BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0902.p (352 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774515.1| GntR family transcription regulator protein ... 594 e-168 ref|YP_004755065.1| gluconate utilization system Gnt-I transcrip... 452 e-125 ref|YP_001893756.1| LacI family transcriptional regulator [Burkh... 367 1e-99 gb|EGP44576.1| LacI family regulatory protein 2 [Achromobacter x... 323 2e-86 ref|YP_004846383.1| lacI family transcriptional regulator [Pseud... 310 3e-82 >ref|YP_003774515.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62607.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 352 Score = 594 bits (1532), Expect = e-168, Method: Composition-based stats. Identities = 311/352 (88%), Positives = 331/352 (94%) Query: 1 MTQRAAPKSKPKAPPAVRGSRATGRVTIIDVAAEAGVSPMTVSRALKNPRLVQEQSRQRI 60 MTQRAA KSKPK+PPAVRGSRATGRVTIIDVAAEAGVSPMTVSRALK P LVQEQSRQRI Sbjct: 1 MTQRAASKSKPKSPPAVRGSRATGRVTIIDVAAEAGVSPMTVSRALKTPALVQEQSRQRI 60 Query: 61 LEAIDRLGYVPNQAASTLASARSQVIAVLVPSLTNAVFIETLSGIRDYLAGAGYQFLIGE 120 LEAID+LGYVPNQAA+TLASARSQV+AVLVPSLTNAVFIETLSGIRDYLA GYQFLIGE Sbjct: 61 LEAIDKLGYVPNQAAATLASARSQVVAVLVPSLTNAVFIETLSGIRDYLASVGYQFLIGE 120 Query: 121 TGYVRAKEEQLIATYLAHAPAGFLLSSSEQHDILRRQLAAANIPAVRMFDLGKSNSDMSV 180 TGY R KEE+LIATYLAHAPAGFLLSSS+QHDIL+ + A+ IPAVRMFDLG+S D SV Sbjct: 121 TGYDRHKEEELIATYLAHAPAGFLLSSSQQHDILQSRPASRAIPAVRMFDLGRSQQDYSV 180 Query: 181 GFSQTKAGYAAARHLIERGYRRPAFLAAQLDPRMMKRREGFRKGLSEAGLDPDVEVLLPE 240 GFSQT+AG+A ARHL ERGYRRPAFLAAQLDPRMMKRREGFRKGL EAGL D+EVLLP+ Sbjct: 181 GFSQTRAGHAVARHLAERGYRRPAFLAAQLDPRMMKRREGFRKGLQEAGLAADIEVLLPQ 240 Query: 241 PTTVDMGAQLLRRVLEQHPECDSVFCCNDDLALGALFECQRQGISVPREMAIAGFNDLSW 300 PTTVDMGAQLLRRVL+ HP+CDSVFCCNDDLALGALFECQRQGISVPR+MAIAGFNDLSW Sbjct: 241 PTTVDMGAQLLRRVLQDHPDCDSVFCCNDDLALGALFECQRQGISVPRQMAIAGFNDLSW 300 Query: 301 AACATPSITTVVTPRYDIGYKSAEMLVRQLKGEDIPKGRLDLGFELALREST 352 AACATPSITTVVTPRYDIGY+SAEMLVRQLKGE+I KGRLDLGFELA+REST Sbjct: 301 AACATPSITTVVTPRYDIGYQSAEMLVRQLKGEEIAKGRLDLGFELAVREST 352 >ref|YP_004755065.1| gluconate utilization system Gnt-I transcriptional repressor [Collimonas fungivorans Ter331] gb|AEK64242.1| Gluconate utilization system Gnt-I transcriptional repressor [Collimonas fungivorans Ter331] Length = 350 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 224/335 (66%), Positives = 273/335 (81%) Query: 18 RGSRATGRVTIIDVAAEAGVSPMTVSRALKNPRLVQEQSRQRILEAIDRLGYVPNQAAST 77 R SRA+GRVTI+DVA A VSPMTVSRALK P LVQ ++R RI AI +LGYVPNQAAST Sbjct: 16 RHSRASGRVTIVDVARLARVSPMTVSRALKTPALVQLEARDRIAAAIKQLGYVPNQAAST 75 Query: 78 LASARSQVIAVLVPSLTNAVFIETLSGIRDYLAGAGYQFLIGETGYVRAKEEQLIATYLA 137 LASA+SQVI V+VPSL+N+VF++TL+GIRD L GY+FLIGE+ Y KE QLI+TYLA Sbjct: 76 LASAKSQVIGVIVPSLSNSVFVDTLTGIRDSLNQHGYKFLIGESSYSPEKESQLISTYLA 135 Query: 138 HAPAGFLLSSSEQHDILRRQLAAANIPAVRMFDLGKSNSDMSVGFSQTKAGYAAARHLIE 197 HAP GFLLS EQ D LR QLA N+PAVRMFDL N +++VGFS +AGY+ ARHLIE Sbjct: 136 HAPDGFLLSGIEQQDALREQLATHNVPAVRMFDLNPENGEVTVGFSHEEAGYSIARHLIE 195 Query: 198 RGYRRPAFLAAQLDPRMMKRREGFRKGLSEAGLDPDVEVLLPEPTTVDMGAQLLRRVLEQ 257 RGYR+P FL AQLDPRMMKRR GFRK LSEAG++PD+EVL P P+TV++G ++L ++L+Q Sbjct: 196 RGYRQPGFLGAQLDPRMMKRRHGFRKALSEAGINPDIEVLTPAPSTVELGTKMLGQILQQ 255 Query: 258 HPECDSVFCCNDDLALGALFECQRQGISVPREMAIAGFNDLSWAACATPSITTVVTPRYD 317 P CD+VFCCNDDLALG LFECQR+G+SVP +MAIAGFNDL W+A A P ITT+VTPRYD Sbjct: 256 TPACDAVFCCNDDLALGVLFECQRRGLSVPGQMAIAGFNDLPWSAFANPGITTIVTPRYD 315 Query: 318 IGYKSAEMLVRQLKGEDIPKGRLDLGFELALREST 352 IG+ +A++L++ L+ E +DLGF+LA+R ST Sbjct: 316 IGFTAAQLLIKLLRHETPETTSVDLGFKLAIRSST 350 >ref|YP_001893756.1| LacI family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD14532.1| transcriptional regulator, LacI family [Burkholderia phytofirmans PsJN] Length = 364 Score = 367 bits (942), Expect = 1e-99, Method: Composition-based stats. Identities = 187/331 (56%), Positives = 251/331 (75%) Query: 21 RATGRVTIIDVAAEAGVSPMTVSRALKNPRLVQEQSRQRILEAIDRLGYVPNQAASTLAS 80 R +GR TI DVA A VS MTVSRALK+P + ++R R+ A+ LGYVPN AA TLA+ Sbjct: 33 RLSGRATIADVADLAQVSTMTVSRALKDPAQLSPEARARVEAAVTELGYVPNHAARTLAT 92 Query: 81 ARSQVIAVLVPSLTNAVFIETLSGIRDYLAGAGYQFLIGETGYVRAKEEQLIATYLAHAP 140 +RS V+AVLVPSL+N VF++TL+GI+D L AGYQ LIG TGY K+ +L++TYL+HAP Sbjct: 93 SRSHVVAVLVPSLSNTVFVDTLAGIQDCLGPAGYQILIGNTGYSSGKQAELVSTYLSHAP 152 Query: 141 AGFLLSSSEQHDILRRQLAAANIPAVRMFDLGKSNSDMSVGFSQTKAGYAAARHLIERGY 200 GFL++ + + +R++LAAA +P V M+DL ++ + SVGFSQ +AG+ ++L+ERGY Sbjct: 153 DGFLVTGIDGSEAIRQRLAAARVPVVHMYDLSRTPGEWSVGFSQQRAGFTLTKYLLERGY 212 Query: 201 RRPAFLAAQLDPRMMKRREGFRKGLSEAGLDPDVEVLLPEPTTVDMGAQLLRRVLEQHPE 260 + P F+AAQLDPR M+RR GFR+ L EAGLDPDVE+L EP++V +G++LL ++L P Sbjct: 213 QCPGFVAAQLDPRTMQRRAGFRRALREAGLDPDVEILTDEPSSVGLGSKLLAQMLSHAPA 272 Query: 261 CDSVFCCNDDLALGALFECQRQGISVPREMAIAGFNDLSWAACATPSITTVVTPRYDIGY 320 CD++FCCNDDLALGALFECQR+GISVP +AIAGFNDL +A +TPS+TTV TPRY IG+ Sbjct: 273 CDAIFCCNDDLALGALFECQRRGISVPGRIAIAGFNDLPPSAWSTPSLTTVTTPRYQIGF 332 Query: 321 KSAEMLVRQLKGEDIPKGRLDLGFELALRES 351 ++A +L++ L G + +DL F L RES Sbjct: 333 EAARLLLQILDGHPPERSCIDLRFTLTPRES 363 >gb|EGP44576.1| LacI family regulatory protein 2 [Achromobacter xylosoxidans AXX-A] Length = 350 Score = 323 bits (828), Expect = 2e-86, Method: Composition-based stats. Identities = 169/347 (48%), Positives = 235/347 (67%), Gaps = 3/347 (0%) Query: 9 SKPKAPPAVRGSRAT--GRVTIIDVAAEAGVSPMTVSRALKNPRLVQEQSRQRILEAIDR 66 ++P + ++R R+T GRVT+ +VA AGVS +TVSRAL+ P V E RQRI E Sbjct: 4 NRPVSSMSIRKPRSTRAGRVTMQEVADRAGVSAITVSRALRTPDKVAEAVRQRIAEVCRE 63 Query: 67 LGYVPNQAASTLASARSQVIAVLVPSLTNAVFIETLSGIRDYLAGAGYQFLIGETGYVRA 126 LGYVPN AAS LAS RSQ I VL+PSL+N VF++ ++GI+D L GY LIG TGY Sbjct: 64 LGYVPNHAASALASTRSQTIVVLIPSLSNVVFVDIITGIKDVLDEQGYHLLIGVTGYSPD 123 Query: 127 KEEQLIATYLAHAPAGFLLSSSEQHDILRRQLAAANIPAVRMFDLGKSNSDMSVGFSQTK 186 EE L+ YL H P G +L+ + + + L A +P V + MSVGFSQ + Sbjct: 124 AEEALLRKYLQHLPDGLILTGIDHNPGVWELLRAQAMPTVHTIETLAGGEGMSVGFSQVE 183 Query: 187 AGYAAARHLIERGYRRPAFLAAQLDPRMMKRREGFRKGLSEAGL-DPDVEVLLPEPTTVD 245 +GYAA RHL+ERG+RR + AQLDPR ++R EG R+ L +AGL DP +E++ PE +++ Sbjct: 184 SGYAAGRHLVERGHRRIGIVGAQLDPRSLRRCEGCRQSLRDAGLYDPALEIMTPEKSSIA 243 Query: 246 MGAQLLRRVLEQHPECDSVFCCNDDLALGALFECQRQGISVPREMAIAGFNDLSWAACAT 305 +GA LL +L +HP+CD+VF CNDDLA GA+F+C R G+SVP ++A+ GF+D + A T Sbjct: 244 LGATLLETLLARHPDCDAVFFCNDDLAQGAVFQCGRLGVSVPGQVALVGFHDFAGTAWTT 303 Query: 306 PSITTVVTPRYDIGYKSAEMLVRQLKGEDIPKGRLDLGFELALREST 352 P ++T+ TPRY+IG ++A++L+R L G+ I + +DLGF L RE+T Sbjct: 304 PPLSTIATPRYEIGREAAQLLMRHLAGQPIAQRHVDLGFTLVRRETT 350 >ref|YP_004846383.1| lacI family transcriptional regulator [Pseudogulbenkiania sp. NH8B] dbj|BAK75969.1| transcriptional regulator, LacI family [Pseudogulbenkiania sp. NH8B] Length = 339 Score = 310 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 176/333 (52%), Positives = 221/333 (66%), Gaps = 2/333 (0%) Query: 21 RATGRVTIIDVAAEAGVSPMTVSRALKNPRLVQEQSRQRILEAIDRLGYVPNQAASTLAS 80 R+ VT+ DV GVS +TVSRAL +P V + R +ILEA+DRLGYVPN++A LAS Sbjct: 8 RSGSGVTMHDVGLAVGVSAITVSRALYSPERVSDTLRSKILEAVDRLGYVPNRSARALAS 67 Query: 81 ARSQVIAVLVPSLTNAVFIETLSGIRDYLAGAGYQFLIGETGYVRAKEEQLIATYLAHAP 140 ARSQ + VL+PSLTN VFI+TL+GI D L AGYQ LIG T Y +E QL+ YL H P Sbjct: 68 ARSQTVLVLIPSLTNTVFIDTLAGIEDVLRPAGYQMLIGNTHYSAGEEMQLLRAYLEHQP 127 Query: 141 AGFLLSSSEQHDILRRQLAAANIPAVRMFDLGKSNSDMSVGFSQTKAGYAAARHLIERGY 200 G L++ Q + L IPAV M DL ++ VGFSQ AG A RHL+ERG Sbjct: 128 DGVLVTGLSQPPEFAQTLERQGIPAVYMMDL-TTDGRRCVGFSQEDAGEAITRHLLERGR 186 Query: 201 RRPAFLAAQLDPRMMKRREGFRKGLSEAG-LDPDVEVLLPEPTTVDMGAQLLRRVLEQHP 259 RR AF+ AQLD R++KR +G+RK L AG D +E L P P+T+ MGA L R+L+ HP Sbjct: 187 RRIAFMGAQLDERVLKRLDGYRKALRAAGRYDAALEDLDPAPSTMQMGADALTRLLQAHP 246 Query: 260 ECDSVFCCNDDLALGALFECQRQGISVPREMAIAGFNDLSWAACATPSITTVVTPRYDIG 319 +CD+VFCCNDDLA+GAL CQR G++VP+ MAIAGFNDL A TP +TTV TPRY IG Sbjct: 247 DCDAVFCCNDDLAIGALAACQRLGLAVPQRMAIAGFNDLQPAGWVTPPLTTVATPRYRIG 306 Query: 320 YKSAEMLVRQLKGEDIPKGRLDLGFELALREST 352 ++A +L+ + GE DLGF + R S+ Sbjct: 307 TEAARLLLASIAGEADAVTCHDLGFTVMPRASS 339