMRD 180 HAVS T+R+ +FV IGG YRGGE MN+DHICRRLA+RFGG+SETLYAPALVN+ + Sbjct: 121 RHAVSTTQRNCSFVSAIGGSYRGGETMNADHICRRLAARFGGESETLYAPALVNDPQLFT 180 Query: 181 ALLANDAVRPTLDKARRAHVALIGVGDIHEDSPMVRMGWFSPQEILELKRHGAVGDMMGY 240 ALL ND VR +LDKARRA +AL+G+GDI EDS MVRMGWF+P+E+ E KR GAVGD+MGY Sbjct: 181 ALLENDVVRQSLDKARRASIALVGIGDILEDSNMVRMGWFTPEEMAEAKRAGAVGDIMGY 240 Query: 241 DFINIQGEPIRTETHSRVIGLTVDDLRRIPDVIAVASESGKASAMLGALRTGTIKTLATT 300 DFI+I G P T RVIGLT++DL+RIP+VIA ASE KA+ +LGALR G I TLATT Sbjct: 241 DFIDIHGRPATTMLRGRVIGLTLEDLKRIPNVIATASEPTKATGILGALRAGVINTLATT 300 Query: 301 DSIAHTLLTLEEATRQA 317 SIA T+L+L +AT A Sbjct: 301 QSIAQTVLSLAQATETA 317 >ref|ZP_04889305.1| putative transcriptional regulator [Burkholderia pseudomallei 1655] gb|EDU10289.1| putative transcriptional regulator [Burkholderia pseudomallei 1655] Length = 320 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 208/318 (65%), Positives = 257/318 (80%) Query: 1 MSMDELTRLATLYYVDGLTQQELSERFSISRASIARMLKRAQDEGIVEIRVRHHPGQTIE 60 M+ +ELT+LA YYVDGLTQ+EL+++F+ISR + R+LKRA +EGIVEIRVRHHP + Sbjct: 1 MTNEELTQLAKCYYVDGLTQEELAQKFAISRPKVGRLLKRAIEEGIVEIRVRHHPRAVQD 60 Query: 61 LEHALMQRFGIERALISVSHNDQDRQRAMLAGLVANHLDRSLTDDSIVAVGIGRNINAVS 120 LE L+ RFGI+RA+ISV H DQD QR +LAGLVA++LDR L D +IVAVG+GRN++AVS Sbjct: 61 LEQELVTRFGIQRAIISVDHKDQDSQRELLAGLVASYLDRVLADGAIVAVGMGRNVSAVS 120 Query: 121 EHAVSNTRRSATFVCGIGGYYRGGEAMNSDHICRRLASRFGGDSETLYAPALVNNAAMRD 180 HAVS T+R+ +FV IGG YRGGE MN+DHICRRLA+RFGG+SETLYAPALVN+ + Sbjct: 121 RHAVSTTQRNCSFVSAIGGSYRGGETMNADHICRRLAARFGGESETLYAPALVNDPQLFT 180 Query: 181 ALLANDAVRPTLDKARRAHVALIGVGDIHEDSPMVRMGWFSPQEILELKRHGAVGDMMGY 240 ALL ND VR +LDKARRA +AL+G+GDI EDS MVRMGWF+P+E+ E KR GAVGD+MGY Sbjct: 181 ALLENDVVRQSLDKARRASIALVGIGDILEDSNMVRMGWFTPEEMAEAKRAGAVGDIMGY 240 Query: 241 DFINIQGEPIRTETHSRVIGLTVDDLRRIPDVIAVASESGKASAMLGALRTGTIKTLATT 300 DFI+I G P T RVIGLT++DL+RIP+VIA ASE KA+ +LGALR G I TLATT Sbjct: 241 DFIDIHGRPATTMLRGRVIGLTLEDLKRIPNVIATASEPTKATGILGALRAGVINTLATT 300 Query: 301 DSIAHTLLTLEEATRQAA 318 SIA T+L+L +AT A+ Sbjct: 301 QSIAQTVLSLAQATETAS 318