BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0916.p (330 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004487603.1| periplasmic binding protein/LacI transcripti... 482 e-134 ref|YP_001565596.1| periplasmic-binding protein/LacI transcripti... 481 e-134 ref|ZP_08872818.1| periplasmic-binding protein/LacI transcriptio... 401 e-110 ref|ZP_08874128.1| periplasmic-binding protein/LacI transcriptio... 379 e-103 ref|YP_996812.1| periplasmic-binding protein/LacI transcriptiona... 367 2e-99 >ref|YP_004487603.1| periplasmic binding protein/LacI transcriptional regulator [Delftia sp. Cs1-4] gb|AEF89248.1| periplasmic binding protein/LacI transcriptional regulator [Delftia sp. Cs1-4] Length = 351 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 258/308 (83%), Positives = 281/308 (91%) Query: 23 KPLRIGAAVYGLKGEFMQMWSNQLKAHPAVQDGSVQVTVFDGNYDALTQSNQFDTMILQK 82 KP RIGAAVYGLKGEFMQMW+ +LKAHPAV+DG+VQ+TVFDGNYDALTQSNQFDTMI QK Sbjct: 44 KPYRIGAAVYGLKGEFMQMWTKELKAHPAVKDGTVQITVFDGNYDALTQSNQFDTMITQK 103 Query: 83 YDAIIFVPIDLKAGAAPVQKAVKAGIPVIGSNTRVQGDVLTSYVGNDDVVAGRLEAEALM 142 YD I+FVPIDLKAGAAPVQKAVKAGIPV+GSNTRVQGDVLTSYVGNDDVVAGR++AEALM Sbjct: 104 YDGILFVPIDLKAGAAPVQKAVKAGIPVVGSNTRVQGDVLTSYVGNDDVVAGRMQAEALM 163 Query: 143 KAIGGKGNIVMIEGPIGQSAQIERARGNDEVLARNKDVKVLARKTGNWSRAESMALMENW 202 KAIGGKGNIV+IEGPIGQSAQIERARGNDEVLAR+KDVKVLARKT NWSRAESM LMENW Sbjct: 164 KAIGGKGNIVVIEGPIGQSAQIERARGNDEVLARHKDVKVLARKTANWSRAESMGLMENW 223 Query: 203 LTAHPGQIKGVLAQNDDEALGALQAIKAKGIDPKTIPVVGIDGIADAIAAVKRGEMVTQF 262 LTA PGQI+GV+AQNDDEALGA+QAIK KGID KTIPVVG+DG+A AI AVKRGEM T F Sbjct: 224 LTAFPGQIQGVIAQNDDEALGAVQAIKTKGIDIKTIPVVGVDGVAAAITAVKRGEMTTNF 283 Query: 263 QDAQAQAQGALDVALRAIKGPSYQPRSTIWTEYGDKLPWKGGTEKSYTVPWTTITPENAD 322 QDAQAQAQGALDV LR + GPSY+PRS +W+EY +PW GT KSY VPWT I P NAD Sbjct: 284 QDAQAQAQGALDVLLRQLVGPSYRPRSVVWSEYAQAMPWGDGTAKSYEVPWTAIVPANAD 343 Query: 323 AFLKKVKK 330 AFL+KV+K Sbjct: 344 AFLQKVRK 351 >ref|YP_001565596.1| periplasmic-binding protein/LacI transcriptional regulator [Delftia acidovorans SPH-1] gb|ABX37211.1| periplasmic binding protein/LacI transcriptional regulator [Delftia acidovorans SPH-1] Length = 353 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 256/308 (83%), Positives = 280/308 (90%) Query: 23 KPLRIGAAVYGLKGEFMQMWSNQLKAHPAVQDGSVQVTVFDGNYDALTQSNQFDTMILQK 82 KP RIGAAVYGLKGEFMQMW+ +LKAHPAV+DG+VQ+TVFDGNYDALTQSNQFDTMI QK Sbjct: 46 KPYRIGAAVYGLKGEFMQMWTKELKAHPAVKDGTVQITVFDGNYDALTQSNQFDTMITQK 105 Query: 83 YDAIIFVPIDLKAGAAPVQKAVKAGIPVIGSNTRVQGDVLTSYVGNDDVVAGRLEAEALM 142 YD I+FVPIDLKAGAAPV KAVKAGIPV+GSNTRVQG+VLTSYVGNDDVVAGR++AEALM Sbjct: 106 YDGILFVPIDLKAGAAPVHKAVKAGIPVVGSNTRVQGEVLTSYVGNDDVVAGRMQAEALM 165 Query: 143 KAIGGKGNIVMIEGPIGQSAQIERARGNDEVLARNKDVKVLARKTGNWSRAESMALMENW 202 KAIGGKGNIV+IEGPIGQSAQIERARGNDEVLAR+KDVKVLARKT NWSRAESM LMENW Sbjct: 166 KAIGGKGNIVVIEGPIGQSAQIERARGNDEVLARHKDVKVLARKTANWSRAESMGLMENW 225 Query: 203 LTAHPGQIKGVLAQNDDEALGALQAIKAKGIDPKTIPVVGIDGIADAIAAVKRGEMVTQF 262 LTA PGQI+GV+AQNDDEALGA+QAIK KGID KTIPVVG+DG+A AI AVKRGEM T F Sbjct: 226 LTAFPGQIQGVIAQNDDEALGAVQAIKTKGIDIKTIPVVGVDGVAAAITAVKRGEMTTNF 285 Query: 263 QDAQAQAQGALDVALRAIKGPSYQPRSTIWTEYGDKLPWKGGTEKSYTVPWTTITPENAD 322 QDAQAQAQGALDV LR + GPSY+PRS +W+EY +PW GT KSY VPWT I P NAD Sbjct: 286 QDAQAQAQGALDVLLRQLVGPSYRPRSVVWSEYAQAMPWGDGTAKSYEVPWTAIVPANAD 345 Query: 323 AFLKKVKK 330 AFL+KV+K Sbjct: 346 AFLQKVRK 353 >ref|ZP_08872818.1| periplasmic-binding protein/LacI transcriptional regulator [Verminephrobacter sp. At4] Length = 334 Score = 401 bits (1030), Expect = e-110, Method: Composition-based stats. Identities = 203/311 (65%), Positives = 249/311 (80%), Gaps = 1/311 (0%) Query: 21 QNKPLRIGAAVYGLKGEFMQMWSNQLKAHPAVQDGSVQVTVFDGNYDALTQSNQFDTMIL 80 Q KP +IGAAVYGLKGEFMQ+W N LK HPAV+DGSV++T+FDG YDALTQ+NQF+TM+ Sbjct: 24 QKKPYKIGAAVYGLKGEFMQLWVNALKEHPAVKDGSVKLTIFDGKYDALTQNNQFETMVT 83 Query: 81 QKYDAIIFVPIDLKAGAAPVQKAVKAGIPVIGSNTRVQGDVLTSYVGNDDVVAGRLEAEA 140 QK+D I+FVPID++AGA V+KA +A IPV+GSN RV D L SYVG+DD VAG LEAEA Sbjct: 84 QKFDGILFVPIDIQAGAQAVEKAAEAKIPVVGSNARVLSDKLVSYVGSDDTVAGALEAEA 143 Query: 141 LMKAIGGKGNIVMIEGPIGQSAQIERARGNDEVLARNKDVKVLARKTGNWSRAESMALME 200 ++KA+GGKGN+V+IEGPIGQSAQIER +GN LA+ KDVKVL +T NWSRAE+++LME Sbjct: 144 VIKAMGGKGNVVIIEGPIGQSAQIERRKGNQAALAKYKDVKVLEMRTANWSRAEALSLME 203 Query: 201 NWLTAHPGQIKGVLAQNDDEALGALQAIKAKGIDPKTIPVVGIDGIADAIAAVKRGEMVT 260 NWLTAH G+I GV+ QND+ ALGA++A+KAKG+ PK+IPV GIDG+ DAI AVK G M++ Sbjct: 204 NWLTAHAGKIHGVIGQNDEMALGAIEALKAKGLSPKSIPVAGIDGVTDAIRAVKEGHMMS 263 Query: 261 QFQDAQAQAQGALDVALRAIKGPSYQPRSTIWTEYGDK-LPWKGGTEKSYTVPWTTITPE 319 QDAQ QAQG LDV LR I GP Y+PR+ +W +Y + L W GT + Y VPWT IT + Sbjct: 264 ILQDAQGQAQGGLDVLLRHIVGPGYEPRAALWNDYASEGLSWGDGTARQYNVPWTPITLQ 323 Query: 320 NADAFLKKVKK 330 NADA L K K Sbjct: 324 NADALLAKRSK 334 >ref|ZP_08874128.1| periplasmic-binding protein/LacI transcriptional regulator [Verminephrobacter sp. At4] Length = 337 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 189/303 (62%), Positives = 241/303 (79%), Gaps = 1/303 (0%) Query: 26 RIGAAVYGLKGEFMQMWSNQLKAHPAVQDGSVQVTVFDGNYDALTQSNQFDTMILQKYDA 85 +IGAAVYGLK EFMQ+W + LK HP V+DGSV++TVFDG YDALTQ+NQF+TMI QKYD Sbjct: 33 KIGAAVYGLKAEFMQLWVHALKEHPLVKDGSVKLTVFDGKYDALTQNNQFETMITQKYDG 92 Query: 86 IIFVPIDLKAGAAPVQKAVKAGIPVIGSNTRVQGDVLTSYVGNDDVVAGRLEAEALMKAI 145 I+FVPID++AGA V KA +A IPV+GSN RV D L SYVG++DV+AG ++AEA+++A+ Sbjct: 93 ILFVPIDVQAGAEAVSKASQANIPVVGSNARVNSDKLLSYVGSNDVIAGEMQAEAVIRAM 152 Query: 146 GGKGNIVMIEGPIGQSAQIERARGNDEVLARNKDVKVLARKTGNWSRAESMALMENWLTA 205 GGKGN+V++EGPIGQS QIER RGN LA+ +VK+L KT NWSRAE++AL ENWLTA Sbjct: 153 GGKGNVVILEGPIGQSGQIERRRGNQNTLAQYPNVKLLEMKTANWSRAEALALTENWLTA 212 Query: 206 HPGQIKGVLAQNDDEALGALQAIKAKGIDPKTIPVVGIDGIADAIAAVKRGEMVTQFQDA 265 H G+I G++ QND+ ALGA++A+KAKGIDPK+IP GIDG++DA+ AVK G MV+ QDA Sbjct: 213 HAGKINGIIGQNDEMALGAIEAVKAKGIDPKSIPTAGIDGVSDALRAVKVGTMVSVLQDA 272 Query: 266 QAQAQGALDVALRAIKGPSYQPRSTIWTEYGDK-LPWKGGTEKSYTVPWTTITPENADAF 324 AQAQG+LDV LR + G Y+PR+ +WT+YG L W G + Y +PWT ITP+NAD Sbjct: 273 NAQAQGSLDVLLRKLIGADYKPRAALWTQYGTAGLKWDDGAARVYNIPWTPITPQNADVL 332 Query: 325 LKK 327 L + Sbjct: 333 LAQ 335 >ref|YP_996812.1| periplasmic-binding protein/LacI transcriptional regulator [Verminephrobacter eiseniae EF01-2] gb|ABM57794.1| periplasmic binding protein/LacI transcriptional regulator [Verminephrobacter eiseniae EF01-2] Length = 358 Score = 367 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 188/308 (61%), Positives = 242/308 (78%), Gaps = 1/308 (0%) Query: 23 KPLRIGAAVYGLKGEFMQMWSNQLKAHPAVQDGSVQVTVFDGNYDALTQSNQFDTMILQK 82 K ++GAAVYGLK EF Q+W N LK HP V+DG+V++TVFDG YDALTQ+NQF+TMI QK Sbjct: 51 KTWKVGAAVYGLKAEFAQLWVNALKKHPLVKDGTVKLTVFDGKYDALTQNNQFETMITQK 110 Query: 83 YDAIIFVPIDLKAGAAPVQKAVKAGIPVIGSNTRVQGDVLTSYVGNDDVVAGRLEAEALM 142 YD I+FVPIDL+AGA V KA +A IPV+GSN RV D L SYVG++DV+AG ++A+A++ Sbjct: 111 YDGILFVPIDLQAGADAVSKAAEANIPVVGSNGRVNSDKLLSYVGSNDVIAGAMQAQAVV 170 Query: 143 KAIGGKGNIVMIEGPIGQSAQIERARGNDEVLARNKDVKVLARKTGNWSRAESMALMENW 202 A+GGKGN+V++EGPIGQS Q+ER +GN VLA+ +VKVL KT NWSRAE+++L ENW Sbjct: 171 DAMGGKGNVVILEGPIGQSGQVERRQGNLSVLAKYPNVKVLEMKTANWSRAEALSLTENW 230 Query: 203 LTAHPGQIKGVLAQNDDEALGALQAIKAKGIDPKTIPVVGIDGIADAIAAVKRGEMVTQF 262 LTAH G+I G++ QND+ ALGA++A+KAKG+DPKTIP GIDG++DA+ AVK G M + Sbjct: 231 LTAHAGKINGIIGQNDEMALGAIEAVKAKGLDPKTIPTAGIDGVSDAVRAVKAGIMASVL 290 Query: 263 QDAQAQAQGALDVALRAIKGPSYQPRSTIWTEYGDK-LPWKGGTEKSYTVPWTTITPENA 321 QDA AQ+QGALDV LR + G SY+PRS +W +YG L W G ++Y +PWT IT +NA Sbjct: 291 QDASAQSQGALDVLLRKLIGASYKPRSAMWAQYGAAGLQWDDGAARAYNIPWTPITLQNA 350 Query: 322 DAFLKKVK 329 DA L + K Sbjct: 351 DALLAQRK 358