BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0898.p         (336 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774513.1| hypothetical protein Hsero_1088 [Herbaspiril...   206   6e-51
ref|YP_003776437.1| cell wall surface anchor protein [Herbaspiri...   140   4e-31
ref|YP_003777877.1| autotransporter adhesin protein [Herbaspiril...    80   7e-13

>ref|YP_003774513.1| hypothetical protein Hsero_1088 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62605.1| hypothetical protein Hsero_1088 [Herbaspirillum seropedicae SmR1]
          Length = 8016

 Score =  206 bits (523), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 120/177 (67%), Positives = 152/177 (85%), Gaps = 1/177 (0%)

Query: 1   MTVTVLKLSDADAYLKNISIKSIKDVRALDVDLLLVLVNGDRIIINNGAVNALSSPDSSL 60
           MT TVLKLS++ A+LK IS+KSIKDVRALDVDLLLVL NGD+I+I+ GA++AL+SPD +L
Sbjct: 1   MTTTVLKLSESSAFLKTISLKSIKDVRALDVDLLLVLTNGDQILISGGAMHALNSPDMAL 60

Query: 61  QFADGQLPFSTMFQQIDKIDVSPEANLTVSSKEITRYNQNNARNKKARKNDEEDSDKPVV 120
           QF+DGQLP + +F+QI++I+VSPEANLTVSSKEITRYNQNNAR KKAR+ DEE  DKP++
Sbjct: 61  QFSDGQLPLARVFEQIERINVSPEANLTVSSKEITRYNQNNARKKKARQQDEE-GDKPII 119

Query: 121 VEDGERDPSAAAETSGSSGNTERPNFSPTRSPDNQSQIADAEINSQHEKNWGVQWPI 177
             D E+DP AA ET+G+ GNT   ++SP RS DN+ Q+A+AEI+S+ EK+WGVQWPI
Sbjct: 120 SPDDEKDPVAATETNGTGGNTNSTDYSPIRSTDNRKQLAEAEISSEKEKSWGVQWPI 176


>ref|YP_003776437.1| cell wall surface anchor protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64529.1| cell wall surface anchor protein [Herbaspirillum seropedicae SmR1]
          Length = 7175

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 77/128 (60%), Positives = 96/128 (75%), Gaps = 1/128 (0%)

Query: 50  VNALSSPDSSLQFADGQLPFSTMFQQIDKIDVSPEANLTVSSKEITRYNQNNARNKKARK 109
           + AL++P++ LQFADGQL    MFQQID+I+VSPEANLT+SSKEITRYNQN  +  KA++
Sbjct: 1   MQALNAPETPLQFADGQLQMGRMFQQIDQINVSPEANLTISSKEITRYNQNTIKASKAKR 60

Query: 110 NDEEDSDKPVVVEDGERDPSAAAETSGSSGNTERPNFSPTRSPDNQSQIADAEINSQHEK 169
             E+DS KPVV E GE+ P  A   +G  GN  +P  SP ++PD Q Q+AD EINS+ EK
Sbjct: 61  T-EDDSQKPVVAEQGEKAPEVADPNTGVPGNIAQPESSPVKTPDMQKQMADVEINSRSEK 119

Query: 170 NWGVQWPI 177
           NWGVQWPI
Sbjct: 120 NWGVQWPI 127


>ref|YP_003777877.1| autotransporter adhesin protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ65969.1| autotransporter adhesin protein; hemagglutinin/hemolysin protein
           [Herbaspirillum seropedicae SmR1]
          Length = 3631

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 52/153 (33%), Positives = 88/153 (57%), Gaps = 4/153 (2%)

Query: 1   MTVTVLKLSDADAYLKNISIKSIKDVRALDVDLLLVLVNGDRIIINNGAVNALSSPDSSL 60
           M++TV  L++A A L+ I  + I DVRA+D+DL+L+L NG ++II+ GA  A ++P  +L
Sbjct: 57  MSITVSNLTEASALLRTIKKRDILDVRAIDLDLVLILENGHKLIISRGAAAAANTPQLTL 116

Query: 61  QFADGQLPFSTMFQQIDKIDVSPEA--NLTVSSKEITRYNQNNARNKKARKNDEEDSDKP 118
           +FADG +    +F++++ I+V P+     T++ +EI RY        K  KNDE   ++ 
Sbjct: 117 EFADGDVALGEVFEKLNHIEVPPDTPPAATLTPQEIKRYGIKRVVKGKTTKNDENTDEQQ 176

Query: 119 VVVEDGERD--PSAAAETSGSSGNTERPNFSPT 149
              +    D  P+ A  +S S   ++  + S T
Sbjct: 177 TASKPETTDGKPADALASSDSPSVSQHSDASST 209