BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0889.p (509 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774502.1| NADP-dependent succinate-semialdehyde dehydr... 890 0.0 ref|YP_004755022.1| succinic semialdehyde dehydrogenase [Collimo... 812 0.0 ref|YP_371039.1| succinate semialdehyde dehydrogenase [Burkholde... 759 0.0 ref|YP_001116042.1| succinate semialdehyde dehydrogenase [Burkho... 759 0.0 ref|YP_622873.1| succinic semialdehyde dehydrogenase [Burkholder... 758 0.0 >ref|YP_003774502.1| NADP-dependent succinate-semialdehyde dehydrogenase [Herbaspirillum seropedicae SmR1] gb|ADJ62594.1| NADP-dependent succinate-semialdehyde dehydrogenase protein [Herbaspirillum seropedicae SmR1] Length = 484 Score = 890 bits (2300), Expect = 0.0, Method: Composition-based stats. Identities = 451/482 (93%), Positives = 467/482 (96%) Query: 28 QLKDPSLLRQQAYLNGQWCDADQGGKHEVYNPANGSLLGSVPMMGAAETRRAIEAANAAW 87 QLKDP+LLRQQA++NGQWCDADQG + V+NPANG LLG VP+MGAAETRRAIEAANAAW Sbjct: 3 QLKDPALLRQQAFVNGQWCDADQGERLAVHNPANGELLGHVPLMGAAETRRAIEAANAAW 62 Query: 88 PAWKKKTAKERSVILRRWYELMMANADDLALIMTAEQGKPLAEAKGEIGYAASFIEWFAE 147 PAWKKKTAKERS ILRRWYELM+AN DDLALIMTAEQGKPLAEA+GEIGYAASFIEWFAE Sbjct: 63 PAWKKKTAKERSAILRRWYELMLANTDDLALIMTAEQGKPLAEARGEIGYAASFIEWFAE 122 Query: 148 EGKRTYGDTIPSPSPSNRIVVIKEAIGVCAAITPWNFPAAMITRKAGPALAAGCPMVLKP 207 EGKRTYGDTIPSPSPSNRIVVIKEAIGVCAAITPWNFPAAMITRKAGPALAAGCPMVLKP Sbjct: 123 EGKRTYGDTIPSPSPSNRIVVIKEAIGVCAAITPWNFPAAMITRKAGPALAAGCPMVLKP 182 Query: 208 AEATPFSALALAVLAERAGIPAGVFSVVTGSAKDIGGEMTSNPIVRKISFTGSTGVGKLL 267 AEATPFSALALAVLAERAGIPAGVFSVVTG+ K IGGEMTSNPIVRKISFTGSTGVGKLL Sbjct: 183 AEATPFSALALAVLAERAGIPAGVFSVVTGTPKGIGGEMTSNPIVRKISFTGSTGVGKLL 242 Query: 268 MEQSASSIKKLSLELGGNAPFIVFDDADLDAAVEGAIASKYRNAGQTCVCANRLYVQDGV 327 M+QSASSIKKLSLELGGNAPFIVFDDADLDAAVEGAIASKYRNAGQTCVCANR+YVQDGV Sbjct: 243 MQQSASSIKKLSLELGGNAPFIVFDDADLDAAVEGAIASKYRNAGQTCVCANRIYVQDGV 302 Query: 328 YDAFAAKLVEAVKKLKVGDGMENGVTQGPLINEQAVKKVEQHIADAVSKGARVLLGGKRH 387 YDAFAAKLVEAVKK KVG G E GVTQGPLINEQAV+KVEQH+ADAV+KGARVLLGGKRH Sbjct: 303 YDAFAAKLVEAVKKFKVGQGTEEGVTQGPLINEQAVQKVEQHVADAVAKGARVLLGGKRH 362 Query: 388 PLGHSFFEPTVLADVTPAMQVAREETFGPMAPLFRFKTDEEAVALANDTEFGLASYFYSR 447 LGHSFFEPTVLADVTPAMQVAREETFGPMAPLFRFKTDEE +ALANDTEFGLASYFYSR Sbjct: 363 ALGHSFFEPTVLADVTPAMQVAREETFGPMAPLFRFKTDEEVLALANDTEFGLASYFYSR 422 Query: 448 DIGRIWRVAEGLESGMVGINTGLISNEVAPFGGVKQSGLGREGSHFGIDDYLVVKYLCMG 507 DIGRIWRVAEGLESGMVGINTGLISNEVAPFGGVKQSGLGREGSH+GIDDYLVVKYLCMG Sbjct: 423 DIGRIWRVAEGLESGMVGINTGLISNEVAPFGGVKQSGLGREGSHYGIDDYLVVKYLCMG 482 Query: 508 GI 509 GI Sbjct: 483 GI 484 >ref|YP_004755022.1| succinic semialdehyde dehydrogenase [Collimonas fungivorans Ter331] gb|AEK64199.1| succinic semialdehyde dehydrogenase [Collimonas fungivorans Ter331] Length = 498 Score = 812 bits (2098), Expect = 0.0, Method: Composition-based stats. Identities = 408/490 (83%), Positives = 445/490 (90%) Query: 20 LRRPDMLQQLKDPSLLRQQAYLNGQWCDADQGGKHEVYNPANGSLLGSVPMMGAAETRRA 79 + R + QLKDPSL RQQAY+NG+WC AD G H V NPA G +GSVP+MGAAETRRA Sbjct: 9 VHRSQPMMQLKDPSLFRQQAYVNGEWCGADSGATHAVTNPATGETIGSVPLMGAAETRRA 68 Query: 80 IEAANAAWPAWKKKTAKERSVILRRWYELMMANADDLALIMTAEQGKPLAEAKGEIGYAA 139 I AA+ AW W++KTAKERS++LR+W +LM+AN DDLALIMT EQGKPLAEAKGEI YAA Sbjct: 69 IAAADQAWRQWRRKTAKERSIVLRKWNDLMLANQDDLALIMTVEQGKPLAEAKGEIAYAA 128 Query: 140 SFIEWFAEEGKRTYGDTIPSPSPSNRIVVIKEAIGVCAAITPWNFPAAMITRKAGPALAA 199 SFIEWFAEEGKR GDTIPSPSP +RIVV+KE IGVCAAITPWNFPAAMITRKAGPALAA Sbjct: 129 SFIEWFAEEGKRAGGDTIPSPSPGSRIVVVKEPIGVCAAITPWNFPAAMITRKAGPALAA 188 Query: 200 GCPMVLKPAEATPFSALALAVLAERAGIPAGVFSVVTGSAKDIGGEMTSNPIVRKISFTG 259 GC MVLKPAE+TPFSALALAVLAERAGIPAGVFSVVTGSA++IG EMTSNP+VRK++FTG Sbjct: 189 GCTMVLKPAESTPFSALALAVLAERAGIPAGVFSVVTGSAREIGAEMTSNPVVRKLTFTG 248 Query: 260 STGVGKLLMEQSASSIKKLSLELGGNAPFIVFDDADLDAAVEGAIASKYRNAGQTCVCAN 319 STGVG+LLMEQ A++IKKLSLELGGNAPFIVFDDADLDAAVEGA+ASKYRNAGQTCVCAN Sbjct: 249 STGVGRLLMEQCAATIKKLSLELGGNAPFIVFDDADLDAAVEGAMASKYRNAGQTCVCAN 308 Query: 320 RLYVQDGVYDAFAAKLVEAVKKLKVGDGMENGVTQGPLINEQAVKKVEQHIADAVSKGAR 379 RLYVQDG+YDAFA KLV AV KLKVGDG + GVTQGPLI+++AV KVEQHIADAVSKGAR Sbjct: 309 RLYVQDGIYDAFAEKLVAAVAKLKVGDGQQEGVTQGPLIDQKAVAKVEQHIADAVSKGAR 368 Query: 380 VLLGGKRHPLGHSFFEPTVLADVTPAMQVAREETFGPMAPLFRFKTDEEAVALANDTEFG 439 VL GGKRH LG SFFEPTVLADVT M VAREETFGPMAPLFRFKTD+E +ALANDTEFG Sbjct: 369 VLAGGKRHALGQSFFEPTVLADVTADMMVAREETFGPMAPLFRFKTDDEVLALANDTEFG 428 Query: 440 LASYFYSRDIGRIWRVAEGLESGMVGINTGLISNEVAPFGGVKQSGLGREGSHFGIDDYL 499 LASYFYSRDIGRIWR+AEGLESGMVGINTGLISNEVAPFGGVKQSGLGREGS +GI+DY Sbjct: 429 LASYFYSRDIGRIWRIAEGLESGMVGINTGLISNEVAPFGGVKQSGLGREGSKYGIEDYQ 488 Query: 500 VVKYLCMGGI 509 V+KYLCMGGI Sbjct: 489 VIKYLCMGGI 498 >ref|YP_371039.1| succinate semialdehyde dehydrogenase [Burkholderia sp. 383] gb|ABB10395.1| succinate semialdehyde dehydrogenase [Burkholderia sp. 383] Length = 489 Score = 759 bits (1960), Expect = 0.0, Method: Composition-based stats. Identities = 376/479 (78%), Positives = 422/479 (88%) Query: 29 LKDPSLLRQQAYLNGQWCDADQGGKHEVYNPANGSLLGSVPMMGAAETRRAIEAANAAWP 88 LKDPSL RQQAY+NG+W A G EV NPA G LLG+VP MG AETR AIEAANAAWP Sbjct: 10 LKDPSLFRQQAYVNGEWQGATNGETFEVRNPATGGLLGTVPAMGTAETRHAIEAANAAWP 69 Query: 89 AWKKKTAKERSVILRRWYELMMANADDLALIMTAEQGKPLAEAKGEIGYAASFIEWFAEE 148 AW+KKTAKER+V+LR+W++LMM +ADDLALI+T EQGK LAEAKGEIGYAASF+EWFAEE Sbjct: 70 AWRKKTAKERAVVLRKWHDLMMEHADDLALILTTEQGKSLAEAKGEIGYAASFLEWFAEE 129 Query: 149 GKRTYGDTIPSPSPSNRIVVIKEAIGVCAAITPWNFPAAMITRKAGPALAAGCPMVLKPA 208 GKR YGDTIP+P+ RIVV KEAIGVCAAITPWNFPAAMITRK GPALAAGCP+V+KPA Sbjct: 130 GKRVYGDTIPTPASDKRIVVTKEAIGVCAAITPWNFPAAMITRKVGPALAAGCPIVVKPA 189 Query: 209 EATPFSALALAVLAERAGIPAGVFSVVTGSAKDIGGEMTSNPIVRKISFTGSTGVGKLLM 268 EATPFSALA+AVLAERAG+PAGVFSVVTG K IGGEMTSNPIVRK+SFTGST VG+LLM Sbjct: 190 EATPFSALAMAVLAERAGVPAGVFSVVTGDPKAIGGEMTSNPIVRKLSFTGSTPVGRLLM 249 Query: 269 EQSASSIKKLSLELGGNAPFIVFDDADLDAAVEGAIASKYRNAGQTCVCANRLYVQDGVY 328 Q A+++KK+SLELGGNAPFIVFDDADLDAAV+GAIASKYRN+GQTCVC NR YV + VY Sbjct: 250 SQCAATVKKVSLELGGNAPFIVFDDADLDAAVQGAIASKYRNSGQTCVCTNRFYVHEAVY 309 Query: 329 DAFAAKLVEAVKKLKVGDGMENGVTQGPLINEQAVKKVEQHIADAVSKGARVLLGGKRHP 388 D FA KL AV +LKVG G E GVTQGPLINE AV KVE HI DA++KGA V+ GGKRH Sbjct: 310 DQFAQKLAAAVGQLKVGRGTEPGVTQGPLINEAAVLKVEAHIEDALAKGATVVTGGKRHA 369 Query: 389 LGHSFFEPTVLADVTPAMQVAREETFGPMAPLFRFKTDEEAVALANDTEFGLASYFYSRD 448 LGH FFEPTVL VTPAM+VA+EETFGP+APLF+F +D+E + LANDTEFGLA+YFYSRD Sbjct: 370 LGHGFFEPTVLTGVTPAMKVAKEETFGPLAPLFKFGSDDEVIRLANDTEFGLAAYFYSRD 429 Query: 449 IGRIWRVAEGLESGMVGINTGLISNEVAPFGGVKQSGLGREGSHFGIDDYLVVKYLCMG 507 IGR+W+VAE LE GMVG+NTGLISNEVAPFGGVKQSGLGREGSH+GIDDY+V+KYLC+ Sbjct: 430 IGRVWKVAEALEYGMVGVNTGLISNEVAPFGGVKQSGLGREGSHYGIDDYVVIKYLCLA 488 >ref|YP_001116042.1| succinate semialdehyde dehydrogenase [Burkholderia vietnamiensis G4] gb|ABO56577.1| succinate semialdehyde dehydrogenase [Burkholderia vietnamiensis G4] Length = 487 Score = 759 bits (1959), Expect = 0.0, Method: Composition-based stats. Identities = 378/479 (78%), Positives = 425/479 (88%) Query: 29 LKDPSLLRQQAYLNGQWCDADQGGKHEVYNPANGSLLGSVPMMGAAETRRAIEAANAAWP 88 LKDPSLLRQQAY+NG+W A G EV NPA G LLG+VP MGAAETR+AI+AANAAWP Sbjct: 8 LKDPSLLRQQAYINGEWQSAANGESFEVRNPATGGLLGTVPAMGAAETRQAIDAANAAWP 67 Query: 89 AWKKKTAKERSVILRRWYELMMANADDLALIMTAEQGKPLAEAKGEIGYAASFIEWFAEE 148 AW+KKTAKER+ ILR+W++LMM NADDLALI+T EQGK LAEAKGEIGYAASF+EWFAEE Sbjct: 68 AWRKKTAKERAAILRKWHDLMMENADDLALILTTEQGKSLAEAKGEIGYAASFLEWFAEE 127 Query: 149 GKRTYGDTIPSPSPSNRIVVIKEAIGVCAAITPWNFPAAMITRKAGPALAAGCPMVLKPA 208 GKR YGDTIP+P+ RIVV KEAIGVCAAITPWNFPAAMITRK GPALAAGCP+V+KPA Sbjct: 128 GKRVYGDTIPTPASDKRIVVTKEAIGVCAAITPWNFPAAMITRKVGPALAAGCPIVVKPA 187 Query: 209 EATPFSALALAVLAERAGIPAGVFSVVTGSAKDIGGEMTSNPIVRKISFTGSTGVGKLLM 268 EATPFSALA+AVLAERAG+PAGVFSVVTG K IGGE+TSNPIVRK+SFTGST VG+LLM Sbjct: 188 EATPFSALAMAVLAERAGVPAGVFSVVTGDPKAIGGELTSNPIVRKLSFTGSTPVGRLLM 247 Query: 269 EQSASSIKKLSLELGGNAPFIVFDDADLDAAVEGAIASKYRNAGQTCVCANRLYVQDGVY 328 Q A+++KK+SLELGGNAPFIVFDDADLDAAV+GAIASKYRN+GQTCVC NR YV + VY Sbjct: 248 SQCAATVKKVSLELGGNAPFIVFDDADLDAAVQGAIASKYRNSGQTCVCTNRFYVHEAVY 307 Query: 329 DAFAAKLVEAVKKLKVGDGMENGVTQGPLINEQAVKKVEQHIADAVSKGARVLLGGKRHP 388 DAFA KL AV +LKVG G E GVTQGPLINE AV KVE HI DA++KGA V+ GGKRH Sbjct: 308 DAFAQKLAAAVGQLKVGRGTEPGVTQGPLINEAAVLKVEAHIEDALAKGATVVTGGKRHA 367 Query: 389 LGHSFFEPTVLADVTPAMQVAREETFGPMAPLFRFKTDEEAVALANDTEFGLASYFYSRD 448 LGH FFEPTVL VTPAM+VA+EETFGP+APLF+F +D+E + LANDTEFGLA+YFYSRD Sbjct: 368 LGHGFFEPTVLTGVTPAMKVAKEETFGPLAPLFKFGSDDEVIRLANDTEFGLAAYFYSRD 427 Query: 449 IGRIWRVAEGLESGMVGINTGLISNEVAPFGGVKQSGLGREGSHFGIDDYLVVKYLCMG 507 IGR+W+VAE LE GMVG+NTGLISNEVAPFGGVKQSGLGREGSH+GIDDY+V+KYLC+ Sbjct: 428 IGRVWKVAEALEYGMVGVNTGLISNEVAPFGGVKQSGLGREGSHYGIDDYVVIKYLCLA 486 >ref|YP_622873.1| succinic semialdehyde dehydrogenase [Burkholderia cenocepacia AU 1054] ref|YP_838988.1| succinic semialdehyde dehydrogenase [Burkholderia cenocepacia HI2424] ref|YP_001778528.1| succinic semialdehyde dehydrogenase [Burkholderia cenocepacia MC0-3] gb|ABF77900.1| succinate semialdehyde dehydrogenase [Burkholderia cenocepacia AU 1054] gb|ABK12095.1| succinate semialdehyde dehydrogenase [Burkholderia cenocepacia HI2424] gb|ACA94038.1| succinic semialdehyde dehydrogenase [Burkholderia cenocepacia MC0-3] Length = 489 Score = 758 bits (1958), Expect = 0.0, Method: Composition-based stats. Identities = 376/479 (78%), Positives = 422/479 (88%) Query: 29 LKDPSLLRQQAYLNGQWCDADQGGKHEVYNPANGSLLGSVPMMGAAETRRAIEAANAAWP 88 LKDPSL RQQAY+NG+W A G EV NPA G LLG+VP MG AETR AI+AANAAWP Sbjct: 10 LKDPSLFRQQAYVNGEWQGATNGETFEVRNPATGGLLGTVPAMGTAETRHAIDAANAAWP 69 Query: 89 AWKKKTAKERSVILRRWYELMMANADDLALIMTAEQGKPLAEAKGEIGYAASFIEWFAEE 148 AW+KKTAKER+VILR+W++LMM NADDLALI+T EQGK LAEAKGEIGYAASF+EWFAEE Sbjct: 70 AWRKKTAKERAVILRKWHDLMMDNADDLALILTTEQGKSLAEAKGEIGYAASFLEWFAEE 129 Query: 149 GKRTYGDTIPSPSPSNRIVVIKEAIGVCAAITPWNFPAAMITRKAGPALAAGCPMVLKPA 208 GKR YGDTIP+P+ RIVV KEAIGVCAAITPWNFPAAMITRK GPALAAGCP+V+KPA Sbjct: 130 GKRVYGDTIPTPASDKRIVVTKEAIGVCAAITPWNFPAAMITRKVGPALAAGCPIVVKPA 189 Query: 209 EATPFSALALAVLAERAGIPAGVFSVVTGSAKDIGGEMTSNPIVRKISFTGSTGVGKLLM 268 EATPFSALA+AVLAERAG+PAGVFSVVTG K IGGE+TSNPIVRK+SFTGST VG+LLM Sbjct: 190 EATPFSALAMAVLAERAGVPAGVFSVVTGDPKAIGGELTSNPIVRKLSFTGSTPVGRLLM 249 Query: 269 EQSASSIKKLSLELGGNAPFIVFDDADLDAAVEGAIASKYRNAGQTCVCANRLYVQDGVY 328 Q A+++KK+SLELGGNAPFIVFDDADLDAAV+GAIASKYRN+GQTCVC NR YV + VY Sbjct: 250 AQCAATVKKVSLELGGNAPFIVFDDADLDAAVQGAIASKYRNSGQTCVCTNRFYVHEAVY 309 Query: 329 DAFAAKLVEAVKKLKVGDGMENGVTQGPLINEQAVKKVEQHIADAVSKGARVLLGGKRHP 388 D FA KL AV +LKVG G E GVTQGPLINE AV KVE HI DA++KGA V+ GGKRH Sbjct: 310 DQFAQKLAAAVGQLKVGRGTEPGVTQGPLINEAAVLKVEAHIEDALAKGATVVTGGKRHA 369 Query: 389 LGHSFFEPTVLADVTPAMQVAREETFGPMAPLFRFKTDEEAVALANDTEFGLASYFYSRD 448 LGH FFEPTVL VTPAM+VA+EETFGP+APLF+F +D+E + LANDTEFGLA+YFYSRD Sbjct: 370 LGHGFFEPTVLTGVTPAMKVAKEETFGPLAPLFKFGSDDEVIRLANDTEFGLAAYFYSRD 429 Query: 449 IGRIWRVAEGLESGMVGINTGLISNEVAPFGGVKQSGLGREGSHFGIDDYLVVKYLCMG 507 IGR+W+VAE LE GMVG+NTGLISNEVAPFGGVKQSGLGREGSH+GIDDY+V+KYLC+ Sbjct: 430 IGRVWKVAEALEYGMVGVNTGLISNEVAPFGGVKQSGLGREGSHYGIDDYVVIKYLCLA 488