BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0895.p (474 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774508.1| MocR family transcription regulator protein ... 940 0.0 ref|YP_004755028.1| putative GntR-family regulatory protein and ... 757 0.0 ref|ZP_02486530.1| transcriptional regulator, GntR family protei... 560 e-157 ref|YP_001063497.1| GntR family transcriptional regulator [Burkh... 559 e-157 ref|YP_111745.1| GntR family regulatory protein [Burkholderia ps... 559 e-157 >ref|YP_003774508.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62600.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 940 bits (2430), Expect = 0.0, Method: Composition-based stats. Identities = 459/472 (97%), Positives = 470/472 (99%) Query: 2 PVNRQIYQLIREAILAHTLPAGMQLPSSRDLALELGTSRNTVTYAYEQLLAEGYLESRTG 61 PVNRQIYQLIREAILAHTLPAGMQLPSSRDLALELG+SRNTVTYAYEQLLAEGYLESR G Sbjct: 44 PVNRQIYQLIREAILAHTLPAGMQLPSSRDLALELGSSRNTVTYAYEQLLAEGYLESRPG 103 Query: 62 AGTFVADTAPDQIPEAVERKEPLTDPSGKSELSARGALLTRQAGVGERQWGAFMPGVPDV 121 AGTFVADTAPDQIPEAVER EPLTDPSGKSELSARGA+LTRQAGVGERQWGAFMPGVPDV Sbjct: 104 AGTFVADTAPDQIPEAVERPEPLTDPSGKSELSARGAMLTRQAGVGERQWGAFMPGVPDV 163 Query: 122 TCVPHKIWGRLQNKHWRRSSSDLLTYGPGAGYAGLREQIAEYLRVARSVNCTPSQVLITT 181 TCVP+KIWGRLQNKHWRRS++DLLTYGPGAGYAGLREQIAEYLRVARSVNCTPSQVLITT Sbjct: 164 TCVPYKIWGRLQNKHWRRSNADLLTYGPGAGYAGLREQIAEYLRVARSVNCTPSQVLITT 223 Query: 182 GIHQSIDIVVKLLGEHGDTAWVEDPCYWGTRSVLNSLGIQSVPIAVDQEGMRMRLANLRR 241 GIHQS+DIVVKLLGEHGD+AWVEDPCYWGTRSVLNSLGIQSVPIAVDQEGMRMRLANLRR Sbjct: 224 GIHQSLDIVVKLLGEHGDSAWVEDPCYWGTRSVLNSLGIQSVPIAVDQEGMRMRLANLRR 283 Query: 242 PPRFICTTPSHQYPLGMVMSLSRRRMLLEYAATHKVWIIEDDYDSEFRYGGRPLASLQGM 301 PPRFICTTPSHQYPLGMVMSLSRRRMLLEYAATHKVWIIEDDYDSEFRYGGRPLASLQGM Sbjct: 284 PPRFICTTPSHQYPLGMVMSLSRRRMLLEYAATHKVWIIEDDYDSEFRYGGRPLASLQGM 343 Query: 302 DTQDRVLYMGTFSKIMFPGLRIGFLVVPESLAKAFATGIAELYRNGQVFLQATLADFMAE 361 DTQDRVLYMGTFSKIMFPGLRIGFLVVPESLA+AF+TGIAELYRNGQVFLQATLADFMAE Sbjct: 344 DTQDRVLYMGTFSKIMFPGLRIGFLVVPESLARAFSTGIAELYRNGQVFLQATLADFMAE 403 Query: 362 GHFASHIRKMRVLYAERLQLLQQSINRHFGEKMTITGGEAGLHLVLGLPQECDDVLICEE 421 GHFASHIRKMRVLYAERLQLLQQSINRHFGEKMTITGGEAGLHLVLGLPQECDDVLICE+ Sbjct: 404 GHFASHIRKMRVLYAERLQLLQQSINRHFGEKMTITGGEAGLHLVLGLPQECDDVLICEQ 463 Query: 422 ALAAGIVVRPLSRYYMHARGARRGLLLGYASVPNEEIARAFDKLAAVIKPHL 473 ALAAGIVVRPLSRYYMHARGARRGLLLGYASVPN+EIARAFDKLAAVIKPHL Sbjct: 464 ALAAGIVVRPLSRYYMHARGARRGLLLGYASVPNDEIARAFDKLAAVIKPHL 515 >ref|YP_004755028.1| putative GntR-family regulatory protein and aminotransferase near polyamine transporter [Collimonas fungivorans Ter331] gb|AEK64205.1| Putative GntR-family regulatory protein and aminotransferase near polyamine transporter [Collimonas fungivorans Ter331] Length = 499 Score = 757 bits (1954), Expect = 0.0, Method: Composition-based stats. Identities = 364/471 (77%), Positives = 406/471 (86%) Query: 2 PVNRQIYQLIREAILAHTLPAGMQLPSSRDLALELGTSRNTVTYAYEQLLAEGYLESRTG 61 P+NRQIYQ IREAIL+ LP+G QLPSSRDLA EL SRNTVTYAYEQL+AEGYLE+R G Sbjct: 27 PLNRQIYQAIREAILSQLLPSGWQLPSSRDLARELAISRNTVTYAYEQLIAEGYLETRAG 86 Query: 62 AGTFVADTAPDQIPEAVERKEPLTDPSGKSELSARGALLTRQAGVGERQWGAFMPGVPDV 121 +GTF+ADT PDQIPE PLTDPSG+SELSA GALL +QAGV + QWG FMPGVPDV Sbjct: 87 SGTFIADTTPDQIPEIRLNTPPLTDPSGQSELSAHGALLIQQAGVSDLQWGPFMPGVPDV 146 Query: 122 TCVPHKIWGRLQNKHWRRSSSDLLTYGPGAGYAGLREQIAEYLRVARSVNCTPSQVLITT 181 T P+KIW RLQNKHWRRS ++LLTYG GY LRE +AEYLR+ARSVNCT +QV+ITT Sbjct: 147 TLFPNKIWSRLQNKHWRRSRAELLTYGDAGGYLPLREAVAEYLRIARSVNCTANQVIITT 206 Query: 182 GIHQSIDIVVKLLGEHGDTAWVEDPCYWGTRSVLNSLGIQSVPIAVDQEGMRMRLANLRR 241 GIHQS+DIVVKLLGEHGD+AWVEDPCYWGTRSVLNSLGI+ V I VD EGMRMRLANLR+ Sbjct: 207 GIHQSLDIVVKLLGEHGDSAWVEDPCYWGTRSVLNSLGIKPVAIPVDAEGMRMRLANLRQ 266 Query: 242 PPRFICTTPSHQYPLGMVMSLSRRRMLLEYAATHKVWIIEDDYDSEFRYGGRPLASLQGM 301 PPRFIC TPSHQYPLGMVMSLSRRRMLLEYAAT KVWIIEDDYDSEFRYG RPLASLQGM Sbjct: 267 PPRFICATPSHQYPLGMVMSLSRRRMLLEYAATRKVWIIEDDYDSEFRYGSRPLASLQGM 326 Query: 302 DTQDRVLYMGTFSKIMFPGLRIGFLVVPESLAKAFATGIAELYRNGQVFLQATLADFMAE 361 DT DRVLYMGTFSK MFP LRIGF+VVPE+LA AFA G++ELYR QVF+QA +ADFM E Sbjct: 327 DTDDRVLYMGTFSKTMFPSLRIGFMVVPETLATAFAIGVSELYRGSQVFMQAVMADFMTE 386 Query: 362 GHFASHIRKMRVLYAERLQLLQQSINRHFGEKMTITGGEAGLHLVLGLPQECDDVLICEE 421 GHFASHIR+MRVLYAERL LLQ +I RHFG+++T+TGGEAGLHL LGLP++CDD+ I Sbjct: 387 GHFASHIRRMRVLYAERLHLLQAAIERHFGDRITLTGGEAGLHLALGLPEQCDDLAISRA 446 Query: 422 ALAAGIVVRPLSRYYMHARGARRGLLLGYASVPNEEIARAFDKLAAVIKPH 472 A A GIV RPLSRY+M+A +GLLLGYA VPNE+IA +FDKLAA+IK H Sbjct: 447 ARAEGIVARPLSRYFMNAGARHQGLLLGYACVPNEQIAPSFDKLAAIIKTH 497 >ref|ZP_02486530.1| transcriptional regulator, GntR family protein [Burkholderia pseudomallei 7894] ref|ZP_02510742.1| transcriptional regulator, GntR family protein [Burkholderia pseudomallei BCC215] Length = 509 Score = 560 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 273/481 (56%), Positives = 349/481 (72%), Gaps = 10/481 (2%) Query: 2 PVNRQIYQLIREAILAHTLPAGMQLPSSRDLALELGTSRNTVTYAYEQLLAEGYLESRTG 61 P+ RQ+ +L+++AIL+ L G +LPSSR LA +L +RNTV + Y+QL EGY+ + TG Sbjct: 21 PMYRQLLRLMQQAILSGELTPGTKLPSSRTLATDLAIARNTVLHVYDQLTTEGYVLTTTG 80 Query: 62 AGTFVADTAPDQIPEAVERKEPLTDPSGKSE---------LSARGALLTRQAGVGERQWG 112 +GT+VADT PD + P PS ++ LSARGA L R AGV RQWG Sbjct: 81 SGTYVADTRPDAAAMRAQAGAP-AHPSDETRDAQQRAHGALSARGAQLIRHAGVSRRQWG 139 Query: 113 AFMPGVPDVTCVPHKIWGRLQNKHWRRSSSDLLTYGPGAGYAGLREQIAEYLRVARSVNC 172 AFMPGVPDV+ P + W RLQ + W+ ++ +LLTY PG GY LR +++YLRVARSV C Sbjct: 140 AFMPGVPDVSEFPTRTWSRLQARLWKEANPELLTYAPGGGYRPLRRALSDYLRVARSVKC 199 Query: 173 TPSQVLITTGIHQSIDIVVKLLGEHGDTAWVEDPCYWGTRSVLNSLGIQSVPIAVDQEGM 232 +P Q++ITTGIHQSID+ V+LL + GD AWVE+PCYWG RSVL + G+ P+ VDQEG+ Sbjct: 200 SPDQIIITTGIHQSIDLSVRLLADVGDRAWVEEPCYWGVRSVLQAAGLALAPVPVDQEGL 259 Query: 233 RMRLANLRRPPRFICTTPSHQYPLGMVMSLSRRRMLLEYAATHKVWIIEDDYDSEFRYGG 292 R +L+RPPR + TPSHQYPLGMVMSL+RRRMLLEYA H+ WIIEDDYDSEFRYG Sbjct: 260 APRAQDLKRPPRLVLVTPSHQYPLGMVMSLARRRMLLEYARQHQCWIIEDDYDSEFRYGS 319 Query: 293 RPLASLQGMDTQDRVLYMGTFSKIMFPGLRIGFLVVPESLAKAFATGIAELYRNGQVFLQ 352 RPLASLQG+D RV+Y+G+ K++FP LR+G++VVPE L + F TG++ELYR GQ+ Q Sbjct: 320 RPLASLQGLDDAGRVIYVGSLGKMLFPSLRLGYMVVPEHLVETFRTGLSELYREGQLMQQ 379 Query: 353 ATLADFMAEGHFASHIRKMRVLYAERLQLLQQSINRHFGEKMTITGGEAGLHLVLGLPQE 412 A LA+F+ +G+ SH+R+MR LY ER QLL +I+ FG+ + + G EAGLHLV+GLP Sbjct: 380 AVLAEFIMDGYLTSHVRRMRALYGERRQLLIDAIHARFGDALPVMGDEAGLHLVIGLPNG 439 Query: 413 CDDVLICEEALAAGIVVRPLSRYYMHARGARRGLLLGYASVPNEEIARAFDKLAAVIKPH 472 CDD I + A AG++VRPL+ YY HA AR GLLLGYA VPNE IA AFD LA +I+ H Sbjct: 440 CDDRAITQTAFDAGVIVRPLTTYYNHADTAREGLLLGYACVPNERIAPAFDTLAQIIEAH 499 Query: 473 L 473 L Sbjct: 500 L 500 >ref|YP_001063497.1| GntR family transcriptional regulator [Burkholderia pseudomallei 668] ref|ZP_03453914.1| transcriptional regulator, GntR family/aminotransferase family protein [Burkholderia pseudomallei 576] ref|ZP_04522213.1| transcriptional regulator, GntR family [Burkholderia pseudomallei MSHR346] gb|ABN87439.1| transcriptional regulator, GntR family/aminotransferase [Burkholderia pseudomallei 668] gb|EEC34661.1| transcriptional regulator, GntR family/aminotransferase family protein [Burkholderia pseudomallei 576] gb|EEP51127.1| transcriptional regulator, GntR family [Burkholderia pseudomallei MSHR346] Length = 506 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 273/481 (56%), Positives = 349/481 (72%), Gaps = 10/481 (2%) Query: 2 PVNRQIYQLIREAILAHTLPAGMQLPSSRDLALELGTSRNTVTYAYEQLLAEGYLESRTG 61 P+ RQ+ +L+++AIL+ L G +LPSSR LA +L +RNTV + Y+QL EGY+ + TG Sbjct: 18 PMYRQLLRLMQQAILSGELTPGTKLPSSRTLATDLAIARNTVLHVYDQLTTEGYVLTTTG 77 Query: 62 AGTFVADTAPDQIPEAVERKEPLTDPSGKSE---------LSARGALLTRQAGVGERQWG 112 +GT+VADT PD + P PS ++ LSARGA L R AGV RQWG Sbjct: 78 SGTYVADTRPDAAAMRAQAGAP-AHPSDETRDAQQRAHGALSARGAQLIRHAGVSRRQWG 136 Query: 113 AFMPGVPDVTCVPHKIWGRLQNKHWRRSSSDLLTYGPGAGYAGLREQIAEYLRVARSVNC 172 AFMPGVPDV+ P + W RLQ + W+ ++ +LLTY PG GY LR +++YLRVARSV C Sbjct: 137 AFMPGVPDVSEFPTRTWSRLQARLWKEANPELLTYAPGGGYRPLRRALSDYLRVARSVKC 196 Query: 173 TPSQVLITTGIHQSIDIVVKLLGEHGDTAWVEDPCYWGTRSVLNSLGIQSVPIAVDQEGM 232 +P Q++ITTGIHQSID+ V+LL + GD AWVE+PCYWG RSVL + G+ P+ VDQEG+ Sbjct: 197 SPDQIIITTGIHQSIDLSVRLLADVGDRAWVEEPCYWGVRSVLQAAGLALAPVPVDQEGL 256 Query: 233 RMRLANLRRPPRFICTTPSHQYPLGMVMSLSRRRMLLEYAATHKVWIIEDDYDSEFRYGG 292 R +L+RPPR + TPSHQYPLGMVMSL+RRRMLLEYA H+ WIIEDDYDSEFRYG Sbjct: 257 APRAQDLKRPPRLVLVTPSHQYPLGMVMSLARRRMLLEYARQHQCWIIEDDYDSEFRYGS 316 Query: 293 RPLASLQGMDTQDRVLYMGTFSKIMFPGLRIGFLVVPESLAKAFATGIAELYRNGQVFLQ 352 RPLASLQG+D RV+Y+G+ K++FP LR+G++VVPE L + F TG++ELYR GQ+ Q Sbjct: 317 RPLASLQGLDDAGRVIYVGSLGKMLFPSLRLGYMVVPEHLVETFRTGLSELYREGQLMQQ 376 Query: 353 ATLADFMAEGHFASHIRKMRVLYAERLQLLQQSINRHFGEKMTITGGEAGLHLVLGLPQE 412 A LA+F+ +G+ SH+R+MR LY ER QLL +I+ FG+ + + G EAGLHLV+GLP Sbjct: 377 AVLAEFIMDGYLTSHVRRMRALYGERRQLLIDAIHARFGDALPVMGDEAGLHLVIGLPNG 436 Query: 413 CDDVLICEEALAAGIVVRPLSRYYMHARGARRGLLLGYASVPNEEIARAFDKLAAVIKPH 472 CDD I + A AG++VRPL+ YY HA AR GLLLGYA VPNE IA AFD LA +I+ H Sbjct: 437 CDDRAITQTAFDAGVIVRPLTTYYNHADTAREGLLLGYACVPNERIAPAFDTLAQIIEAH 496 Query: 473 L 473 L Sbjct: 497 L 497 >ref|YP_111745.1| GntR family regulatory protein [Burkholderia pseudomallei K96243] emb|CAH39214.1| putative GntR-family regulatory protein [Burkholderia pseudomallei K96243] Length = 509 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 273/481 (56%), Positives = 349/481 (72%), Gaps = 10/481 (2%) Query: 2 PVNRQIYQLIREAILAHTLPAGMQLPSSRDLALELGTSRNTVTYAYEQLLAEGYLESRTG 61 P+ RQ+ +L+++AIL+ L G +LPSSR LA +L +RNTV + Y+QL EGY+ + TG Sbjct: 21 PMYRQLLRLMQQAILSGELTPGTKLPSSRTLATDLAIARNTVLHVYDQLTTEGYVLTTTG 80 Query: 62 AGTFVADTAPDQIPEAVERKEPLTDPSGKSE---------LSARGALLTRQAGVGERQWG 112 +GT+VADT PD + P PS ++ LSARGA L R AGV RQWG Sbjct: 81 SGTYVADTRPDAAAMRAQAGAP-AHPSDETRGAQQRAHGALSARGAQLIRHAGVSRRQWG 139 Query: 113 AFMPGVPDVTCVPHKIWGRLQNKHWRRSSSDLLTYGPGAGYAGLREQIAEYLRVARSVNC 172 AFMPGVPDV+ P + W RLQ + W+ ++ +LLTY PG GY LR +++YLRVARSV C Sbjct: 140 AFMPGVPDVSEFPTRTWSRLQARLWKEANPELLTYAPGGGYRPLRRALSDYLRVARSVKC 199 Query: 173 TPSQVLITTGIHQSIDIVVKLLGEHGDTAWVEDPCYWGTRSVLNSLGIQSVPIAVDQEGM 232 +P Q++ITTGIHQSID+ V+LL + GD AWVE+PCYWG RSVL + G+ P+ VDQEG+ Sbjct: 200 SPDQIIITTGIHQSIDLSVRLLADVGDRAWVEEPCYWGVRSVLQAAGLALAPVPVDQEGL 259 Query: 233 RMRLANLRRPPRFICTTPSHQYPLGMVMSLSRRRMLLEYAATHKVWIIEDDYDSEFRYGG 292 R +L+RPPR + TPSHQYPLGMVMSL+RRRMLLEYA H+ WIIEDDYDSEFRYG Sbjct: 260 APRAQDLKRPPRLVLVTPSHQYPLGMVMSLARRRMLLEYARQHQCWIIEDDYDSEFRYGS 319 Query: 293 RPLASLQGMDTQDRVLYMGTFSKIMFPGLRIGFLVVPESLAKAFATGIAELYRNGQVFLQ 352 RPLASLQG+D RV+Y+G+ K++FP LR+G++VVPE L + F TG++ELYR GQ+ Q Sbjct: 320 RPLASLQGLDDAGRVIYVGSLGKMLFPSLRLGYMVVPEHLVETFRTGLSELYREGQLMQQ 379 Query: 353 ATLADFMAEGHFASHIRKMRVLYAERLQLLQQSINRHFGEKMTITGGEAGLHLVLGLPQE 412 A LA+F+ +G+ SH+R+MR LY ER QLL +I+ FG+ + + G EAGLHLV+GLP Sbjct: 380 AVLAEFIMDGYLTSHVRRMRALYGERRQLLIDAIHARFGDALPVMGDEAGLHLVIGLPNG 439 Query: 413 CDDVLICEEALAAGIVVRPLSRYYMHARGARRGLLLGYASVPNEEIARAFDKLAAVIKPH 472 CDD I + A AG++VRPL+ YY HA AR GLLLGYA VPNE IA AFD LA +I+ H Sbjct: 440 CDDRAITQTAFDAGVIVRPLTTYYNHADTAREGLLLGYACVPNERIAPAFDTLAQIIEAH 499 Query: 473 L 473 L Sbjct: 500 L 500