BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0917.p (335 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_274918.1| ribose ABC transporter ATP-binding protein [Pse... 347 2e-93 gb|EGH53730.1| inner-membrane translocator [Pseudomonas syringae... 315 9e-84 ref|ZP_07264978.1| inner-membrane translocator [Pseudomonas syri... 314 1e-83 gb|EGH67725.1| inner-membrane translocator [Pseudomonas syringae... 314 1e-83 gb|EFW85068.1| ribose ABC transporter, ATP-binding protein [Pseu... 313 2e-83 >ref|YP_274918.1| ribose ABC transporter ATP-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gb|AAZ33662.1| ribose ABC transporter, ATP-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 627 Score = 347 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 204/309 (66%), Positives = 252/309 (81%), Gaps = 1/309 (0%) Query: 26 TSLRQAYARYGVLAALIVLCIALSLATPYFMTLENWTDILRQTSINGILAIGMTYVVLTG 85 + LR + R+G+ I+LC+ ++ A+ YFMT NW DILRQTSINGILA+GMTYV+LT Sbjct: 318 SRLRLSVDRFGLPLVFILLCLVMAFASEYFMTWRNWMDILRQTSINGILAVGMTYVILTK 377 Query: 86 GIDLSVGALLAFSGMVTAWLATGGGYPPAVAVLAGLGAGAGLGAISGLLVARMAVPSFVA 145 GIDLSVG++LAF+G+ +A +AT G Y AV AG+ AGA LG ++G +VA +++P FVA Sbjct: 378 GIDLSVGSILAFAGLCSALVATQG-YGLLAAVSAGMFAGAMLGVVNGFMVANLSIPPFVA 436 Query: 146 TLGMLSAARGATYIYNDGMPVSDLPPGLLSIGGGQILHVPVPIVIFGVVIAVSWFVLRFT 205 TLGMLS ARG T+I NDG PV+DLP L++G G++ + VPI+IF VV + W VLR+T Sbjct: 437 TLGMLSIARGMTFILNDGSPVTDLPEEYLALGIGRVGPIGVPIIIFAVVALIFWMVLRYT 496 Query: 206 VYGRYIYAVGGNARSAKTSGIDTRKVYFAVYVISGLLAGLAGVLLAARTTAALPQAGVSY 265 YGRY+YAVGGN +SA+TSGI RKV F+VYV+SGLLAGLAGV+L+ARTT+ALPQAG+SY Sbjct: 497 TYGRYVYAVGGNEKSARTSGIGVRKVMFSVYVVSGLLAGLAGVVLSARTTSALPQAGMSY 556 Query: 266 ELDAIAAVVIGGTSLSGGTGTLGGTVVGALLIGVINNGLNLLGVSSYYQQVIKGVIIVGA 325 ELDAIAAVVIGGTSLSGGTG++ GT+ GALLIGVINNGLNLLGVSSYYQQV KG+IIV A Sbjct: 557 ELDAIAAVVIGGTSLSGGTGSIVGTLFGALLIGVINNGLNLLGVSSYYQQVAKGLIIVFA 616 Query: 326 VLLDSSRKK 334 VL+D RKK Sbjct: 617 VLIDVWRKK 625 >gb|EGH53730.1| inner-membrane translocator [Pseudomonas syringae Cit 7] Length = 325 Score = 315 bits (806), Expect = 9e-84, Method: Composition-based stats. Identities = 209/324 (64%), Positives = 260/324 (80%), Gaps = 5/324 (1%) Query: 15 LSAGRLASPSFTS----LRQAYARYGVLAALIVLCIALSLATPYFMTLENWTDILRQTSI 70 ++A + +P+ TS LR + R+G+ I+LC+ L+ A+ YFMT NW DILRQTSI Sbjct: 1 MNAKTIIAPASTSPRSRLRLSLDRFGLPLVFILLCLVLAFASEYFMTWRNWMDILRQTSI 60 Query: 71 NGILAIGMTYVVLTGGIDLSVGALLAFSGMVTAWLATGGGYPPAVAVLAGLGAGAGLGAI 130 NGILA+GMTYV+LT GIDLSVG++LAF+G+ +A +AT G Y AV AG+ AGA LG + Sbjct: 61 NGILAVGMTYVILTKGIDLSVGSILAFAGLCSALVATQG-YGLLAAVSAGMFAGAMLGVV 119 Query: 131 SGLLVARMAVPSFVATLGMLSAARGATYIYNDGMPVSDLPPGLLSIGGGQILHVPVPIVI 190 +G +VA +++P FVATLGMLS ARG T+I NDG PV+DLP L++G G++ + VPI+I Sbjct: 120 NGFMVANLSIPPFVATLGMLSIARGMTFILNDGSPVTDLPEEYLALGIGRVGPIGVPIII 179 Query: 191 FGVVIAVSWFVLRFTVYGRYIYAVGGNARSAKTSGIDTRKVYFAVYVISGLLAGLAGVLL 250 F VV + W VLR+T YGRY+YAVGGN +SA+TSGI RKV F+VYV+SGLLAGLAGV+L Sbjct: 180 FAVVALIFWMVLRYTTYGRYVYAVGGNEKSARTSGIGVRKVMFSVYVVSGLLAGLAGVVL 239 Query: 251 AARTTAALPQAGVSYELDAIAAVVIGGTSLSGGTGTLGGTVVGALLIGVINNGLNLLGVS 310 +ARTT+ALPQAG+SYELDAIAAVVIGGTSLSGGTG++ GT+ GALLIGVINNGLNLLGVS Sbjct: 240 SARTTSALPQAGMSYELDAIAAVVIGGTSLSGGTGSIVGTLFGALLIGVINNGLNLLGVS 299 Query: 311 SYYQQVIKGVIIVGAVLLDSSRKK 334 SYYQQV KG+IIV AVL+D RKK Sbjct: 300 SYYQQVAKGLIIVFAVLIDVWRKK 323 >ref|ZP_07264978.1| inner-membrane translocator [Pseudomonas syringae pv. syringae 642] Length = 325 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 208/314 (66%), Positives = 255/314 (81%), Gaps = 2/314 (0%) Query: 21 ASPSFTSLRQAYARYGVLAALIVLCIALSLATPYFMTLENWTDILRQTSINGILAIGMTY 80 ASP + LR + R+G+ I+LC+ L+ A+ YFMT NW DILRQTSINGILA+GMTY Sbjct: 12 ASPR-SRLRLSLDRFGLPLVFILLCLVLAFASEYFMTWRNWMDILRQTSINGILAVGMTY 70 Query: 81 VVLTGGIDLSVGALLAFSGMVTAWLATGGGYPPAVAVLAGLGAGAGLGAISGLLVARMAV 140 V+LT GIDLSVG++LAF+G+ +A +AT G Y AV AG+ AGA LG ++G +VA +++ Sbjct: 71 VILTKGIDLSVGSILAFAGLCSALVATQG-YGLLAAVSAGMFAGAMLGVVNGFMVANLSI 129 Query: 141 PSFVATLGMLSAARGATYIYNDGMPVSDLPPGLLSIGGGQILHVPVPIVIFGVVIAVSWF 200 P FVATLGMLS ARG T+I NDG PV+DLP L++G G++ + VPI+IF VV + W Sbjct: 130 PPFVATLGMLSIARGMTFILNDGSPVTDLPEEYLALGIGRVGPIGVPIIIFAVVALIFWM 189 Query: 201 VLRFTVYGRYIYAVGGNARSAKTSGIDTRKVYFAVYVISGLLAGLAGVLLAARTTAALPQ 260 VLR+T YGRY+YAVGGN +SA+TSGI RKV F+VYV+SGLLAGLAGV+L+ARTT+ALPQ Sbjct: 190 VLRYTTYGRYVYAVGGNEKSARTSGIGVRKVMFSVYVVSGLLAGLAGVVLSARTTSALPQ 249 Query: 261 AGVSYELDAIAAVVIGGTSLSGGTGTLGGTVVGALLIGVINNGLNLLGVSSYYQQVIKGV 320 AG+SYELDAIAAVVIGGTSLSGGTG++ GT+ GALLIGVINNGLNLLGVSSYYQQV KG+ Sbjct: 250 AGMSYELDAIAAVVIGGTSLSGGTGSIVGTLFGALLIGVINNGLNLLGVSSYYQQVAKGL 309 Query: 321 IIVGAVLLDSSRKK 334 IIV AVL+D RKK Sbjct: 310 IIVFAVLIDVWRKK 323 >gb|EGH67725.1| inner-membrane translocator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 325 Score = 314 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 204/309 (66%), Positives = 252/309 (81%), Gaps = 1/309 (0%) Query: 26 TSLRQAYARYGVLAALIVLCIALSLATPYFMTLENWTDILRQTSINGILAIGMTYVVLTG 85 + LR + R+G+ I+LC+ ++ A+ YFMT NW DILRQTSINGILA+GMTYV+LT Sbjct: 16 SRLRLSLDRFGLPLVFILLCVVMAFASEYFMTWRNWMDILRQTSINGILAVGMTYVILTK 75 Query: 86 GIDLSVGALLAFSGMVTAWLATGGGYPPAVAVLAGLGAGAGLGAISGLLVARMAVPSFVA 145 GIDLSVG++LAF+G+ +A +AT G Y AV AG+ AGA LG ++G +VA +++P FVA Sbjct: 76 GIDLSVGSILAFAGLCSALVATQG-YGLLAAVSAGMFAGAMLGVVNGFMVANLSIPPFVA 134 Query: 146 TLGMLSAARGATYIYNDGMPVSDLPPGLLSIGGGQILHVPVPIVIFGVVIAVSWFVLRFT 205 TLGMLS ARG T+I NDG PV+DLP L++G G++ + VPI+IF VV + W VLR+T Sbjct: 135 TLGMLSIARGMTFILNDGSPVTDLPEEYLALGVGKVGPIGVPIIIFAVVALIFWMVLRYT 194 Query: 206 VYGRYIYAVGGNARSAKTSGIDTRKVYFAVYVISGLLAGLAGVLLAARTTAALPQAGVSY 265 YGRY+YAVGGN +SA+TSGI RKV F+VYV+SGLLAGLAGV+L+ARTT+ALPQAG+SY Sbjct: 195 TYGRYVYAVGGNEKSARTSGIGVRKVMFSVYVVSGLLAGLAGVVLSARTTSALPQAGMSY 254 Query: 266 ELDAIAAVVIGGTSLSGGTGTLGGTVVGALLIGVINNGLNLLGVSSYYQQVIKGVIIVGA 325 ELDAIAAVVIGGTSLSGGTG++ GT+ GALLIGVINNGLNLLGVSSYYQQV KG+IIV A Sbjct: 255 ELDAIAAVVIGGTSLSGGTGSIVGTLFGALLIGVINNGLNLLGVSSYYQQVAKGLIIVFA 314 Query: 326 VLLDSSRKK 334 VL+D RKK Sbjct: 315 VLIDVWRKK 323 >gb|EFW85068.1| ribose ABC transporter, ATP-binding protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 328 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 204/309 (66%), Positives = 252/309 (81%), Gaps = 1/309 (0%) Query: 26 TSLRQAYARYGVLAALIVLCIALSLATPYFMTLENWTDILRQTSINGILAIGMTYVVLTG 85 + LR + R+G+ I+LC+ ++ A+ YFMT NW DILRQTSINGILA+GMTYV+LT Sbjct: 19 SRLRLSVDRFGLPLVFILLCLVMAFASEYFMTWRNWMDILRQTSINGILAVGMTYVILTK 78 Query: 86 GIDLSVGALLAFSGMVTAWLATGGGYPPAVAVLAGLGAGAGLGAISGLLVARMAVPSFVA 145 GIDLSVG++LAF+G+ +A +AT G Y AV AG+ AGA LG ++G +VA +++P FVA Sbjct: 79 GIDLSVGSILAFAGLCSALVATQG-YGLLAAVSAGMFAGAMLGVVNGFMVANLSIPPFVA 137 Query: 146 TLGMLSAARGATYIYNDGMPVSDLPPGLLSIGGGQILHVPVPIVIFGVVIAVSWFVLRFT 205 TLGMLS ARG T+I NDG PV+DLP L++G G++ + VPI+IF VV + W VLR+T Sbjct: 138 TLGMLSIARGMTFILNDGSPVTDLPEEYLALGIGRVGPIGVPIIIFAVVALIFWMVLRYT 197 Query: 206 VYGRYIYAVGGNARSAKTSGIDTRKVYFAVYVISGLLAGLAGVLLAARTTAALPQAGVSY 265 YGRY+YAVGGN +SA+TSGI RKV F+VYV+SGLLAGLAGV+L+ARTT+ALPQAG+SY Sbjct: 198 TYGRYVYAVGGNEKSARTSGIGVRKVMFSVYVVSGLLAGLAGVVLSARTTSALPQAGMSY 257 Query: 266 ELDAIAAVVIGGTSLSGGTGTLGGTVVGALLIGVINNGLNLLGVSSYYQQVIKGVIIVGA 325 ELDAIAAVVIGGTSLSGGTG++ GT+ GALLIGVINNGLNLLGVSSYYQQV KG+IIV A Sbjct: 258 ELDAIAAVVIGGTSLSGGTGSIVGTLFGALLIGVINNGLNLLGVSSYYQQVAKGLIIVFA 317 Query: 326 VLLDSSRKK 334 VL+D RKK Sbjct: 318 VLIDVWRKK 326