BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0905.p         (517 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774517.1| gluconokinase [Herbaspirillum seropedicae Sm...   885   0.0  
ref|YP_004755066.1| gluconokinase [Collimonas fungivorans Ter331...   717   0.0  
ref|YP_004157169.1| gluconate kinase [Variovorax paradoxus EPS] ...   681   0.0  
ref|YP_002947972.1| gluconate kinase [Variovorax paradoxus S110]...   679   0.0  
ref|ZP_02327858.1| gluconate kinase (2-dehydro-3-deoxygluconokin...   649   0.0  

>ref|YP_003774517.1| gluconokinase [Herbaspirillum seropedicae SmR1]
 gb|ADJ62609.1| gluconokinase protein [Herbaspirillum seropedicae SmR1]
          Length = 520

 Score =  885 bits (2287), Expect = 0.0,   Method: Composition-based stats.
 Identities = 473/516 (91%), Positives = 491/516 (95%)

Query: 2   SSSAPYMLGVDIGTTSTKTVVFTLDGKVVAQHAEEYPVLCTEPGMAEQDPEQIVAAALAS 61
           S+ A YMLGVDIGTTSTK+VVFTLDGKVVAQHAEEYPVLCTEPGMAEQDPEQIVAAALAS
Sbjct: 4   SALARYMLGVDIGTTSTKSVVFTLDGKVVAQHAEEYPVLCTEPGMAEQDPEQIVAAALAS 63

Query: 62  IAGAVKAAKAAPQEIALLSFSAAMHSVIALDADNRLLSNSITWGDIRASVWAERIKHEHD 121
           IAGAVKAAKAAPQEIALLSFSAAMHSVIALDA+NRLLSNSITWGDIRASVWAERIKHEHD
Sbjct: 64  IAGAVKAAKAAPQEIALLSFSAAMHSVIALDAENRLLSNSITWGDIRASVWAERIKHEHD 123

Query: 122 GNAIYRRTGTPIHPMSPLCKLMWMRHEKPEVFHQAARFVGIKEYLLYQLFGQWVVDHSIA 181
           GNAIYRRTGTP+HPMSPLCKLMWMRHEKP+VFH+AARFVGIKEYLLYQLFGQWVVDHSIA
Sbjct: 124 GNAIYRRTGTPVHPMSPLCKLMWMRHEKPDVFHRAARFVGIKEYLLYQLFGQWVVDHSIA 183

Query: 182 SATGMFNLAQLAWDQGALALLQVDARQLPKPVPTTHQLQGLDAAVAEQLGLRTDTPFVIG 241
           SATGMFNL +LAWDQGALALL V   QLP PVPTTH+L  L + +A++LGL  DTPF+IG
Sbjct: 184 SATGMFNLRELAWDQGALALLGVRPDQLPTPVPTTHRLPALSSEMAQRLGLSVDTPFIIG 243

Query: 242 ANDGVLSNLGVNAIHPGQVAVTIGTSGAMRTVVERPVTDASGRTFCYALTERHWVVGGPV 301
           ANDGVLSNLGVNAI  G VAVTIGTSGAMRTV++ P TD  GR FCYALTE+HWVVGGPV
Sbjct: 244 ANDGVLSNLGVNAIEIGHVAVTIGTSGAMRTVIDEPRTDPQGRLFCYALTEKHWVVGGPV 303

Query: 302 NNGGNIFRWVRDELATAEAAAAREEGVDPYEALTRIAEKVRPGAEGLLFHPFMAGERAPL 361
           NNGGNIFRWVRDELATAEAAAAREEGVDPYEALTRIAEKVRPGAEGLLFHPFMAGERAPL
Sbjct: 304 NNGGNIFRWVRDELATAEAAAAREEGVDPYEALTRIAEKVRPGAEGLLFHPFMAGERAPL 363

Query: 362 WNADLRGSFFGLALHHGKHHMIRAALEGVIFNLYSILPALEELVGPTKRMMATGGFARSA 421
           WNADLRGSFFGLALHHGKHHMIRAALEGVIFNLYSILPALEELVGPTKRMMATGGFARSA
Sbjct: 364 WNADLRGSFFGLALHHGKHHMIRAALEGVIFNLYSILPALEELVGPTKRMMATGGFARSA 423

Query: 422 LWRQMMADIFNREVVVPESVESSCLGAAVLGAWALGLLPSLSVISGMVGSTNHHAPEAEA 481
           LWRQMMADIFNREVVVPESVESSCLGAAVLGAWALGL+PSLSVISGMVGSTNHHAPEAEA
Sbjct: 424 LWRQMMADIFNREVVVPESVESSCLGAAVLGAWALGLVPSLSVISGMVGSTNHHAPEAEA 483

Query: 482 VAVYGRLQPIFAAIPAKLEAEYHAIAAFQRATGKQH 517
           VAVYGRLQPIFAAIPAKLEAEYHAIAAFQR  G+ H
Sbjct: 484 VAVYGRLQPIFAAIPAKLEAEYHAIAAFQREAGRPH 519


>ref|YP_004755066.1| gluconokinase [Collimonas fungivorans Ter331]
 gb|AEK64243.1| Gluconokinase [Collimonas fungivorans Ter331]
          Length = 522

 Score =  717 bits (1852), Expect = 0.0,   Method: Composition-based stats.
 Identities = 371/518 (71%), Positives = 422/518 (81%), Gaps = 4/518 (0%)

Query: 1   MSSSAPYMLGVDIGTTSTKTVVFTLDGKVVAQHAEEYPVLCTEPGMAEQDPEQIVAAALA 60
           M     YMLGVDIGTTSTK V+FT  G+VVAQHA EYP+LCT PGMAEQDP QI  A L+
Sbjct: 1   MQHQPEYMLGVDIGTTSTKAVLFTTQGQVVAQHAVEYPLLCTTPGMAEQDPLQIYDAVLS 60

Query: 61  SIAGAVKAAKAA----PQEIALLSFSAAMHSVIALDADNRLLSNSITWGDIRASVWAERI 116
           +I  AV  A         +I L+SFSAAMHSVIA+  D  LLSNSITWGD RA  WA RI
Sbjct: 61  AIKNAVGNAAGKNGVEAAQIKLVSFSAAMHSVIAVGQDGALLSNSITWGDNRAGAWANRI 120

Query: 117 KHEHDGNAIYRRTGTPIHPMSPLCKLMWMRHEKPEVFHQAARFVGIKEYLLYQLFGQWVV 176
           + E  G+ IY RTGTPIHPMSPLCK+MW+RH++P++F + ARFVG+KEY+LY+LFG W+V
Sbjct: 121 RDELGGHEIYLRTGTPIHPMSPLCKIMWLRHDQPQLFARTARFVGVKEYVLYRLFGDWLV 180

Query: 177 DHSIASATGMFNLAQLAWDQGALALLQVDARQLPKPVPTTHQLQGLDAAVAEQLGLRTDT 236
           DHSIASATGMFNL QL WDQGAL LL +  + L   VPTTH L GL  A+A+QLGL   T
Sbjct: 181 DHSIASATGMFNLQQLDWDQGALELLGIGPQHLSTLVPTTHHLSGLAPAMAQQLGLAPAT 240

Query: 237 PFVIGANDGVLSNLGVNAIHPGQVAVTIGTSGAMRTVVERPVTDASGRTFCYALTERHWV 296
           PFVIGANDGVLSNLGVNAI PGQVAVTIGTSGAMRTV+++P+TD SGRTFCYALT +HWV
Sbjct: 241 PFVIGANDGVLSNLGVNAIGPGQVAVTIGTSGAMRTVIDKPLTDPSGRTFCYALTAKHWV 300

Query: 297 VGGPVNNGGNIFRWVRDELATAEAAAAREEGVDPYEALTRIAEKVRPGAEGLLFHPFMAG 356
           VGGP NNGG+IF WVRDELATAEAAAA+  G+DPY+ALT IAE V  GAEGLLFHP++AG
Sbjct: 301 VGGPTNNGGSIFHWVRDELATAEAAAAKAAGLDPYDALTNIAEGVSAGAEGLLFHPYLAG 360

Query: 357 ERAPLWNADLRGSFFGLALHHGKHHMIRAALEGVIFNLYSILPALEELVGPTKRMMATGG 416
           ERAPLWNAD RGS+FGLA HHGK HMIRAALEGVIF+LYSILPA+E+L+GPT  MMATGG
Sbjct: 361 ERAPLWNADARGSYFGLATHHGKPHMIRAALEGVIFSLYSILPAVEDLIGPTTHMMATGG 420

Query: 417 FARSALWRQMMADIFNREVVVPESVESSCLGAAVLGAWALGLLPSLSVISGMVGSTNHHA 476
           FARS+LWRQMMADIF REVVVPESVESSCLGAAVLG +ALG + SL VI GMVGST+ H 
Sbjct: 421 FARSSLWRQMMADIFEREVVVPESVESSCLGAAVLGLYALGKVDSLDVIGGMVGSTHRHV 480

Query: 477 PEAEAVAVYGRLQPIFAAIPAKLEAEYHAIAAFQRATG 514
           P AE VA+Y RL PI+AAIP +LE +Y  ++ FQR T 
Sbjct: 481 PIAENVALYRRLWPIYAAIPKQLEQQYRLLSQFQRETA 518


>ref|YP_004157169.1| gluconate kinase [Variovorax paradoxus EPS]
 gb|ADU39058.1| gluconate kinase [Variovorax paradoxus EPS]
          Length = 519

 Score =  681 bits (1758), Expect = 0.0,   Method: Composition-based stats.
 Identities = 343/507 (67%), Positives = 408/507 (80%)

Query: 8   MLGVDIGTTSTKTVVFTLDGKVVAQHAEEYPVLCTEPGMAEQDPEQIVAAALASIAGAVK 67
           ++GVDIGTTSTK V FT  G+V+A HA +YP+L  E G AEQDPEQI  A LA+IAG V+
Sbjct: 5   VIGVDIGTTSTKAVAFTPAGRVLAHHAVDYPLLQPEAGAAEQDPEQIFQAVLAAIAGCVQ 64

Query: 68  AAKAAPQEIALLSFSAAMHSVIALDADNRLLSNSITWGDIRASVWAERIKHEHDGNAIYR 127
            +KAAP ++  +SFSAAMHS+I +D     L+ SITW D RA+ WAERI+ E DG AIYR
Sbjct: 65  ESKAAPADVLAVSFSAAMHSLILVDGAGAPLTASITWADQRAARWAERIRDEWDGLAIYR 124

Query: 128 RTGTPIHPMSPLCKLMWMRHEKPEVFHQAARFVGIKEYLLYQLFGQWVVDHSIASATGMF 187
           RTGTPIHPMSPL KL+W+RHE+PE+F  AARFVGIKEY+ ++LFGQW VDHSIASATG+F
Sbjct: 125 RTGTPIHPMSPLVKLVWLRHERPELFASAARFVGIKEYVFFRLFGQWQVDHSIASATGLF 184

Query: 188 NLAQLAWDQGALALLQVDARQLPKPVPTTHQLQGLDAAVAEQLGLRTDTPFVIGANDGVL 247
           N+ +L WD+GALAL  V A QL +PVPTT  ++GL A VA QLGL TDTPFVIGANDGVL
Sbjct: 185 NIERLDWDEGALALAGVRADQLSRPVPTTWHIEGLAADVAAQLGLATDTPFVIGANDGVL 244

Query: 248 SNLGVNAIHPGQVAVTIGTSGAMRTVVERPVTDASGRTFCYALTERHWVVGGPVNNGGNI 307
           SNLGVNA+ PG+VAVTIGTSGAMRTVV+ P+TD  GRTFCYAL ER WVVGGPVNNGG I
Sbjct: 245 SNLGVNAVAPGEVAVTIGTSGAMRTVVDHPMTDPEGRTFCYALAERRWVVGGPVNNGGII 304

Query: 308 FRWVRDELATAEAAAAREEGVDPYEALTRIAEKVRPGAEGLLFHPFMAGERAPLWNADLR 367
            RWVRDE A+AEA  A+  G+D YE LTRIAE+V  G+EGL+FHPF+ GERAP WNADLR
Sbjct: 305 LRWVRDEFASAEAETAKRLGIDTYEVLTRIAERVSAGSEGLVFHPFLTGERAPYWNADLR 364

Query: 368 GSFFGLALHHGKHHMIRAALEGVIFNLYSILPALEELVGPTKRMMATGGFARSALWRQMM 427
           GSFFGL +HH K HMIRA LEGVIFNLYSILPA+E + G +  + ATGGFARS +WRQMM
Sbjct: 365 GSFFGLGIHHRKEHMIRAVLEGVIFNLYSILPAVESIAGRSAHIKATGGFARSGMWRQMM 424

Query: 428 ADIFNREVVVPESVESSCLGAAVLGAWALGLLPSLSVISGMVGSTNHHAPEAEAVAVYGR 487
           AD+F+REVVVPES ESSCLGAAVLG +ALG + SL V++GMVG+T+ H P A+  A+Y +
Sbjct: 425 ADVFDREVVVPESFESSCLGAAVLGLYALGHVDSLDVVAGMVGATHRHTPNAKNAALYRQ 484

Query: 488 LQPIFAAIPAKLEAEYHAIAAFQRATG 514
           L P++ ++P KL  EY  +AAFQ+ T 
Sbjct: 485 LLPVYLSLPRKLGEEYRLLAAFQQQTA 511


>ref|YP_002947972.1| gluconate kinase [Variovorax paradoxus S110]
 gb|ACS22706.1| gluconate kinase [Variovorax paradoxus S110]
          Length = 519

 Score =  679 bits (1752), Expect = 0.0,   Method: Composition-based stats.
 Identities = 344/507 (67%), Positives = 407/507 (80%)

Query: 8   MLGVDIGTTSTKTVVFTLDGKVVAQHAEEYPVLCTEPGMAEQDPEQIVAAALASIAGAVK 67
           ++GVDIGTTSTK V FT  G+V+A  A EYP+L  E   AEQDPEQI  A LA+IAG VK
Sbjct: 5   VIGVDIGTTSTKAVAFTPAGRVLAHDAVEYPLLQPEAAAAEQDPEQIFQAVLAAIAGCVK 64

Query: 68  AAKAAPQEIALLSFSAAMHSVIALDADNRLLSNSITWGDIRASVWAERIKHEHDGNAIYR 127
            +KAAP ++  +SFSAAMHS+I +DA    L+ SITW D RAS WA RI+ E DG AIYR
Sbjct: 65  QSKAAPADVLAVSFSAAMHSLILVDAAGAPLTRSITWADHRASAWAVRIRDEWDGLAIYR 124

Query: 128 RTGTPIHPMSPLCKLMWMRHEKPEVFHQAARFVGIKEYLLYQLFGQWVVDHSIASATGMF 187
           RTGTPIHPMSPL KL+W+RHE+ E+F +AARFVGIKEY+ ++LFGQW VDHSIASATG+F
Sbjct: 125 RTGTPIHPMSPLAKLVWLRHERAELFARAARFVGIKEYVFFRLFGQWQVDHSIASATGLF 184

Query: 188 NLAQLAWDQGALALLQVDARQLPKPVPTTHQLQGLDAAVAEQLGLRTDTPFVIGANDGVL 247
           ++ +L WD GALAL  V A QLP+PVPTT  ++GL A  A QLGL  DTPFVIGANDGVL
Sbjct: 185 DIERLDWDAGALALAGVRAEQLPRPVPTTWHIEGLAADTAAQLGLARDTPFVIGANDGVL 244

Query: 248 SNLGVNAIHPGQVAVTIGTSGAMRTVVERPVTDASGRTFCYALTERHWVVGGPVNNGGNI 307
           SNLGVNA+ PG+VAVTIGTSGAMRTVV+ P+TD  GRTFCYAL ER WVVGGPVNNGG I
Sbjct: 245 SNLGVNAMAPGEVAVTIGTSGAMRTVVDHPMTDPEGRTFCYALAERRWVVGGPVNNGGII 304

Query: 308 FRWVRDELATAEAAAAREEGVDPYEALTRIAEKVRPGAEGLLFHPFMAGERAPLWNADLR 367
            RWVRDE A+AEA  A+  G+D YE LTRIAE+V  G+EGL+FHPF+ GERAP WNADLR
Sbjct: 305 LRWVRDEFASAEAETAKRLGIDTYEVLTRIAERVSAGSEGLVFHPFLTGERAPYWNADLR 364

Query: 368 GSFFGLALHHGKHHMIRAALEGVIFNLYSILPALEELVGPTKRMMATGGFARSALWRQMM 427
           GSFFGL +HH K HMIRA LEGVIFNL+SILPA+E + GP+ R+ ATGGFARS +WRQMM
Sbjct: 365 GSFFGLGIHHRKEHMIRAVLEGVIFNLHSILPAVESIAGPSARIKATGGFARSGMWRQMM 424

Query: 428 ADIFNREVVVPESVESSCLGAAVLGAWALGLLPSLSVISGMVGSTNHHAPEAEAVAVYGR 487
           AD+F+REVVVPES ESSCLGAAVLG +ALG + SL V++GMVG+T+ H P A+ VA+Y +
Sbjct: 425 ADVFDREVVVPESFESSCLGAAVLGLYALGHVDSLDVVAGMVGATHRHTPNAKNVALYRQ 484

Query: 488 LQPIFAAIPAKLEAEYHAIAAFQRATG 514
           L P+F ++P KL  EY  +AAFQ+ T 
Sbjct: 485 LLPVFLSLPHKLGEEYRLLAAFQQQTA 511


>ref|ZP_02327858.1| gluconate kinase (2-dehydro-3-deoxygluconokinase) [Paenibacillus
           larvae subsp. larvae BRL-230010]
          Length = 520

 Score =  649 bits (1674), Expect = 0.0,   Method: Composition-based stats.
 Identities = 302/505 (59%), Positives = 388/505 (76%)

Query: 7   YMLGVDIGTTSTKTVVFTLDGKVVAQHAEEYPVLCTEPGMAEQDPEQIVAAALASIAGAV 66
           YM+G+DIGTTSTK V+F  DGKVVA+   EYP+      +AEQDPEQI  A + S+   +
Sbjct: 6   YMIGIDIGTTSTKAVLFEEDGKVVARGNGEYPLYTPASTIAEQDPEQIFQAVIQSVRQVM 65

Query: 67  KAAKAAPQEIALLSFSAAMHSVIALDADNRLLSNSITWGDIRASVWAERIKHEHDGNAIY 126
             ++  P +I  +SFS+AMHS+IA+D   + L+  +TW D R+S +A ++K+E +G+ +Y
Sbjct: 66  TQSRILPDDILFVSFSSAMHSMIAVDTQGKPLTPCVTWADNRSSQYAGKLKYEMNGHELY 125

Query: 127 RRTGTPIHPMSPLCKLMWMRHEKPEVFHQAARFVGIKEYLLYQLFGQWVVDHSIASATGM 186
            RTGTPIHPMSP+ KLMWMRHE PE+F +  +F+ IKEY+  +LF +++VD+SIASATGM
Sbjct: 126 LRTGTPIHPMSPITKLMWMRHEAPEIFQKTYKFISIKEYVFAKLFNEYLVDYSIASATGM 185

Query: 187 FNLAQLAWDQGALALLQVDARQLPKPVPTTHQLQGLDAAVAEQLGLRTDTPFVIGANDGV 246
            NL  L WDQ AL +  + ++QL K VPTT+QL+GLD A AE++GL+  TPF++GA+DGV
Sbjct: 186 LNLNYLNWDQEALHIAGISSKQLSKLVPTTYQLEGLDPAYAEEMGLKASTPFIVGASDGV 245

Query: 247 LSNLGVNAIHPGQVAVTIGTSGAMRTVVERPVTDASGRTFCYALTERHWVVGGPVNNGGN 306
           LSNLGVNAI PG VA TIGTSGA+RTVV+ PVTD  GR FCYALT++HWV+GG VNNGG 
Sbjct: 246 LSNLGVNAIEPGVVAATIGTSGAIRTVVDHPVTDPKGRIFCYALTDKHWVIGGAVNNGGM 305

Query: 307 IFRWVRDELATAEAAAAREEGVDPYEALTRIAEKVRPGAEGLLFHPFMAGERAPLWNADL 366
           +FRWVRDE A++E   A+  GVDPY+ LT+IAE+V PGA+GL+FHP+M GERAPLWN+D 
Sbjct: 306 LFRWVRDEFASSEIETAKRLGVDPYDILTKIAEQVNPGADGLIFHPYMTGERAPLWNSDA 365

Query: 367 RGSFFGLALHHGKHHMIRAALEGVIFNLYSILPALEELVGPTKRMMATGGFARSALWRQM 426
           RGSFFGL +HH K HMIRA LEGVIFN+Y++L A+EE +G   ++ ATGGFARS LWRQM
Sbjct: 366 RGSFFGLTMHHRKEHMIRAVLEGVIFNMYTVLLAMEEQIGRPSKIHATGGFARSVLWRQM 425

Query: 427 MADIFNREVVVPESVESSCLGAAVLGAWALGLLPSLSVISGMVGSTNHHAPEAEAVAVYG 486
           MADIF++EVV+PES+ESSCLGA VLG +A G   SLSV+SGMVG T+ H P  +   +Y 
Sbjct: 426 MADIFDQEVVIPESIESSCLGAVVLGLYATGRTDSLSVVSGMVGVTHEHKPVKKNAEIYH 485

Query: 487 RLQPIFAAIPAKLEAEYHAIAAFQR 511
            L PIF +   KL+ EY AIA FQ+
Sbjct: 486 ELLPIFISFFRKLDKEYEAIAKFQQ 510