BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0892.p (347 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774505.1| spermidine/putrescine ABC transporter peripl... 620 e-175 ref|YP_004755025.1| ABC transporter periplasmic spermidine putre... 472 e-131 ref|YP_001890550.1| family 1 extracellular solute-binding protei... 462 e-128 ref|YP_003909860.1| extracellular solute-binding protein family ... 462 e-128 ref|YP_001899039.1| family 1 extracellular solute-binding protei... 461 e-127 >ref|YP_003774505.1| spermidine/putrescine ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62597.1| ABC-type spermidine/putrescine transport system, periplasmic protein protein [Herbaspirillum seropedicae SmR1] Length = 347 Score = 620 bits (1598), Expect = e-175, Method: Composition-based stats. Identities = 332/347 (95%), Positives = 337/347 (97%) Query: 1 MKRLTPALLSPLFLGLLFSGAASAAELTLVNFGGANGNAQKVAYVEPFQKSTGTKVVTAE 60 MKRLTPALLSPL LGLLFSGAA AAELT+VNFGGANGNAQKVAYVEPFQKSTGTKVVTAE Sbjct: 1 MKRLTPALLSPLALGLLFSGAACAAELTVVNFGGANGNAQKVAYVEPFQKSTGTKVVTAE 60 Query: 61 FNGELAKVKAMVETKKVSWDVVEIDGGDLTRACDDGLIEKLDLAKTIKKDDYIPEATVSE 120 FNGELAKVKAMVETKKVSWDVVEIDGGDL RACDDGLIEKLDLAKTIKKDDYIPEATVSE Sbjct: 61 FNGELAKVKAMVETKKVSWDVVEIDGGDLNRACDDGLIEKLDLAKTIKKDDYIPEATVSE 120 Query: 121 CGMGAFVWSTVLAYNADKLKTAPTGWADFWDTKKYPGKRGMKKSAQYNLEFALMADGVPT 180 CGMGAFVWSTVLAYN DKLKT PTGWADFWDTKKYPGKRGMKKSAQ+NLEFALMADGVPT Sbjct: 121 CGMGAFVWSTVLAYNGDKLKTPPTGWADFWDTKKYPGKRGMKKSAQFNLEFALMADGVPT 180 Query: 181 KDVYKVLATKEGVDRAFKKLDQLKPNIQWWDAGALPAQFLASGDVVMANAYNGRIDAAQR 240 KDVYKVLATKEGVDRAFKKLDQLKPNIQWWDAGALPAQFLASGDVVMANAYNGRIDAAQR Sbjct: 181 KDVYKVLATKEGVDRAFKKLDQLKPNIQWWDAGALPAQFLASGDVVMANAYNGRIDAAQR 240 Query: 241 EGKNLKVVWAGSVYTLDYWVIPKGSPNKALAEKFINFVSQPENQKVYANNIAYGPVNKGA 300 EGKNLKVVWAGSVYTLDYWVIPKGSPNKAL EKFI+F SQP+ QK YANNIAYGPVNKGA Sbjct: 241 EGKNLKVVWAGSVYTLDYWVIPKGSPNKALGEKFISFASQPDTQKTYANNIAYGPVNKGA 300 Query: 301 LKMLDAKTLGNLPTSPANAKDAVQLSLQFWTDHGEELEQRFAAWIAK 347 LK+LDAKTL NLPTSPANAKDAVQLSLQFWTDHGEELEQRFAAWIAK Sbjct: 301 LKLLDAKTLANLPTSPANAKDAVQLSLQFWTDHGEELEQRFAAWIAK 347 >ref|YP_004755025.1| ABC transporter periplasmic spermidine putrescine-binding protein potD [Collimonas fungivorans Ter331] gb|AEK64202.1| ABC transporter, periplasmic spermidine putrescine-binding protein potD [Collimonas fungivorans Ter331] Length = 358 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 242/347 (69%), Positives = 284/347 (81%), Gaps = 1/347 (0%) Query: 1 MKRLTPALLSPLFLGLLFSGAASAAELTLVNFGGANGNAQKVAYVEPFQKSTGTKVVTAE 60 MK + + + L L G A AA LT+VNFGGANG AQKVAY++P+ K++G K+ E Sbjct: 13 MKSIFKPVFTSAVLALAAVGMAQAAALTVVNFGGANGAAQKVAYIDPYAKASGDKITVVE 72 Query: 61 FNGELAKVKAMVETKKVSWDVVEIDGGDLTRACDDGLIEKLDLAKTIKKDDYIPEATVSE 120 FNGELAKVKAMVE KKVSWD VE+D GD+ RAC++GL+EK+D +K K D+ P A + E Sbjct: 73 FNGELAKVKAMVEAKKVSWDAVEVDAGDIGRACEEGLLEKIDFSKIGNKADFNP-AAIHE 131 Query: 121 CGMGAFVWSTVLAYNADKLKTAPTGWADFWDTKKYPGKRGMKKSAQYNLEFALMADGVPT 180 CG+GAFVWSTVLAY+ADKLK+AP WADFWDTKK+PGKR +KK AQ NLEFALMADGV Sbjct: 132 CGVGAFVWSTVLAYDADKLKSAPKSWADFWDTKKFPGKRALKKGAQNNLEFALMADGVAP 191 Query: 181 KDVYKVLATKEGVDRAFKKLDQLKPNIQWWDAGALPAQFLASGDVVMANAYNGRIDAAQR 240 KDVYK+L +K GVDRAFKKLD+LKP+IQWW+AGA P QFL +GDVVM++A+NGRIDAAQR Sbjct: 192 KDVYKLLGSKAGVDRAFKKLDELKPSIQWWEAGAQPPQFLVAGDVVMSSAFNGRIDAAQR 251 Query: 241 EGKNLKVVWAGSVYTLDYWVIPKGSPNKALAEKFINFVSQPENQKVYANNIAYGPVNKGA 300 EGKNLKV W GS+YTLD+WVIPKGSPNKA AEKF+ F S+PE+QK YA+NI+YGPVN A Sbjct: 252 EGKNLKVSWTGSIYTLDFWVIPKGSPNKADAEKFVAFASKPESQKAYASNISYGPVNNQA 311 Query: 301 LKMLDAKTLGNLPTSPANAKDAVQLSLQFWTDHGEELEQRFAAWIAK 347 LK+LD K L NLPTSP NAKDA+ LS FWTDHGEELEQRF AW AK Sbjct: 312 LKLLDPKVLANLPTSPTNAKDALALSQSFWTDHGEELEQRFTAWAAK 358 >ref|YP_001890550.1| family 1 extracellular solute-binding protein [Burkholderia phytofirmans PsJN] gb|ACD21179.1| extracellular solute-binding protein family 1 [Burkholderia phytofirmans PsJN] Length = 349 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 233/325 (71%), Positives = 271/325 (83%), Gaps = 1/325 (0%) Query: 23 SAAELTLVNFGGANGNAQKVAYVEPFQKSTGTKVVTAEFNGELAKVKAMVETKKVSWDVV 82 +AAEL++VNFGGANG+AQKVA+ +PF+K TG KV E+NGE AKVKAMVE K V+WDVV Sbjct: 26 NAAELSVVNFGGANGDAQKVAFNQPFEKETGNKVTAVEYNGEQAKVKAMVEAKHVNWDVV 85 Query: 83 EIDGGDLTRACDDGLIEKLDLAKTIKKDDYIPEATVSECGMGAFVWSTVLAYNADKLKTA 142 E++ GD+ R CD+GL EKLD +K KK D IPEA + CG+G FVWST LAYNADKLKTA Sbjct: 86 EVESGDIGRGCDEGLYEKLDWSKIGKKSDLIPEAPQT-CGVGFFVWSTALAYNADKLKTA 144 Query: 143 PTGWADFWDTKKYPGKRGMKKSAQYNLEFALMADGVPTKDVYKVLATKEGVDRAFKKLDQ 202 P GWADFWD KK+PGKR M+K A+YNLEFALMADGVP KDVYKVLATKEG DRAFKKLD+ Sbjct: 145 PAGWADFWDVKKFPGKRAMRKGARYNLEFALMADGVPPKDVYKVLATKEGQDRAFKKLDE 204 Query: 203 LKPNIQWWDAGALPAQFLASGDVVMANAYNGRIDAAQREGKNLKVVWAGSVYTLDYWVIP 262 LKPNIQWW+AGA P QFL +GDVVM+ AYNGRIDAAQ+EGKNLKVVW GS+Y LDYW IP Sbjct: 205 LKPNIQWWEAGAQPPQFLVAGDVVMSTAYNGRIDAAQKEGKNLKVVWNGSIYDLDYWAIP 264 Query: 263 KGSPNKALAEKFINFVSQPENQKVYANNIAYGPVNKGALKMLDAKTLGNLPTSPANAKDA 322 KG+PNKALAEK+I + + Q+ YA+NIAYGPVN A+K LD KTL NLP SPAN K+A Sbjct: 265 KGTPNKALAEKYIAYSISSKPQQDYAHNIAYGPVNVAAIKALDPKTLANLPNSPANGKNA 324 Query: 323 VQLSLQFWTDHGEELEQRFAAWIAK 347 V +L FWTDHG+ELEQRF++W +K Sbjct: 325 VLQNLAFWTDHGDELEQRFSSWASK 349 >ref|YP_003909860.1| extracellular solute-binding protein family 1 [Burkholderia sp. CCGE1003] gb|ADN60569.1| extracellular solute-binding protein family 1 [Burkholderia sp. CCGE1003] Length = 349 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 234/325 (72%), Positives = 270/325 (83%), Gaps = 1/325 (0%) Query: 23 SAAELTLVNFGGANGNAQKVAYVEPFQKSTGTKVVTAEFNGELAKVKAMVETKKVSWDVV 82 +AAELT+VNFGGANG+AQK A+ +PF+ TG KV E+NGE AKVKAMVE K V+WDVV Sbjct: 26 NAAELTVVNFGGANGDAQKAAFNQPFESQTGNKVTAVEYNGEQAKVKAMVEAKHVNWDVV 85 Query: 83 EIDGGDLTRACDDGLIEKLDLAKTIKKDDYIPEATVSECGMGAFVWSTVLAYNADKLKTA 142 E++ GD+ R CD+GL EKLD +K KK D IPEA + CG+G FVWST LAYNADKLKTA Sbjct: 86 EVESGDIGRGCDEGLYEKLDWSKIGKKSDLIPEAPQT-CGVGFFVWSTALAYNADKLKTA 144 Query: 143 PTGWADFWDTKKYPGKRGMKKSAQYNLEFALMADGVPTKDVYKVLATKEGVDRAFKKLDQ 202 PTGWADFWD KK PGKR M+K A+YNLEFALMADGV KDVYKVLATKEG DRAFKKLD+ Sbjct: 145 PTGWADFWDVKKIPGKRAMRKGARYNLEFALMADGVAPKDVYKVLATKEGQDRAFKKLDE 204 Query: 203 LKPNIQWWDAGALPAQFLASGDVVMANAYNGRIDAAQREGKNLKVVWAGSVYTLDYWVIP 262 LKPNIQWW+AGA P QFL +GDVVM+ AYNGRIDAAQ+EGKNLKVVW GS+Y LDYW IP Sbjct: 205 LKPNIQWWEAGAQPPQFLVAGDVVMSTAYNGRIDAAQKEGKNLKVVWNGSIYDLDYWAIP 264 Query: 263 KGSPNKALAEKFINFVSQPENQKVYANNIAYGPVNKGALKMLDAKTLGNLPTSPANAKDA 322 KGSPNKALAEK+I + + Q+ YA++IAYGPVN A+K LDAKTLGNLP SPAN K+A Sbjct: 265 KGSPNKALAEKYIAYTLSSKPQQDYAHHIAYGPVNVAAIKGLDAKTLGNLPNSPANGKNA 324 Query: 323 VQLSLQFWTDHGEELEQRFAAWIAK 347 V +L FWTDHG+ELEQRF++W +K Sbjct: 325 VLQNLSFWTDHGDELEQRFSSWASK 349 >ref|YP_001899039.1| family 1 extracellular solute-binding protein [Ralstonia pickettii 12J] gb|ACD26607.1| extracellular solute-binding protein family 1 [Ralstonia pickettii 12J] Length = 346 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 234/347 (67%), Positives = 277/347 (79%), Gaps = 1/347 (0%) Query: 1 MKRLTPALLSPLFLGLLFSGAASAAELTLVNFGGANGNAQKVAYVEPFQKSTGTKVVTAE 60 MK +T LS L + A AAE+T+VNFGGANG+AQK A+ +PF+ TG KV E Sbjct: 1 MKHITKTRLSVLAGAFAIAFGAHAAEITVVNFGGANGDAQKAAFNKPFEAQTGNKVTVVE 60 Query: 61 FNGELAKVKAMVETKKVSWDVVEIDGGDLTRACDDGLIEKLDLAKTIKKDDYIPEATVSE 120 +NGE AK+KAMVE K V+WDVVE++ GD+ R CD+GL EKLD +K KK D IPE+ S Sbjct: 61 YNGEQAKIKAMVEAKHVNWDVVEVESGDIGRGCDEGLFEKLDWSKIAKKSDLIPESP-ST 119 Query: 121 CGMGAFVWSTVLAYNADKLKTAPTGWADFWDTKKYPGKRGMKKSAQYNLEFALMADGVPT 180 CG+G FVWST +AYNADKLKTAPTGWADFWD KK+PGKRGM+K A+ NLEFALMADGVP Sbjct: 120 CGVGFFVWSTAMAYNADKLKTAPTGWADFWDVKKFPGKRGMRKGARGNLEFALMADGVPV 179 Query: 181 KDVYKVLATKEGVDRAFKKLDQLKPNIQWWDAGALPAQFLASGDVVMANAYNGRIDAAQR 240 KDVYKVLATK+G +RAFKKLDQLKPNIQWW+AGA P QFL +GDVVM+ A+NGRIDAAQR Sbjct: 180 KDVYKVLATKDGQNRAFKKLDQLKPNIQWWEAGAQPPQFLVAGDVVMSTAFNGRIDAAQR 239 Query: 241 EGKNLKVVWAGSVYTLDYWVIPKGSPNKALAEKFINFVSQPENQKVYANNIAYGPVNKGA 300 EGKNLKVVW GS+Y LDYW IPKG+PNKALAE++I + + Q+ YA +IAYGP N A Sbjct: 240 EGKNLKVVWNGSIYDLDYWAIPKGTPNKALAEQYIAYTLSQKPQQEYAKHIAYGPANVAA 299 Query: 301 LKMLDAKTLGNLPTSPANAKDAVQLSLQFWTDHGEELEQRFAAWIAK 347 +K LDAKT N+P SP NAK+AV +LQFWTDHG+ELEQRFA+W +K Sbjct: 300 IKALDAKTQANMPNSPENAKNAVLQNLQFWTDHGDELEQRFASWASK 346