BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0891.p (427 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774504.1| spermidine/putrescine ABC transporter permea... 707 0.0 ref|YP_004755024.1| spermidine putrescine ABC transporter permea... 570 e-160 ref|YP_001585392.1| binding-protein-dependent transport systems ... 493 e-137 ref|ZP_03571659.1| binding-protein-dependent transport systems i... 492 e-137 ref|YP_001941858.1| spermidine/putrescine transport system perme... 489 e-136 >ref|YP_003774504.1| spermidine/putrescine ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62596.1| ABC-type spermidine/putrescine transport system, permease component I protein [Herbaspirillum seropedicae SmR1] Length = 427 Score = 707 bits (1825), Expect = 0.0, Method: Composition-based stats. Identities = 412/427 (96%), Positives = 419/427 (98%) Query: 1 MTTIATRSAAAMPLAEPDPQQLKRELRAAQTRKRLGALALIAPLAIFLLLTFVAPIVALL 60 MTTIATRSAAAMPLAEPDPQQLKR+LRAAQTRKRLGALALIAPLAIFLLLTFVAPIVALL Sbjct: 1 MTTIATRSAAAMPLAEPDPQQLKRDLRAAQTRKRLGALALIAPLAIFLLLTFVAPIVALL 60 Query: 61 QRAIENPEVAATLPQTVAVLSKWDRKSALPDQAFSALAEDLARAKEDTTAGNLARRLNIE 120 QRAIENPEVAATLPQTVAVL+KWDRKSALPDQA+SALA DL RAKEDTTAGNLARRLNIE Sbjct: 61 QRAIENPEVAATLPQTVAVLAKWDRKSALPDQAYSALAADLTRAKEDTTAGNLARRLNIE 120 Query: 121 LSGSRSLVMGTARAMPLRDADGKALSPAAAREAIIALNAQWGQPEVWRVIAQNGSVYSPY 180 L+GSRSLVMGT RAMPLRDA+GK LSPAAAR+AIIALNAQWGQP+VWRVIAQNGSVYSPY Sbjct: 121 LAGSRSLVMGTTRAMPLRDAEGKPLSPAAARDAIIALNAQWGQPDVWRVIAQNGSVYSPY 180 Query: 181 YLLASLDLRQNVFGDIEAAAPESAIYRTIFGRTLWMSAVVTFITLLLAYPLAYWLSTMQE 240 YLLASLDLRQNVFGDIEAA PESAIYRTIFGRTLWMSAVVT ITLLLAYPLAYWLSTM E Sbjct: 181 YLLASLDLRQNVFGDIEAAPPESAIYRTIFGRTLWMSAVVTCITLLLAYPLAYWLSTMPE 240 Query: 241 RRANLLMILVLIPFWTSILVRVAAWIVLLQSEGLVNKALMLAGLTQSPLELVFNRVGVYI 300 RRANLLMILVLIPFWTSILVRVAAWIVLLQSEGLVNKALMLAGLTQSPLELVFNRVGVYI Sbjct: 241 RRANLLMILVLIPFWTSILVRVAAWIVLLQSEGLVNKALMLAGLTQSPLELVFNRVGVYI 300 Query: 301 SMTHILLPFMILPLYSVMKSVPPTYLKAAVSLGSHPFAAFWRVYVPQTYPGIGAGVLLVF 360 SMTHILLPFMILPLYSVMKSVP TYLKAAVSLGSHPFAAFWRVYVPQTYPGIGAGVLLVF Sbjct: 301 SMTHILLPFMILPLYSVMKSVPATYLKAAVSLGSHPFAAFWRVYVPQTYPGIGAGVLLVF 360 Query: 361 IMAGGYYITPALLGGPNEQMVSYFIAYFINTTINWGMACALGALLLAATLVLYGVYRRFA 420 IMAGGYYITPALLGGPNEQMVSYFIAYFINTTINWGMACALGALLLAATLVLYGVYRRFA Sbjct: 361 IMAGGYYITPALLGGPNEQMVSYFIAYFINTTINWGMACALGALLLAATLVLYGVYRRFA 420 Query: 421 KVDVGIS 427 KVDVGIS Sbjct: 421 KVDVGIS 427 >ref|YP_004755024.1| spermidine putrescine ABC transporter permease potB [Collimonas fungivorans Ter331] gb|AEK64201.1| Spermidine Putrescine ABC transporter permease component potB [Collimonas fungivorans Ter331] Length = 475 Score = 570 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 307/406 (75%), Positives = 352/406 (86%) Query: 21 QLKRELRAAQTRKRLGALALIAPLAIFLLLTFVAPIVALLQRAIENPEVAATLPQTVAVL 80 QLKRELR AQ RKR ALALIAPLAIFLLLTF+ PI LL+RA+ENPE+A TLP TVA L Sbjct: 69 QLKRELRQAQFRKRAAALALIAPLAIFLLLTFLVPIAMLLKRAVENPEIATTLPHTVAAL 128 Query: 81 SKWDRKSALPDQAFSALAEDLARAKEDTTAGNLARRLNIELSGSRSLVMGTARAMPLRDA 140 S WDRKS+ PD A++ LA DL +A+ED++AG+LARRLN E+SG+RS++M TARA+PL DA Sbjct: 129 SNWDRKSSPPDAAYAGLATDLLQAREDSSAGSLARRLNSEISGARSIIMKTARALPLLDA 188 Query: 141 DGKALSPAAAREAIIALNAQWGQPEVWRVIAQNGSVYSPYYLLASLDLRQNVFGDIEAAA 200 DGK L PA ++A+I ++ QW Q W+VIA+NG+ YSPYYLLA+LDL+Q+VFG IE A Sbjct: 189 DGKPLPPAQIKQALIDIDEQWQQLPYWQVIAKNGAPYSPYYLLAALDLKQDVFGHIEKAD 248 Query: 201 PESAIYRTIFGRTLWMSAVVTFITLLLAYPLAYWLSTMQERRANLLMILVLIPFWTSILV 260 P++++Y+ IFGRT WM V T L+L YPLAYWLSTM ERRANL MILVLIPFWTSILV Sbjct: 249 PDASVYQKIFGRTFWMGLVATLACLVLGYPLAYWLSTMSERRANLFMILVLIPFWTSILV 308 Query: 261 RVAAWIVLLQSEGLVNKALMLAGLTQSPLELVFNRVGVYISMTHILLPFMILPLYSVMKS 320 RVAAWIVLLQSEGLVNKALM GLTQ+PLEL+FNR+GVYI+MTHILLPFMILPLYSVMK+ Sbjct: 309 RVAAWIVLLQSEGLVNKALMATGLTQAPLELLFNRIGVYIAMTHILLPFMILPLYSVMKA 368 Query: 321 VPPTYLKAAVSLGSHPFAAFWRVYVPQTYPGIGAGVLLVFIMAGGYYITPALLGGPNEQM 380 +PPTYL+AAVSLGSHPFAAFWRVYVPQTYPGIGAG LLVFI++ GYYITPALLGGPNEQM Sbjct: 369 IPPTYLRAAVSLGSHPFAAFWRVYVPQTYPGIGAGALLVFILSVGYYITPALLGGPNEQM 428 Query: 381 VSYFIAYFINTTINWGMACALGALLLAATLVLYGVYRRFAKVDVGI 426 VSY+IAYF N TINWGMACALGALL AATLVLYGVYRRF K DV + Sbjct: 429 VSYYIAYFTNVTINWGMACALGALLFAATLVLYGVYRRFTKNDVAM 474 >ref|YP_001585392.1| binding-protein-dependent transport systems inner membrane component [Burkholderia multivorans ATCC 17616] gb|ABX19100.1| binding-protein-dependent transport systems inner membrane component [Burkholderia multivorans ATCC 17616] Length = 462 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 280/405 (69%), Positives = 326/405 (80%) Query: 22 LKRELRAAQTRKRLGALALIAPLAIFLLLTFVAPIVALLQRAIENPEVAATLPQTVAVLS 81 LKREL+AA+ RKR AL LIAPLAIFLLL FV PI LL RA++NPE+AA LP TVA LS Sbjct: 57 LKRELKAAEARKRTMALLLIAPLAIFLLLVFVVPIGTLLTRAVQNPEIAAALPNTVAALS 116 Query: 82 KWDRKSALPDQAFSALAEDLARAKEDTTAGNLARRLNIELSGSRSLVMGTARAMPLRDAD 141 WDRK+ D A++ALA D+ + + G LARRLN E+ G RSLV TARAMPL++ D Sbjct: 117 HWDRKTPPADAAYAALAADMTKVADSDAMGALARRLNTEIPGYRSLVAKTARAMPLKNDD 176 Query: 142 GKALSPAAAREAIIALNAQWGQPEVWRVIAQNGSVYSPYYLLASLDLRQNVFGDIEAAAP 201 G AL+PA R +I L+A+WG+ W+ IA+NGS YSP+YLLA+LD +Q+ FG I A P Sbjct: 177 GTALTPAGTRSKLIELDARWGEVAYWQAIAKNGSTYSPFYLLAALDHKQDGFGHIVHADP 236 Query: 202 ESAIYRTIFGRTLWMSAVVTFITLLLAYPLAYWLSTMQERRANLLMILVLIPFWTSILVR 261 + +IY IFGRT + VT LLL YPLAYW+ST+ ERRANL MILVLIPFWTS+LVR Sbjct: 237 DQSIYLAIFGRTFVIGIAVTLFALLLGYPLAYWISTLSERRANLAMILVLIPFWTSVLVR 296 Query: 262 VAAWIVLLQSEGLVNKALMLAGLTQSPLELVFNRVGVYISMTHILLPFMILPLYSVMKSV 321 VAAWIVLLQ+EGL+NKAL+ +GL PL L+FNRVGVYISMTHILLPFMILPLYSVMKS+ Sbjct: 297 VAAWIVLLQNEGLINKALIGSGLLAHPLALLFNRVGVYISMTHILLPFMILPLYSVMKSI 356 Query: 322 PPTYLKAAVSLGSHPFAAFWRVYVPQTYPGIGAGVLLVFIMAGGYYITPALLGGPNEQMV 381 PPTY +AAVSLGSHPFAAFWRVYVPQTYPG+GAG LLVFI+A GYYITPALLGGPN+QMV Sbjct: 357 PPTYQRAAVSLGSHPFAAFWRVYVPQTYPGVGAGALLVFILAIGYYITPALLGGPNDQMV 416 Query: 382 SYFIAYFINTTINWGMACALGALLLAATLVLYGVYRRFAKVDVGI 426 SY++AYF N TINWGMACALG LLLAATLVLY VY RF + +V + Sbjct: 417 SYYVAYFTNVTINWGMACALGGLLLAATLVLYAVYGRFTRTNVSL 461 >ref|ZP_03571659.1| binding-protein-dependent transport systems inner membrane component [Burkholderia multivorans CGD2M] ref|ZP_03580852.1| binding-protein-dependent transport systems inner membrane component [Burkholderia multivorans CGD2] gb|EEE04782.1| binding-protein-dependent transport systems inner membrane component [Burkholderia multivorans CGD2] gb|EEE13467.1| binding-protein-dependent transport systems inner membrane component [Burkholderia multivorans CGD2M] Length = 421 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 281/405 (69%), Positives = 327/405 (80%) Query: 22 LKRELRAAQTRKRLGALALIAPLAIFLLLTFVAPIVALLQRAIENPEVAATLPQTVAVLS 81 LKREL+AA+ RKR AL LIAPLAIFLLL FV PI LL RA++NPE+AA LP TVA LS Sbjct: 16 LKRELKAAEARKRTMALLLIAPLAIFLLLVFVVPIGTLLTRAVQNPEIAAALPNTVAALS 75 Query: 82 KWDRKSALPDQAFSALAEDLARAKEDTTAGNLARRLNIELSGSRSLVMGTARAMPLRDAD 141 KWDRK+ D A++ALA D+ + + G LARRLN E+ G RSLV TARAMPL+ D Sbjct: 76 KWDRKTPPADAAYAALATDMTKVADSDAMGALARRLNTEIPGYRSLVAKTARAMPLKSDD 135 Query: 142 GKALSPAAAREAIIALNAQWGQPEVWRVIAQNGSVYSPYYLLASLDLRQNVFGDIEAAAP 201 G AL+PA R +I L+A+WG+ W+ IA+NGS YSP+YLLA+LD +Q+ FG+I A P Sbjct: 136 GAALTPAGTRSKLIELDARWGEIAYWQAIAKNGSAYSPFYLLAALDHKQDGFGNIVHADP 195 Query: 202 ESAIYRTIFGRTLWMSAVVTFITLLLAYPLAYWLSTMQERRANLLMILVLIPFWTSILVR 261 + +IY IFGRT + VT LLL YPLAYW+ST+ ERRANL MILVLIPFWTS+LVR Sbjct: 196 DQSIYLAIFGRTFVIGIAVTLFALLLGYPLAYWISTLSERRANLAMILVLIPFWTSVLVR 255 Query: 262 VAAWIVLLQSEGLVNKALMLAGLTQSPLELVFNRVGVYISMTHILLPFMILPLYSVMKSV 321 VAAWIVLLQ+EGL+NKAL+ +GL PL L+FNRVGVYISMTHILLPFMILPLYSVMKS+ Sbjct: 256 VAAWIVLLQNEGLINKALIGSGLLAHPLALLFNRVGVYISMTHILLPFMILPLYSVMKSI 315 Query: 322 PPTYLKAAVSLGSHPFAAFWRVYVPQTYPGIGAGVLLVFIMAGGYYITPALLGGPNEQMV 381 PPTY +AAVSLGSHPFAAFWRVYVPQTYPG+GAG LLVFI+A GYYITPALLGGPN+QMV Sbjct: 316 PPTYQRAAVSLGSHPFAAFWRVYVPQTYPGVGAGALLVFILAIGYYITPALLGGPNDQMV 375 Query: 382 SYFIAYFINTTINWGMACALGALLLAATLVLYGVYRRFAKVDVGI 426 SY++AYF N TINWGMACALG LLLAATLVLY VY RF + +V + Sbjct: 376 SYYVAYFTNVTINWGMACALGGLLLAATLVLYAVYGRFTRTNVSL 420 >ref|YP_001941858.1| spermidine/putrescine transport system permease protein [Burkholderia multivorans ATCC 17616] dbj|BAG47868.1| spermidine/putrescine transport system permease protein [Burkholderia multivorans ATCC 17616] Length = 421 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 280/405 (69%), Positives = 326/405 (80%) Query: 22 LKRELRAAQTRKRLGALALIAPLAIFLLLTFVAPIVALLQRAIENPEVAATLPQTVAVLS 81 LKREL+AA+ RKR AL LIAPLAIFLLL FV PI LL RA++NPE+AA LP TVA LS Sbjct: 16 LKRELKAAEARKRTMALLLIAPLAIFLLLVFVVPIGTLLTRAVQNPEIAAALPNTVAALS 75 Query: 82 KWDRKSALPDQAFSALAEDLARAKEDTTAGNLARRLNIELSGSRSLVMGTARAMPLRDAD 141 WDRK+ D A++ALA D+ + + G LARRLN E+ G RSLV TARAMPL++ D Sbjct: 76 HWDRKTPPADAAYAALAADMTKVADSDAMGALARRLNTEIPGYRSLVAKTARAMPLKNDD 135 Query: 142 GKALSPAAAREAIIALNAQWGQPEVWRVIAQNGSVYSPYYLLASLDLRQNVFGDIEAAAP 201 G AL+PA R +I L+A+WG+ W+ IA+NGS YSP+YLLA+LD +Q+ FG I A P Sbjct: 136 GTALTPAGTRSKLIELDARWGEVAYWQAIAKNGSTYSPFYLLAALDHKQDGFGHIVHADP 195 Query: 202 ESAIYRTIFGRTLWMSAVVTFITLLLAYPLAYWLSTMQERRANLLMILVLIPFWTSILVR 261 + +IY IFGRT + VT LLL YPLAYW+ST+ ERRANL MILVLIPFWTS+LVR Sbjct: 196 DQSIYLAIFGRTFVIGIAVTLFALLLGYPLAYWISTLSERRANLAMILVLIPFWTSVLVR 255 Query: 262 VAAWIVLLQSEGLVNKALMLAGLTQSPLELVFNRVGVYISMTHILLPFMILPLYSVMKSV 321 VAAWIVLLQ+EGL+NKAL+ +GL PL L+FNRVGVYISMTHILLPFMILPLYSVMKS+ Sbjct: 256 VAAWIVLLQNEGLINKALIGSGLLAHPLALLFNRVGVYISMTHILLPFMILPLYSVMKSI 315 Query: 322 PPTYLKAAVSLGSHPFAAFWRVYVPQTYPGIGAGVLLVFIMAGGYYITPALLGGPNEQMV 381 PPTY +AAVSLGSHPFAAFWRVYVPQTYPG+GAG LLVFI+A GYYITPALLGGPN+QMV Sbjct: 316 PPTYQRAAVSLGSHPFAAFWRVYVPQTYPGVGAGALLVFILAIGYYITPALLGGPNDQMV 375 Query: 382 SYFIAYFINTTINWGMACALGALLLAATLVLYGVYRRFAKVDVGI 426 SY++AYF N TINWGMACALG LLLAATLVLY VY RF + +V + Sbjct: 376 SYYVAYFTNVTINWGMACALGGLLLAATLVLYAVYGRFTRTNVSL 420