BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0888.p         (101 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774501.1| hypothetical protein Hsero_1076 [Herbaspiril...   165   2e-39
ref|YP_298466.1| PilT protein, N-terminal [Ralstonia eutropha JM...   143   9e-33
ref|ZP_07395880.1| PIN domain-containing addiction module [Candi...   137   8e-31
ref|YP_004687097.1| protein PilT [Cupriavidus necator N-1] >gi|3...   136   1e-30
gb|EGY29819.1| hypothetical protein Rin_00001980 [Candidatus Reg...   135   2e-30

>ref|YP_003774501.1| hypothetical protein Hsero_1076 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62593.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 131

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MAGGDIIISAISAWEIAMLVEREKLVLSMEVERWMATVAEIEAVRMVPVDVEVSVKAVAL 60
           MAGGDIIISAISAWEIAMLVEREKLVLSMEVERWMATVAEIEAVRMVPVDVEVSVKAVAL
Sbjct: 31  MAGGDIIISAISAWEIAMLVEREKLVLSMEVERWMATVAEIEAVRMVPVDVEVSVKAVAL 90

Query: 61  PGEFHKDPADRMIVATARKFSIPLVTKDEKIRAYPHVKTIW 101
           PGEFHKDPADRMIVATARKFSIPLVTKDEKIRAYPHVKTIW
Sbjct: 91  PGEFHKDPADRMIVATARKFSIPLVTKDEKIRAYPHVKTIW 131


>ref|YP_298466.1| PilT protein, N-terminal [Ralstonia eutropha JMP134]
 gb|AAZ63622.1| PilT protein, N-terminal [Ralstonia eutropha JMP134]
          Length = 136

 Score =  143 bits (360), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 75/98 (76%), Positives = 89/98 (90%)

Query: 4   GDIIISAISAWEIAMLVEREKLVLSMEVERWMATVAEIEAVRMVPVDVEVSVKAVALPGE 63
           G I++SAISAWEIAMLVEREKLVLSM+VE W+ TVA+IEA+   PVDV+VS+K+V LPGE
Sbjct: 39  GQIVVSAISAWEIAMLVEREKLVLSMDVESWLDTVAQIEAITFYPVDVDVSIKSVQLPGE 98

Query: 64  FHKDPADRMIVATARKFSIPLVTKDEKIRAYPHVKTIW 101
           FHKDPADRMIVATARK ++PL+T+DEKIRAY HV+TIW
Sbjct: 99  FHKDPADRMIVATARKLAVPLITRDEKIRAYEHVRTIW 136


>ref|ZP_07395880.1| PIN domain-containing addiction module [Candidatus Regiella
           insecticola LSR1]
 gb|EFL91427.1| PIN domain-containing addiction module [Candidatus Regiella
           insecticola LSR1]
          Length = 136

 Score =  137 bits (344), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 75/100 (75%), Positives = 91/100 (91%)

Query: 2   AGGDIIISAISAWEIAMLVEREKLVLSMEVERWMATVAEIEAVRMVPVDVEVSVKAVALP 61
           A G+IIIS+ISAWEIAMLV+RE+L+LSM+V+ W+ATV++I+AVR VPVD EV+ K+V LP
Sbjct: 37  AKGEIIISSISAWEIAMLVQRERLLLSMDVDSWLATVSQIDAVRFVPVDTEVATKSVELP 96

Query: 62  GEFHKDPADRMIVATARKFSIPLVTKDEKIRAYPHVKTIW 101
           GEFHKDPADRMIVATARK ++PLVTKDEKIR Y HV+TIW
Sbjct: 97  GEFHKDPADRMIVATARKLAVPLVTKDEKIRTYAHVRTIW 136


>ref|YP_004687097.1| protein PilT [Cupriavidus necator N-1]
 gb|AEI78616.1| protein PilT [Cupriavidus necator N-1]
          Length = 131

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/98 (72%), Positives = 89/98 (90%)

Query: 4   GDIIISAISAWEIAMLVEREKLVLSMEVERWMATVAEIEAVRMVPVDVEVSVKAVALPGE 63
           G II+SAISAWE+AMLVERE+LVL+M+V+ W+AT+A+I+A+  VPVD E++ K+V LPG+
Sbjct: 34  GQIIVSAISAWEVAMLVERERLVLAMDVDTWLATIADIDAISFVPVDTEIATKSVHLPGD 93

Query: 64  FHKDPADRMIVATARKFSIPLVTKDEKIRAYPHVKTIW 101
           FHKDPADRMIVATARK ++PLVT+DEKIRAY HVKTIW
Sbjct: 94  FHKDPADRMIVATARKLAVPLVTRDEKIRAYSHVKTIW 131


>gb|EGY29819.1| hypothetical protein Rin_00001980 [Candidatus Regiella insecticola
           R5.15]
          Length = 131

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 75/100 (75%), Positives = 91/100 (91%)

Query: 2   AGGDIIISAISAWEIAMLVEREKLVLSMEVERWMATVAEIEAVRMVPVDVEVSVKAVALP 61
           A G+IIIS+ISAWEIAMLV+RE+L+LSM+V+ W+ATV++I+AVR VPVD EV+ K+V LP
Sbjct: 32  AKGEIIISSISAWEIAMLVQRERLLLSMDVDSWLATVSQIDAVRFVPVDTEVATKSVELP 91

Query: 62  GEFHKDPADRMIVATARKFSIPLVTKDEKIRAYPHVKTIW 101
           GEFHKDPADRMIVATARK ++PLVTKDEKIR Y HV+TIW
Sbjct: 92  GEFHKDPADRMIVATARKLAVPLVTKDEKIRTYAHVRTIW 131