BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0890.p (277 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774503.1| spermidine/putrescine ABC transporter permea... 430 e-118 ref|YP_004755023.1| spermidine putrescine ABC transporter permea... 378 e-103 ref|ZP_02882177.1| binding-protein-dependent transport systems i... 353 2e-95 ref|YP_003909858.1| binding-protein-dependent transport systems ... 352 3e-95 ref|YP_004231301.1| binding-protein-dependent transport systems ... 350 9e-95 >ref|YP_003774503.1| spermidine/putrescine ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62595.1| ABC-type spermidine/putrescine transport system, permease component II protein [Herbaspirillum seropedicae SmR1] Length = 277 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 270/277 (97%), Positives = 276/277 (99%) Query: 1 MNKPPLFPPYTSLVERAWFFASRGFNLLVLLFLLSPILVMIPLSFSDSSFLMYPIKGFSL 60 MNKPPLFPPYTSLVERAWFFASRGFNLLVLLFL+SPILVMIPLSFSDSSFLMYPIK FSL Sbjct: 1 MNKPPLFPPYTSLVERAWFFASRGFNLLVLLFLVSPILVMIPLSFSDSSFLMYPIKSFSL 60 Query: 61 RWYENLFSSDEWVRAAKNSFIVAPAATVIATVLGTLAAVGLNKSDFRGKGILMAILISPM 120 RWYENLFSSD+WVRAA+NSFIVAPAATVIATVLGTLAAVGLNK+DFRGKGILMAILISPM Sbjct: 61 RWYENLFSSDDWVRAAQNSFIVAPAATVIATVLGTLAAVGLNKADFRGKGILMAILISPM 120 Query: 121 IVPVVVVGVGVYLFFARIGLSDSYLGLILAHAALGAPFVVTTVLATLQGFNHNLVRASLS 180 IVPVVVVGVGVYLFFARIGLSDSYLGLILAHAALGAPFVVTTVLATLQGFNHNLVRASLS Sbjct: 121 IVPVVVVGVGVYLFFARIGLSDSYLGLILAHAALGAPFVVTTVLATLQGFNHNLVRASLS 180 Query: 181 LGASPLRTFFRITLPVIAPGLISGALFAFATSFDEVVLTLFVAGPEQATLPRQMFAGIKD 240 LGASPLRTFFR+TLPVIAPGLISGALFAFATSFDEVVLTLFVAGPEQATLPRQMFAGIKD Sbjct: 181 LGASPLRTFFRVTLPVIAPGLISGALFAFATSFDEVVLTLFVAGPEQATLPRQMFAGIKD 240 Query: 241 NISPTIAALATILILFSTCLLLALEWLRGRNKAAARF 277 NISPTIAALATILI+FSTCLLLALEWLRGRNKAAARF Sbjct: 241 NISPTIAALATILIIFSTCLLLALEWLRGRNKAAARF 277 >ref|YP_004755023.1| spermidine putrescine ABC transporter permease potC [Collimonas fungivorans Ter331] gb|AEK64200.1| Spermidine Putrescine ABC transporter permease component potC [Collimonas fungivorans Ter331] Length = 301 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 235/273 (86%), Positives = 254/273 (93%) Query: 5 PLFPPYTSLVERAWFFASRGFNLLVLLFLLSPILVMIPLSFSDSSFLMYPIKGFSLRWYE 64 P FPPY SL ER WF+ SRGFNLLVLLFLL PILV+IPLSFSDS+FL+YPI GFS+RWY+ Sbjct: 29 PQFPPYISLTERVWFYFSRGFNLLVLLFLLLPILVIIPLSFSDSTFLVYPIHGFSMRWYQ 88 Query: 65 NLFSSDEWVRAAKNSFIVAPAATVIATVLGTLAAVGLNKSDFRGKGILMAILISPMIVPV 124 NL SDEWV AAKNSFIVAP ATV+ATVLGTLAAVGLNK+DF GKG+LMA+LISPM+VPV Sbjct: 89 NLVQSDEWVSAAKNSFIVAPLATVLATVLGTLAAVGLNKADFHGKGLLMAVLISPMVVPV 148 Query: 125 VVVGVGVYLFFARIGLSDSYLGLILAHAALGAPFVVTTVLATLQGFNHNLVRASLSLGAS 184 VVVGVGVYLFFA+IGLSDSY GLILAHAALGAPFVVTTVLATLQGFN NLVRASLSLGA+ Sbjct: 149 VVVGVGVYLFFAQIGLSDSYTGLILAHAALGAPFVVTTVLATLQGFNQNLVRASLSLGAN 208 Query: 185 PLRTFFRITLPVIAPGLISGALFAFATSFDEVVLTLFVAGPEQATLPRQMFAGIKDNISP 244 PL TFFRITLPVIAPGLISGALFAFATSFD+VV+TLFVAGP QATLPRQMF GIK+NISP Sbjct: 209 PLSTFFRITLPVIAPGLISGALFAFATSFDDVVVTLFVAGPGQATLPRQMFTGIKENISP 268 Query: 245 TIAALATILILFSTCLLLALEWLRGRNKAAARF 277 TIAALATILI+FSTCLLL LEW+RGRNKA A+F Sbjct: 269 TIAALATILIVFSTCLLLVLEWIRGRNKALAKF 301 >ref|ZP_02882177.1| binding-protein-dependent transport systems inner membrane component [Burkholderia graminis C4D1M] gb|EDT12422.1| binding-protein-dependent transport systems inner membrane component [Burkholderia graminis C4D1M] Length = 279 Score = 353 bits (905), Expect = 2e-95, Method: Composition-based stats. Identities = 211/271 (77%), Positives = 248/271 (91%) Query: 5 PLFPPYTSLVERAWFFASRGFNLLVLLFLLSPILVMIPLSFSDSSFLMYPIKGFSLRWYE 64 PLF P+TS VERAW+FA R +L LL+L+ P+L ++PLSFS S+FL+YPI G+SLRWY+ Sbjct: 6 PLFAPHTSWVERAWYFALRALAVLTLLYLILPVLAIVPLSFSSSTFLVYPIPGWSLRWYQ 65 Query: 65 NLFSSDEWVRAAKNSFIVAPAATVIATVLGTLAAVGLNKSDFRGKGILMAILISPMIVPV 124 NL +SDEW AAKNSFIVAP+ATV+ATVLGTLAA+GL K++FRGKG+LMAILISPMIVPV Sbjct: 66 NLIASDEWRMAAKNSFIVAPSATVVATVLGTLAAIGLTKANFRGKGLLMAILISPMIVPV 125 Query: 125 VVVGVGVYLFFARIGLSDSYLGLILAHAALGAPFVVTTVLATLQGFNHNLVRASLSLGAS 184 VVVGVG+YLFFA +GL+++Y+GLILAHA+LG PFVVTTV ATLQGFN+NLVRASLSLGA+ Sbjct: 126 VVVGVGMYLFFAPLGLANTYVGLILAHASLGVPFVVTTVAATLQGFNYNLVRASLSLGAN 185 Query: 185 PLRTFFRITLPVIAPGLISGALFAFATSFDEVVLTLFVAGPEQATLPRQMFAGIKDNISP 244 P++TFFRITLPVIAPG+ISGALFAFATSFDEVV+TLF+AG +Q TLPRQMF GI++NISP Sbjct: 186 PVKTFFRITLPVIAPGVISGALFAFATSFDEVVVTLFLAGADQTTLPRQMFTGIRENISP 245 Query: 245 TIAALATILILFSTCLLLALEWLRGRNKAAA 275 TIAALATILI+FSTCLLLALEWLRGRN A A Sbjct: 246 TIAALATILIIFSTCLLLALEWLRGRNAARA 276 >ref|YP_003909858.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1003] gb|ADN60567.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1003] Length = 279 Score = 352 bits (904), Expect = 3e-95, Method: Composition-based stats. Identities = 211/271 (77%), Positives = 248/271 (91%) Query: 5 PLFPPYTSLVERAWFFASRGFNLLVLLFLLSPILVMIPLSFSDSSFLMYPIKGFSLRWYE 64 PLF P+TSLVER W+FA R +L LL+L+ P+L ++PLSFS S+FL+YPI G+SLRWY+ Sbjct: 6 PLFAPHTSLVERVWYFALRALAVLTLLYLILPVLAIVPLSFSSSTFLVYPIPGWSLRWYQ 65 Query: 65 NLFSSDEWVRAAKNSFIVAPAATVIATVLGTLAAVGLNKSDFRGKGILMAILISPMIVPV 124 NL +SDEW AAKNSFIVAP+ATV+ATVLGTLAA+GL K++FRGKG+LMAILISPMIVPV Sbjct: 66 NLIASDEWRMAAKNSFIVAPSATVVATVLGTLAAIGLTKANFRGKGLLMAILISPMIVPV 125 Query: 125 VVVGVGVYLFFARIGLSDSYLGLILAHAALGAPFVVTTVLATLQGFNHNLVRASLSLGAS 184 VVVGVG+YLFFA +GL+++Y+GLILAHA+LG PFVVTTV ATLQGFN+NLVRASLSLGA+ Sbjct: 126 VVVGVGMYLFFAPLGLANTYIGLILAHASLGVPFVVTTVAATLQGFNYNLVRASLSLGAN 185 Query: 185 PLRTFFRITLPVIAPGLISGALFAFATSFDEVVLTLFVAGPEQATLPRQMFAGIKDNISP 244 P++TFFRITLPVIAPG+ISGALFAFATSFDEVV+TLF+AG +Q TLPRQMF GI++NISP Sbjct: 186 PVKTFFRITLPVIAPGVISGALFAFATSFDEVVVTLFLAGADQTTLPRQMFTGIRENISP 245 Query: 245 TIAALATILILFSTCLLLALEWLRGRNKAAA 275 TIAALATILI+FSTCLLLALEWLRGRN A A Sbjct: 246 TIAALATILIVFSTCLLLALEWLRGRNAARA 276 >ref|YP_004231301.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1001] gb|ADX58241.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1001] Length = 279 Score = 350 bits (899), Expect = 9e-95, Method: Composition-based stats. Identities = 211/271 (77%), Positives = 247/271 (91%) Query: 5 PLFPPYTSLVERAWFFASRGFNLLVLLFLLSPILVMIPLSFSDSSFLMYPIKGFSLRWYE 64 PLF P+TSLVER W+FA R +L LL+L+ P+L ++PLSFS S+FL+YPI G+SLRWY+ Sbjct: 6 PLFAPHTSLVERVWYFALRALAVLTLLYLILPVLAIVPLSFSSSTFLVYPIPGWSLRWYQ 65 Query: 65 NLFSSDEWVRAAKNSFIVAPAATVIATVLGTLAAVGLNKSDFRGKGILMAILISPMIVPV 124 NL +SDEW AAKNSFIVAP+ATV+ATVLGTLAA+GL K++FRGKG+LMAILISPMIVPV Sbjct: 66 NLIASDEWRMAAKNSFIVAPSATVVATVLGTLAAIGLTKANFRGKGLLMAILISPMIVPV 125 Query: 125 VVVGVGVYLFFARIGLSDSYLGLILAHAALGAPFVVTTVLATLQGFNHNLVRASLSLGAS 184 VVVGVG+YLFFA +GL+++Y+GLILAHA+LG PFVVTTV ATLQGFN+NLVRASLSLGA+ Sbjct: 126 VVVGVGMYLFFAPLGLANTYIGLILAHASLGVPFVVTTVAATLQGFNYNLVRASLSLGAN 185 Query: 185 PLRTFFRITLPVIAPGLISGALFAFATSFDEVVLTLFVAGPEQATLPRQMFAGIKDNISP 244 P+ TFFRITLPVIAPG+ISGALFAFATSFDEVV+TLF+AG +Q TLPRQMF GI++NISP Sbjct: 186 PVTTFFRITLPVIAPGVISGALFAFATSFDEVVVTLFLAGADQTTLPRQMFTGIRENISP 245 Query: 245 TIAALATILILFSTCLLLALEWLRGRNKAAA 275 TIAALATILI+FSTCLLLALEWLRGRN A A Sbjct: 246 TIAALATILIVFSTCLLLALEWLRGRNAARA 276