BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0911.p (517 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774520.1| methyl-accepting chemotaxis transducer trans... 586 e-165 ref|YP_003052475.1| methyl-accepting chemotaxis sensory transduc... 296 6e-78 ref|YP_004472236.1| methyl-accepting chemotaxis sensory transduc... 254 2e-65 ref|YP_004235924.1| methyl-accepting chemotaxis sensory transduc... 253 5e-65 ref|YP_004382315.1| chemotaxis sensory transducer [Pseudomonas m... 248 3e-63 >ref|YP_003774520.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62612.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 517 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 388/517 (75%), Positives = 440/517 (85%) Query: 1 MSRPGFRLLTVGQRLFVLILLASMGLVATAIVSLRQIGNVYEAASYAQVNTVPSVTTLDD 60 MSRPG R L+VGQRL VLILLA +GLVATA VSLRQI NVY AA+YAQVNTVPSVTTLDD Sbjct: 1 MSRPGLRTLSVGQRLSVLILLALLGLVATAAVSLRQIENVYTAANYAQVNTVPSVTTLDD 60 Query: 61 AQAAFNGMRERVYFYLINLDPADRARLVQEMDQLRARMNGHLKTYGDAYISDETDGAMLA 120 AQAAFN ++ R+Y YL+N DP DR+RL++EMD RARM HL TY +AYI+DETDGAMLA Sbjct: 61 AQAAFNAIQGRIYQYLVNPDPRDRSRLIKEMDVQRARMQRHLHTYANAYITDETDGAMLA 120 Query: 121 EVHARIAGFEEVRNRLLVESGRSLVHDSHTALGLEFRTAIDSVQASFARHRSYNVALGEA 180 + A IA FEEV RLL + V DS LEFR AID+VQASFARHRSYNVALG+A Sbjct: 121 DDRAHIAAFEEVVRRLLAVAEEDRVEDSLGLSVLEFRAAIDTVQASFARHRSYNVALGDA 180 Query: 181 SALSAREIISHALESVAVVAGAVLLTLIAAGWLLTRTLLHQMGGEPGEVVTVMQRLSDGD 240 SAL+AREII ALE+VA+VAG VLL L+ AGWLLTRTLL QMGGEPG+VVTVMQRLSDGD Sbjct: 181 SALTAREIIGQALETVALVAGGVLLILLGAGWLLTRTLLRQMGGEPGDVVTVMQRLSDGD 240 Query: 241 LLQQIRLKPGCADSMMHAIRKMVERLGRVVAEVRGNAEGMAESAAEVSATAQLLATAATE 300 L+Q I LKPGC DSMMHAI+KM+ RL +VV EVRGNA+G+ +A EVSATAQ L+ A+TE Sbjct: 241 LVQTITLKPGCRDSMMHAIQKMMTRLAQVVGEVRGNADGLVSTAEEVSATAQSLSRASTE 300 Query: 301 QASGVAQTSTALSQIHAAILTTADNARLTDQIASAAAVEAHQCAQTVGEMVAAIQVIAGK 360 QA+GV QTS AL+QIHA + +TA NARLTDQIA+AAA+EA QCA+TV +MVAAIQ IAGK Sbjct: 301 QANGVEQTSEALAQIHALLQSTAQNARLTDQIAAAAALEARQCAETVKQMVAAIQQIAGK 360 Query: 361 IAIIDDIAYQTNLLALNATIEAAHAGQHGAGFAVVAGEVRRLAERSQAAAEEIDQVARDH 420 IA+IDDIAYQTNLLALNATIEAAHAG+HG+GFAVVA EVRRLAERSQ+AA+EID+VAR + Sbjct: 361 IAVIDDIAYQTNLLALNATIEAAHAGEHGSGFAVVAAEVRRLAERSQSAAQEIDEVARAN 420 Query: 421 TVLASRVERQLGDMVPTIARTSALVQEIVQSSEQQSAAVSQISAAASQLAQIVQQNSISS 480 LA ERQL DMVPTI RTS LVQ+IVQSSEQQS AVSQIS AASQLAQ++QQNS+SS Sbjct: 421 VTLACAAERQLSDMVPTITRTSVLVQDIVQSSEQQSTAVSQISTAASQLAQVIQQNSLSS 480 Query: 481 EELAVTSEELNRRATTLRSSVGFFQCQLARGMQASLA 517 EELAVTSEELNRRA L+++VGFFQCQLARGMQA LA Sbjct: 481 EELAVTSEELNRRALLLQTAVGFFQCQLARGMQARLA 517 >ref|YP_003052475.1| methyl-accepting chemotaxis sensory transducer [Methylovorus glucosetrophus SIP3-4] gb|ACT51948.1| methyl-accepting chemotaxis sensory transducer [Methylovorus glucosetrophus SIP3-4] Length = 544 Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats. Identities = 197/499 (39%), Positives = 313/499 (62%), Gaps = 1/499 (0%) Query: 9 LTVGQRLFVLILLASMGLVATAIVSLRQIGNVYEAASYAQVNTVPSVTTLDDAQAAFNGM 68 +TV +++ +L+ +A +GL+ A I V+E +Y +NTVPS+ LDD +++ + Sbjct: 3 VTVAKKMILLLSIAVIGLIVLAFSGQYYINQVFEKTNYVTINTVPSIIVLDDLSKSYSDL 62 Query: 69 RERVYFYLINLDPADRARLVQEMDQLRARMNGHLKTYGDAYISDETDGAMLAEVHARIAG 128 +E VY ++IN D A A+L + + + RA+M+ L Y I+D D +++ ++ + + Sbjct: 63 QETVYQHVINTDDATMAQLDKTVLEHRAKMDEALDKYEKNNITDAKDASLIKDIRSALKE 122 Query: 129 FEEVRNRLLVESGRSLVHDSHTALGLEFRTAIDSVQASFARHRSYNVALGEASALSAREI 188 ++ VR +LL S + + ++ + V R YNV +G ++ A I Sbjct: 123 YDPVREQLLSLSRANKIEEARK-YTFASKDVFAKVHEMINADRQYNVEIGNNASAEAVAI 181 Query: 189 ISHALESVAVVAGAVLLTLIAAGWLLTRTLLHQMGGEPGEVVTVMQRLSDGDLLQQIRLK 248 A+ + ++ VL+ + G L+TR LL Q+GGEP V R++ GDL Q+ K Sbjct: 182 QRTAVLNSMIITVVVLIVVAIIGVLITRDLLKQLGGEPNYAAEVATRVASGDLSMQVETK 241 Query: 249 PGCADSMMHAIRKMVERLGRVVAEVRGNAEGMAESAAEVSATAQLLATAATEQASGVAQT 308 PG SM+ A++ MVE+L +V+EVR A+G+A ++ +VS+TAQ L+ A EQA+ V QT Sbjct: 242 PGDTTSMLAAMKAMVEKLSGIVSEVRSAADGIASASEQVSSTAQSLSQATNEQAASVEQT 301 Query: 309 STALSQIHAAILTTADNARLTDQIASAAAVEAHQCAQTVGEMVAAIQVIAGKIAIIDDIA 368 S ++ ++ A+I +NA++T+ I++ A+ +A++ V + V A++ IA KI+IIDDIA Sbjct: 302 SASVEEMSASINQNTENAKVTEGISAKASTDANEGGAAVVQTVEAMKSIANKISIIDDIA 361 Query: 369 YQTNLLALNATIEAAHAGQHGAGFAVVAGEVRRLAERSQAAAEEIDQVARDHTVLASRVE 428 YQTNLLALNA IEAA AG+HG GFAVVA EVR+LAERSQ AA+EI ++A + A + Sbjct: 362 YQTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERSQVAAQEIGELASNSVGTAEKAG 421 Query: 429 RQLGDMVPTIARTSALVQEIVQSSEQQSAAVSQISAAASQLAQIVQQNSISSEELAVTSE 488 + L +MVP I +TS LVQEI +S++QS+ +QI+ A +Q++QI QQN+ SSEELA T+E Sbjct: 422 KLLEEMVPNINKTSDLVQEITAASQEQSSGAAQINVAMNQMSQITQQNASSSEELAATAE 481 Query: 489 ELNRRATTLRSSVGFFQCQ 507 E++ +A L+ + FF + Sbjct: 482 EMSGQAEQLQQLIAFFNIK 500 >ref|YP_004472236.1| methyl-accepting chemotaxis sensory transducer [Pseudomonas fulva 12-X] gb|AEF20142.1| methyl-accepting chemotaxis sensory transducer [Pseudomonas fulva 12-X] Length = 547 Score = 254 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 155/333 (46%), Positives = 231/333 (69%) Query: 173 YNVALGEASALSAREIISHALESVAVVAGAVLLTLIAAGWLLTRTLLHQMGGEPGEVVTV 232 Y L + A A ++ + ++++ G + I GWL+TR+LL Q+GGEP V Sbjct: 166 YQSDLMDQDADGATQLYEESRLQLSLIGGVAIFISILLGWLITRSLLKQLGGEPAYAAEV 225 Query: 233 MQRLSDGDLLQQIRLKPGCADSMMHAIRKMVERLGRVVAEVRGNAEGMAESAAEVSATAQ 292 + R+++GDL Q+ +KP SM+ +I M RL +++AEVR +A+ ++ ++ E+S+TAQ Sbjct: 226 VTRIAEGDLRTQVMVKPNDTTSMLASISNMSARLTQIIAEVRSSADSLSSASEEISSTAQ 285 Query: 293 LLATAATEQASGVAQTSTALSQIHAAILTTADNARLTDQIASAAAVEAHQCAQTVGEMVA 352 ++ AA+EQA+ V +TS ++ Q+ A+I +NAR+TD +AS A+ EA + Q V + V Sbjct: 286 SMSQAASEQAASVEETSASMEQMSASISQNTENARVTDGMASKASNEASEGGQAVKDTVR 345 Query: 353 AIQVIAGKIAIIDDIAYQTNLLALNATIEAAHAGQHGAGFAVVAGEVRRLAERSQAAAEE 412 A++ IA KI I+DDIAYQTNLLALNA IEAA AG+HG GFAVVA EVR+LAERSQ AA+E Sbjct: 346 AMKTIADKIGIVDDIAYQTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERSQVAAQE 405 Query: 413 IDQVARDHTVLASRVERQLGDMVPTIARTSALVQEIVQSSEQQSAAVSQISAAASQLAQI 472 I +VA++ LA R L ++VP+IA+TS LVQEI +S++QS+ V QIS A +QL+++ Sbjct: 406 IGEVAKNSVALAERAGTLLDEIVPSIAKTSDLVQEIAAASDEQSSGVGQISTAMNQLSEL 465 Query: 473 VQQNSISSEELAVTSEELNRRATTLRSSVGFFQ 505 QQN+ +SEELA T+EE++ +A L+ + FF+ Sbjct: 466 TQQNASASEELAATAEEMSGQAEQLQQLMDFFR 498 >ref|YP_004235924.1| methyl-accepting chemotaxis sensory transducer [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX47357.1| methyl-accepting chemotaxis sensory transducer [Acidovorax avenae subsp. avenae ATCC 19860] Length = 551 Score = 253 bits (647), Expect = 5e-65, Method: Composition-based stats. Identities = 199/501 (39%), Positives = 291/501 (58%), Gaps = 3/501 (0%) Query: 6 FRLLTVGQRLFVLILLASMGLVATAIVSLRQIGNVYEAASYAQVNTVPSVTTLDDAQAAF 65 F L + +LF L+ +V ++ Q+ V ++ N +PSV T+ +++ Sbjct: 2 FGPLKLSTKLFGAFLIVLALMVGLGAYAINQLATVNQSTEDIATNWLPSVRTIMLSKSNI 61 Query: 66 NGMRERVYFYLINLDPADRARLVQEMDQLRARMNGHLKTYGDAYISDETDGAMLAEVHAR 125 N +R L++ +PA+ V+E + A Y S E A Sbjct: 62 NRLRVLEMRTLMDTNPAEVRESVKEGVERIAATRKLWADYAKLVSSPEEQRLYDQSKEAM 121 Query: 126 IAGF-EEVRNRLLVESGRSLVHDSHTALGLEFRTAIDSVQASFARHRSYNVALGEASALS 184 F E + L++ G + ++ L + R A ++V+A + NVA + +A Sbjct: 122 ETMFAEHEKMGALIQQGN--MAEARAVLDGDARKAYNTVRALSDKLSDLNVAGSDKAAAD 179 Query: 185 AREIISHALESVAVVAGAVLLTLIAAGWLLTRTLLHQMGGEPGEVVTVMQRLSDGDLLQQ 244 A +HA + + +A +L+TR+L+ Q+GGEP V + +S+GDL Q Sbjct: 180 AASTYAHARTLTISILATCAVLALALAFLITRSLVKQLGGEPAYVAEIANAVSNGDLTLQ 239 Query: 245 IRLKPGCADSMMHAIRKMVERLGRVVAEVRGNAEGMAESAAEVSATAQLLATAATEQASG 304 I + G S++ A++ MV++L RVV +V AE +A ++ EVSATAQ L+ AA+EQA+G Sbjct: 240 ISTRQGDTTSVLAAMKNMVDKLSRVVTDVNSGAEALAGASEEVSATAQSLSQAASEQAAG 299 Query: 305 VAQTSTALSQIHAAILTTADNARLTDQIASAAAVEAHQCAQTVGEMVAAIQVIAGKIAII 364 V +TS +L Q+ A+I +NA+LTD +A+ AA EA + + V V A++ IA KI II Sbjct: 300 VEETSASLEQMTASISQNTENAKLTDSMATKAASEATEGGEAVKATVVAMKQIAQKINII 359 Query: 365 DDIAYQTNLLALNATIEAAHAGQHGAGFAVVAGEVRRLAERSQAAAEEIDQVARDHTVLA 424 DDIAYQTNLLALNA IEAA AG+HG GFAVVA EVR+LAERSQ AA+EI VA LA Sbjct: 360 DDIAYQTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERSQVAAQEIGDVASSSVELA 419 Query: 425 SRVERQLGDMVPTIARTSALVQEIVQSSEQQSAAVSQISAAASQLAQIVQQNSISSEELA 484 R LG+MVP+I +TS LVQEI +SE+QS+ V QI+AA QL+Q QQN+ SSEELA Sbjct: 420 ERAGTLLGEMVPSIRKTSDLVQEITAASEEQSSGVGQINAAVGQLSQTTQQNASSSEELA 479 Query: 485 VTSEELNRRATTLRSSVGFFQ 505 T+EE++ +A L+ ++GFF+ Sbjct: 480 ATAEEMSSQAEQLQQAMGFFK 500 >ref|YP_004382315.1| chemotaxis sensory transducer [Pseudomonas mendocina NK-01] gb|AEB60563.1| chemotaxis sensory transducer [Pseudomonas mendocina NK-01] Length = 547 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 156/333 (46%), Positives = 226/333 (67%) Query: 173 YNVALGEASALSAREIISHALESVAVVAGAVLLTLIAAGWLLTRTLLHQMGGEPGEVVTV 232 + L E S + + + + ++ G L + WL+T +LL Q+GGEPG V Sbjct: 166 FQAELMEQSQNESTALFEESRMQLMIIGGVAALISVLLAWLITHSLLRQLGGEPGYAAEV 225 Query: 233 MQRLSDGDLLQQIRLKPGCADSMMHAIRKMVERLGRVVAEVRGNAEGMAESAAEVSATAQ 292 + R+++GDL ++ + G SM+ AI+ M +RL ++++EVR +A+ + ++ E+SATAQ Sbjct: 226 VTRIAEGDLRVEVTTRNGDTTSMLAAIKSMSQRLSQIISEVRSSADALTSASEEISATAQ 285 Query: 293 LLATAATEQASGVAQTSTALSQIHAAILTTADNARLTDQIASAAAVEAHQCAQTVGEMVA 352 ++ AA+EQA+ V +TS ++ Q+ A+I +NAR+TD +AS A+ EA + Q V E V Sbjct: 286 SMSQAASEQAASVEETSASMEQMSASISQNTENARITDGMASKASGEAGEGGQAVKETVR 345 Query: 353 AIQVIAGKIAIIDDIAYQTNLLALNATIEAAHAGQHGAGFAVVAGEVRRLAERSQAAAEE 412 A++ IA KI I+DDIAYQTNLLALNA IEAA AG+HG GFAVVA EVR+LAERSQ AA+E Sbjct: 346 AMKTIADKIGIVDDIAYQTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERSQVAAQE 405 Query: 413 IDQVARDHTVLASRVERQLGDMVPTIARTSALVQEIVQSSEQQSAAVSQISAAASQLAQI 472 I +VA+ LA R L ++VP+IA+TS LVQEI +SE+QS+ V QIS A +QL +I Sbjct: 406 IGEVAKSSVQLAERAGTLLDEIVPSIAKTSDLVQEISAASEEQSSGVGQISTAMNQLNEI 465 Query: 473 VQQNSISSEELAVTSEELNRRATTLRSSVGFFQ 505 QQN+ SSEELA T+EE++ +A L+ + FF+ Sbjct: 466 TQQNASSSEELAATAEEMSGQAEQLQQLMDFFK 498