BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0907.p         (173 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774519.1| L-idonate 5-dehydrogenase [Herbaspirillum se...   259   1e-67
ref|NP_522509.1| putative L-idonate 5-dehydrogenase oxidoreducta...   198   2e-49
emb|CBJ40605.1| putative sorbitol dehydrogenase [Ralstonia solan...   197   5e-49
ref|YP_003749613.1| sorbitol dehydrogenase [Ralstonia solanacear...   197   7e-49
emb|CCA87892.1| putative sorbitol dehydrogenase [Ralstonia syzyg...   196   9e-49

>ref|YP_003774519.1| L-idonate 5-dehydrogenase [Herbaspirillum seropedicae SmR1]
 gb|ADJ62611.1| L-idonate 5-dehydrogenase protein [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score =  259 bits (661), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 117/128 (91%), Positives = 124/128 (96%)

Query: 1   MQQGLVIHAPHDLRIQSLESAPLQPQQLKVKVKAGGICGSDLHYYHHGGFGVVRIKEPMV 60
           MQQGLVIHAPHDLRIQ+L++  LQPQQLKVKVKAGGICGSDLHYYHHGGFGVVRIKEPMV
Sbjct: 1   MQQGLVIHAPHDLRIQALDTGALQPQQLKVKVKAGGICGSDLHYYHHGGFGVVRIKEPMV 60

Query: 61  LGHEVSGQIAEVGSAITDIAPGTRIAISPSRPCGVCKYCQEGKQNHCLDMRFYGSAMRTP 120
           LGHEVSGQIAEVG+A+TDIAPGTRIAISPSRPCG CKYCQEGKQNHCLDMRFYGSAMRTP
Sbjct: 61  LGHEVSGQIAEVGTAVTDIAPGTRIAISPSRPCGACKYCQEGKQNHCLDMRFYGSAMRTP 120

Query: 121 HVQGSVRK 128
           HVQG+ R+
Sbjct: 121 HVQGAFRQ 128


>ref|NP_522509.1| putative L-idonate 5-dehydrogenase oxidoreductase protein
           [Ralstonia solanacearum GMI1000]
 emb|CAD18099.1| putative l-idonate 5-dehydrogenase oxidoreductase protein
           [Ralstonia solanacearum GMI1000]
          Length = 344

 Score =  198 bits (504), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 84/125 (67%), Positives = 105/125 (84%)

Query: 4   GLVIHAPHDLRIQSLESAPLQPQQLKVKVKAGGICGSDLHYYHHGGFGVVRIKEPMVLGH 63
            LVIHA +DLRI+ +++  +QP QL+V+V+ GGICGSDLHYY+HGGFG VR+KEPMVLGH
Sbjct: 3   ALVIHAANDLRIEDIDTPEVQPDQLRVQVRFGGICGSDLHYYNHGGFGTVRVKEPMVLGH 62

Query: 64  EVSGQIAEVGSAITDIAPGTRIAISPSRPCGVCKYCQEGKQNHCLDMRFYGSAMRTPHVQ 123
           EV+G++ E+G  +   A G R+AISPSRPCG C YCQ+G QNHCLDMR+YGSAMRTPHVQ
Sbjct: 63  EVAGRVEEIGPGVHRHAKGDRVAISPSRPCGQCHYCQQGLQNHCLDMRYYGSAMRTPHVQ 122

Query: 124 GSVRK 128
           G+ R+
Sbjct: 123 GAFRR 127


>emb|CBJ40605.1| putative sorbitol dehydrogenase [Ralstonia solanacearum CMR15]
          Length = 344

 Score =  197 bits (501), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 84/125 (67%), Positives = 104/125 (83%)

Query: 4   GLVIHAPHDLRIQSLESAPLQPQQLKVKVKAGGICGSDLHYYHHGGFGVVRIKEPMVLGH 63
            LVIHA +DLRI+ +++  +QP QL+V+V+ GGICGSDLHYY+HGGFG VR+KEPMVLGH
Sbjct: 3   ALVIHAANDLRIEDIDTPEVQPNQLRVQVRFGGICGSDLHYYNHGGFGTVRVKEPMVLGH 62

Query: 64  EVSGQIAEVGSAITDIAPGTRIAISPSRPCGVCKYCQEGKQNHCLDMRFYGSAMRTPHVQ 123
           EV+G++ E G  +   A G R+AISPSRPCG C YCQ+G QNHCLDMR+YGSAMRTPHVQ
Sbjct: 63  EVAGRVEETGPGVHRHAKGDRVAISPSRPCGQCHYCQQGLQNHCLDMRYYGSAMRTPHVQ 122

Query: 124 GSVRK 128
           G+ R+
Sbjct: 123 GAFRR 127


>ref|YP_003749613.1| sorbitol dehydrogenase [Ralstonia solanacearum PSI07]
 emb|CBJ34974.1| putative sorbitol dehydrogenase [Ralstonia solanacearum PSI07]
          Length = 344

 Score =  197 bits (500), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 84/125 (67%), Positives = 104/125 (83%)

Query: 4   GLVIHAPHDLRIQSLESAPLQPQQLKVKVKAGGICGSDLHYYHHGGFGVVRIKEPMVLGH 63
            LVIHA +DLRI+ + +  +QP Q++V+V+ GGICGSDLHYY+HGGFG VR+KEPMVLGH
Sbjct: 3   ALVIHAANDLRIEDIATPEVQPHQMRVQVRFGGICGSDLHYYNHGGFGTVRVKEPMVLGH 62

Query: 64  EVSGQIAEVGSAITDIAPGTRIAISPSRPCGVCKYCQEGKQNHCLDMRFYGSAMRTPHVQ 123
           EV+G++ EVG  +   A G R+AISPSRPCG C YCQ+G QNHCLDMR+YGSAMRTPHVQ
Sbjct: 63  EVAGRVEEVGQGVHQHAKGDRVAISPSRPCGQCHYCQQGLQNHCLDMRYYGSAMRTPHVQ 122

Query: 124 GSVRK 128
           G+ R+
Sbjct: 123 GAFRR 127


>emb|CCA87892.1| putative sorbitol dehydrogenase [Ralstonia syzygii R24]
          Length = 344

 Score =  196 bits (499), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 83/125 (66%), Positives = 104/125 (83%)

Query: 4   GLVIHAPHDLRIQSLESAPLQPQQLKVKVKAGGICGSDLHYYHHGGFGVVRIKEPMVLGH 63
            LVIHA +DLRI+ + +  +QP Q++V+V+ GGICGSDLHYY+HGGFG VR+KEPMVLGH
Sbjct: 3   ALVIHAANDLRIEDIATPEVQPNQMRVQVRFGGICGSDLHYYNHGGFGTVRVKEPMVLGH 62

Query: 64  EVSGQIAEVGSAITDIAPGTRIAISPSRPCGVCKYCQEGKQNHCLDMRFYGSAMRTPHVQ 123
           EV+G++ E+G  +   A G R+AISPSRPCG C YCQ+G QNHCLDMR+YGSAMRTPHVQ
Sbjct: 63  EVAGRVEEIGQGVHQHAKGDRVAISPSRPCGQCHYCQQGLQNHCLDMRYYGSAMRTPHVQ 122

Query: 124 GSVRK 128
           G+ R+
Sbjct: 123 GAFRR 127