BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0909.p (517 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774520.1| methyl-accepting chemotaxis transducer trans... 656 0.0 ref|YP_003052475.1| methyl-accepting chemotaxis sensory transduc... 308 1e-81 ref|YP_004472236.1| methyl-accepting chemotaxis sensory transduc... 264 4e-68 ref|YP_564296.1| chemotaxis sensory transducer [Shewanella denit... 260 5e-67 ref|YP_004382315.1| chemotaxis sensory transducer [Pseudomonas m... 256 6e-66 >ref|YP_003774520.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62612.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 517 Score = 656 bits (1692), Expect = 0.0, Method: Composition-based stats. Identities = 431/517 (83%), Positives = 472/517 (91%) Query: 1 MSRPGLRTLTVGQRLFVLILLAMLGLVATAAVSLRQIENVFQAASYAQARTVPSVTTLDD 60 MSRPGLRTL+VGQRL VLILLA+LGLVATAAVSLRQIENV+ AA+YAQ TVPSVTTLDD Sbjct: 1 MSRPGLRTLSVGQRLSVLILLALLGLVATAAVSLRQIENVYTAANYAQVNTVPSVTTLDD 60 Query: 61 AQAAFNAIQGRIYQYLVNPDPLDRARLLKEIETQRARLNQHLKTYAEAYITDETDGLMLA 120 AQAAFNAIQGRIYQYLVNPDP DR+RL+KE++ QRAR+ +HL TYA AYITDETDG MLA Sbjct: 61 AQAAFNAIQGRIYQYLVNPDPRDRSRLIKEMDVQRARMQRHLHTYANAYITDETDGAMLA 120 Query: 121 DDQARIVAFDEVVRRLLKVSDEDRIEDSLPQAILEFRASIDAVQVTFGRHRSYNIALGDA 180 DD+A I AF+EVVRRLL V++EDR+EDSL ++LEFRA+ID VQ +F RHRSYN+ALGDA Sbjct: 121 DDRAHIAAFEEVVRRLLAVAEEDRVEDSLGLSVLEFRAAIDTVQASFARHRSYNVALGDA 180 Query: 181 SALSAREMISDALQTVSLLAGGIMLVLLGSGWLLTRTLLRQMGGEPGDVVTVMQRLSDGD 240 SAL+ARE+I AL+TV+L+AGG++L+LLG+GWLLTRTLLRQMGGEPGDVVTVMQRLSDGD Sbjct: 181 SALTAREIIGQALETVALVAGGVLLILLGAGWLLTRTLLRQMGGEPGDVVTVMQRLSDGD 240 Query: 241 LVQQISVKARYRDSMMHAIQKMMERLCLVVSEVRGNAEGLVSTAEEVSATAQSLSRASTE 300 LVQ I++K RDSMMHAIQKMM RL VV EVRGNA+GLVSTAEEVSATAQSLSRASTE Sbjct: 241 LVQTITLKPGCRDSMMHAIQKMMTRLAQVVGEVRGNADGLVSTAEEVSATAQSLSRASTE 300 Query: 301 QASGVEQTSAALEQIHASILSTSQNARLTDQIAAAAAVEARACADTVKQMVDAIQQIAGK 360 QA+GVEQTS AL QIHA + ST+QNARLTDQIAAAAA+EAR CA+TVKQMV AIQQIAGK Sbjct: 301 QANGVEQTSEALAQIHALLQSTAQNARLTDQIAAAAALEARQCAETVKQMVAAIQQIAGK 360 Query: 361 IVVIDDIAYQTNLLALNATIEAAHAGEHGSGFAVVAAEVRRLAERSQSAAQEIDEVARSN 420 I VIDDIAYQTNLLALNATIEAAHAGEHGSGFAVVAAEVRRLAERSQSAAQEIDEVAR+N Sbjct: 361 IAVIDDIAYQTNLLALNATIEAAHAGEHGSGFAVVAAEVRRLAERSQSAAQEIDEVARAN 420 Query: 421 VALACAAERQLNDMVPTIARTSALVQEIVHSSESQSAAVSQISQAASQLAQVIQQNSLSS 480 V LACAAERQL+DMVPTI RTS LVQ+IV SSE QS AVSQIS AASQLAQVIQQNSLSS Sbjct: 421 VTLACAAERQLSDMVPTITRTSVLVQDIVQSSEQQSTAVSQISTAASQLAQVIQQNSLSS 480 Query: 481 EELAVTSEELNRRAVLLQTTVSFFQCQLARGMQPRLA 517 EELAVTSEELNRRA+LLQT V FFQCQLARGMQ RLA Sbjct: 481 EELAVTSEELNRRALLLQTAVGFFQCQLARGMQARLA 517 >ref|YP_003052475.1| methyl-accepting chemotaxis sensory transducer [Methylovorus glucosetrophus SIP3-4] gb|ACT51948.1| methyl-accepting chemotaxis sensory transducer [Methylovorus glucosetrophus SIP3-4] Length = 544 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 207/499 (41%), Positives = 322/499 (64%), Gaps = 1/499 (0%) Query: 9 LTVGQRLFVLILLAMLGLVATAAVSLRQIENVFQAASYAQARTVPSVTTLDDAQAAFNAI 68 +TV +++ +L+ +A++GL+ A I VF+ +Y TVPS+ LDD +++ + Sbjct: 3 VTVAKKMILLLSIAVIGLIVLAFSGQYYINQVFEKTNYVTINTVPSIIVLDDLSKSYSDL 62 Query: 69 QGRIYQYLVNPDPLDRARLLKEIETQRARLNQHLKTYAEAYITDETDGLMLADDQARIVA 128 Q +YQ+++N D A+L K + RA++++ L Y + ITD D ++ D ++ + Sbjct: 63 QETVYQHVINTDDATMAQLDKTVLEHRAKMDEALDKYEKNNITDAKDASLIKDIRSALKE 122 Query: 129 FDEVVRRLLKVSDEDRIEDSLPQAILEFRASIDAVQVTFGRHRSYNIALGDASALSAREM 188 +D V +LL +S ++IE++ + + V R YN+ +G+ ++ A + Sbjct: 123 YDPVREQLLSLSRANKIEEA-RKYTFASKDVFAKVHEMINADRQYNVEIGNNASAEAVAI 181 Query: 189 ISDALQTVSLLAGGIMLVLLGSGWLLTRTLLRQMGGEPGDVVTVMQRLSDGDLVQQISVK 248 A+ ++ +++V+ G L+TR LL+Q+GGEP V R++ GDL Q+ K Sbjct: 182 QRTAVLNSMIITVVVLIVVAIIGVLITRDLLKQLGGEPNYAAEVATRVASGDLSMQVETK 241 Query: 249 ARYRDSMMHAIQKMMERLCLVVSEVRGNAEGLVSTAEEVSATAQSLSRASTEQASGVEQT 308 SM+ A++ M+E+L +VSEVR A+G+ S +E+VS+TAQSLS+A+ EQA+ VEQT Sbjct: 242 PGDTTSMLAAMKAMVEKLSGIVSEVRSAADGIASASEQVSSTAQSLSQATNEQAASVEQT 301 Query: 309 SAALEQIHASILSTSQNARLTDQIAAAAAVEARACADTVKQMVDAIQQIAGKIVVIDDIA 368 SA++E++ ASI ++NA++T+ I+A A+ +A V Q V+A++ IA KI +IDDIA Sbjct: 302 SASVEEMSASINQNTENAKVTEGISAKASTDANEGGAAVVQTVEAMKSIANKISIIDDIA 361 Query: 369 YQTNLLALNATIEAAHAGEHGSGFAVVAAEVRRLAERSQSAAQEIDEVARSNVALACAAE 428 YQTNLLALNA IEAA AGEHG GFAVVAAEVR+LAERSQ AAQEI E+A ++V A A Sbjct: 362 YQTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERSQVAAQEIGELASNSVGTAEKAG 421 Query: 429 RQLNDMVPTIARTSALVQEIVHSSESQSAAVSQISQAASQLAQVIQQNSLSSEELAVTSE 488 + L +MVP I +TS LVQEI +S+ QS+ +QI+ A +Q++Q+ QQN+ SSEELA T+E Sbjct: 422 KLLEEMVPNINKTSDLVQEITAASQEQSSGAAQINVAMNQMSQITQQNASSSEELAATAE 481 Query: 489 ELNRRAVLLQTTVSFFQCQ 507 E++ +A LQ ++FF + Sbjct: 482 EMSGQAEQLQQLIAFFNIK 500 >ref|YP_004472236.1| methyl-accepting chemotaxis sensory transducer [Pseudomonas fulva 12-X] gb|AEF20142.1| methyl-accepting chemotaxis sensory transducer [Pseudomonas fulva 12-X] Length = 547 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 169/333 (50%), Positives = 240/333 (72%) Query: 173 YNIALGDASALSAREMISDALQTVSLLAGGIMLVLLGSGWLLTRTLLRQMGGEPGDVVTV 232 Y L D A A ++ ++ +SL+ G + + + GWL+TR+LL+Q+GGEP V Sbjct: 166 YQSDLMDQDADGATQLYEESRLQLSLIGGVAIFISILLGWLITRSLLKQLGGEPAYAAEV 225 Query: 233 MQRLSDGDLVQQISVKARYRDSMMHAIQKMMERLCLVVSEVRGNAEGLVSTAEEVSATAQ 292 + R+++GDL Q+ VK SM+ +I M RL +++EVR +A+ L S +EE+S+TAQ Sbjct: 226 VTRIAEGDLRTQVMVKPNDTTSMLASISNMSARLTQIIAEVRSSADSLSSASEEISSTAQ 285 Query: 293 SLSRASTEQASGVEQTSAALEQIHASILSTSQNARLTDQIAAAAAVEARACADTVKQMVD 352 S+S+A++EQA+ VE+TSA++EQ+ ASI ++NAR+TD +A+ A+ EA VK V Sbjct: 286 SMSQAASEQAASVEETSASMEQMSASISQNTENARVTDGMASKASNEASEGGQAVKDTVR 345 Query: 353 AIQQIAGKIVVIDDIAYQTNLLALNATIEAAHAGEHGSGFAVVAAEVRRLAERSQSAAQE 412 A++ IA KI ++DDIAYQTNLLALNA IEAA AGEHG GFAVVAAEVR+LAERSQ AAQE Sbjct: 346 AMKTIADKIGIVDDIAYQTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERSQVAAQE 405 Query: 413 IDEVARSNVALACAAERQLNDMVPTIARTSALVQEIVHSSESQSAAVSQISQAASQLAQV 472 I EVA+++VALA A L+++VP+IA+TS LVQEI +S+ QS+ V QIS A +QL+++ Sbjct: 406 IGEVAKNSVALAERAGTLLDEIVPSIAKTSDLVQEIAAASDEQSSGVGQISTAMNQLSEL 465 Query: 473 IQQNSLSSEELAVTSEELNRRAVLLQTTVSFFQ 505 QQN+ +SEELA T+EE++ +A LQ + FF+ Sbjct: 466 TQQNASASEELAATAEEMSGQAEQLQQLMDFFR 498 >ref|YP_564296.1| chemotaxis sensory transducer [Shewanella denitrificans OS217] gb|ABE56573.1| chemotaxis sensory transducer [Shewanella denitrificans OS217] Length = 543 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 178/435 (40%), Positives = 275/435 (63%), Gaps = 7/435 (1%) Query: 74 QYLVNPDPLDRARLLKEIETQRARLNQHLKTYAEAYITDETDGLMLADDQARIV---AFD 130 + L+N DP D+ RL + + R ++Q + E + +AR+ F Sbjct: 70 ELLLNDDPADQKRLHDLLASNRTGIDQKTAELESMIKSAEGKTKLAHLKEARVTFQGEFS 129 Query: 131 EVVRRLLKVSDEDRIEDSLPQAILEFRASIDAVQVTFGRHRSYNIALGDASALSAREMIS 190 ++ L + E I L A+ + + + ++ ++ + SA +R Sbjct: 130 QINALLAQGQKEAAITSMLDNAMPKLNDYLSSANDLI----AFQGSILEGSAELSRLSYE 185 Query: 191 DALQTVSLLAGGIMLVLLGSGWLLTRTLLRQMGGEPGDVVTVMQRLSDGDLVQQISVKAR 250 D + +S+ +V +G +L+T+++ RQ+GGEP V V+ R+++GDL ++ VK+ Sbjct: 186 DGVMAMSITGVLAFIVAIGGAFLVTKSITRQLGGEPSYVTDVVSRIANGDLQIKVDVKSN 245 Query: 251 YRDSMMHAIQKMMERLCLVVSEVRGNAEGLVSTAEEVSATAQSLSRASTEQASGVEQTSA 310 SM+ A+ M+ +L ++S +R +A+ L S +EEVSATAQS+S+ ++EQA+ VE+TSA Sbjct: 246 DTSSMLFAVNAMVNKLSEIISSIRTSADNLSSASEEVSATAQSMSQGASEQAASVEETSA 305 Query: 311 ALEQIHASILSTSQNARLTDQIAAAAAVEARACADTVKQMVDAIQQIAGKIVVIDDIAYQ 370 ++EQ+ ASI ++NA++TD +++ AA EA V+Q V A++ IA KI +IDDIAYQ Sbjct: 306 SIEQMSASISQNTENAKVTDGMSSKAAKEADEGGKAVQQTVAAMKSIADKISIIDDIAYQ 365 Query: 371 TNLLALNATIEAAHAGEHGSGFAVVAAEVRRLAERSQSAAQEIDEVARSNVALACAAERQ 430 TNLLALNA IEAA AGEHG GFAVVAAEVR+LAERSQ AAQEI VA ++V LA A + Sbjct: 366 TNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERSQVAAQEIGGVASNSVGLAEKAGKL 425 Query: 431 LNDMVPTIARTSALVQEIVHSSESQSAAVSQISQAASQLAQVIQQNSLSSEELAVTSEEL 490 L+++VP+I +T+ LVQEI +SE QS+ +QI+ A QL+Q+ QQ++ +SEELA T+EE+ Sbjct: 426 LDEIVPSIKKTADLVQEISAASEEQSSGAAQINTAMEQLSQITQQSASASEELAATAEEM 485 Query: 491 NRRAVLLQTTVSFFQ 505 + +A LLQ +SFF+ Sbjct: 486 SSQAELLQDVISFFK 500 >ref|YP_004382315.1| chemotaxis sensory transducer [Pseudomonas mendocina NK-01] gb|AEB60563.1| chemotaxis sensory transducer [Pseudomonas mendocina NK-01] Length = 547 Score = 256 bits (655), Expect = 6e-66, Method: Composition-based stats. Identities = 167/333 (50%), Positives = 238/333 (71%) Query: 173 YNIALGDASALSAREMISDALQTVSLLAGGIMLVLLGSGWLLTRTLLRQMGGEPGDVVTV 232 + L + S + + ++ + ++ G L+ + WL+T +LLRQ+GGEPG V Sbjct: 166 FQAELMEQSQNESTALFEESRMQLMIIGGVAALISVLLAWLITHSLLRQLGGEPGYAAEV 225 Query: 233 MQRLSDGDLVQQISVKARYRDSMMHAIQKMMERLCLVVSEVRGNAEGLVSTAEEVSATAQ 292 + R+++GDL +++ + SM+ AI+ M +RL ++SEVR +A+ L S +EE+SATAQ Sbjct: 226 VTRIAEGDLRVEVTTRNGDTTSMLAAIKSMSQRLSQIISEVRSSADALTSASEEISATAQ 285 Query: 293 SLSRASTEQASGVEQTSAALEQIHASILSTSQNARLTDQIAAAAAVEARACADTVKQMVD 352 S+S+A++EQA+ VE+TSA++EQ+ ASI ++NAR+TD +A+ A+ EA VK+ V Sbjct: 286 SMSQAASEQAASVEETSASMEQMSASISQNTENARITDGMASKASGEAGEGGQAVKETVR 345 Query: 353 AIQQIAGKIVVIDDIAYQTNLLALNATIEAAHAGEHGSGFAVVAAEVRRLAERSQSAAQE 412 A++ IA KI ++DDIAYQTNLLALNA IEAA AGEHG GFAVVAAEVR+LAERSQ AAQE Sbjct: 346 AMKTIADKIGIVDDIAYQTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERSQVAAQE 405 Query: 413 IDEVARSNVALACAAERQLNDMVPTIARTSALVQEIVHSSESQSAAVSQISQAASQLAQV 472 I EVA+S+V LA A L+++VP+IA+TS LVQEI +SE QS+ V QIS A +QL ++ Sbjct: 406 IGEVAKSSVQLAERAGTLLDEIVPSIAKTSDLVQEISAASEEQSSGVGQISTAMNQLNEI 465 Query: 473 IQQNSLSSEELAVTSEELNRRAVLLQTTVSFFQ 505 QQN+ SSEELA T+EE++ +A LQ + FF+ Sbjct: 466 TQQNASSSEELAATAEEMSGQAEQLQQLMDFFK 498