BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0887.p         (77 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_298467.1| hypothetical protein Reut_B4270 [Ralstonia eutr...   111   4e-23
ref|YP_004687098.1| hypothetical protein CNE_1c33120 [Cupriavidu...   106   1e-21
ref|ZP_08275919.1| hypothetical protein IMCC9480_1135 [Oxalobact...   102   2e-20
ref|ZP_07395879.1| hypothetical protein REG_1656 [Candidatus Reg...    99   2e-19
ref|YP_727829.1| hypothetical protein H16_A3392 [Ralstonia eutro...    96   2e-18

>ref|YP_298467.1| hypothetical protein Reut_B4270 [Ralstonia eutropha JMP134]
 gb|AAZ63623.1| conserved hypothetical protein [Ralstonia eutropha JMP134]
          Length = 85

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 56/77 (72%), Positives = 65/77 (84%)

Query: 1  MQTNQVSKTEFKAKALEYFRQVEASGETLVVTDHGKPAVEVRPFREAQRAPLAILAGSVL 60
          M+  QVSKTEFKAKALEYFRQVE+SGE ++VTDHGKP +E+RPFR   R PL +LAG+V+
Sbjct: 9  MRGTQVSKTEFKAKALEYFRQVESSGEHVIVTDHGKPTLEIRPFRTLDRDPLDVLAGTVV 68

Query: 61 RYVDTTEPVDVEWEAAQ 77
          RY D TEPVDVEWEA Q
Sbjct: 69 RYDDPTEPVDVEWEAGQ 85


>ref|YP_004687098.1| hypothetical protein CNE_1c33120 [Cupriavidus necator N-1]
 gb|AEI78617.1| hypothetical protein CNE_1c33120 [Cupriavidus necator N-1]
          Length = 77

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/77 (68%), Positives = 64/77 (83%)

Query: 1  MQTNQVSKTEFKAKALEYFRQVEASGETLVVTDHGKPAVEVRPFREAQRAPLAILAGSVL 60
          M  NQ+SKTEFKA+ALEYFRQ+EASG+ ++VTDHGKP +EVRP+R  +R PL +L G+VL
Sbjct: 1  MPGNQISKTEFKARALEYFRQIEASGDPVIVTDHGKPTLEVRPYRGLERDPLQVLRGTVL 60

Query: 61 RYVDTTEPVDVEWEAAQ 77
          RY   TEPVDVEWEA Q
Sbjct: 61 RYDAPTEPVDVEWEAGQ 77


>ref|ZP_08275919.1| hypothetical protein IMCC9480_1135 [Oxalobacteraceae bacterium
          IMCC9480]
 gb|EGF30608.1| hypothetical protein IMCC9480_1135 [Oxalobacteraceae bacterium
          IMCC9480]
          Length = 84

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/78 (62%), Positives = 66/78 (84%), Gaps = 2/78 (2%)

Query: 1  MQTNQVSKTEFKAKALEYFRQVEASGETLVVTDHGKPAVEVRPFR--EAQRAPLAILAGS 58
          M+  QVSK+EFK+KALEYFRQVE+SG++++VTDHG+PA+EVRP+R  + +R PL +L GS
Sbjct: 7  MENKQVSKSEFKSKALEYFRQVESSGQSVIVTDHGRPALEVRPYRNIDQKRNPLDVLRGS 66

Query: 59 VLRYVDTTEPVDVEWEAA 76
          V+ YVD T P+DV WE+A
Sbjct: 67 VVSYVDPTSPIDVNWESA 84


>ref|ZP_07395879.1| hypothetical protein REG_1656 [Candidatus Regiella insecticola
          LSR1]
 gb|EFL91426.1| hypothetical protein REG_1656 [Candidatus Regiella insecticola
          LSR1]
 gb|EGY29818.1| hypothetical protein Rin_00001970 [Candidatus Regiella
          insecticola R5.15]
          Length = 78

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/78 (62%), Positives = 63/78 (80%), Gaps = 1/78 (1%)

Query: 1  MQTNQVSKTEFKAKALEYFRQVEASGETLVVTDHGKPAVEVRPFREAQRAPLAILAGSVL 60
          M  NQVSK+EFK+KALEYFRQ+EASG +L+VTDHGKPA+E+RP++   R PL +L GSV+
Sbjct: 1  MNVNQVSKSEFKSKALEYFRQIEASGASLIVTDHGKPALEIRPYQNIVRNPLEVLRGSVV 60

Query: 61 RYVDTTEPVDV-EWEAAQ 77
           YV+ T P+   +WEAAQ
Sbjct: 61 SYVNPTAPISADDWEAAQ 78


>ref|YP_727829.1| hypothetical protein H16_A3392 [Ralstonia eutropha H16]
 emb|CAJ94461.1| Hypothetical protein H16_A3392 [Ralstonia eutropha H16]
          Length = 91

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/72 (66%), Positives = 60/72 (83%)

Query: 6  VSKTEFKAKALEYFRQVEASGETLVVTDHGKPAVEVRPFREAQRAPLAILAGSVLRYVDT 65
          +SKTEFKA+ALEYFRQ+EASGE ++VTDHGKP +EVRP+R  +R PL +L G+V+RY   
Sbjct: 20 ISKTEFKARALEYFRQIEASGEPVIVTDHGKPTLEVRPYRGLERDPLQVLRGTVVRYDAP 79

Query: 66 TEPVDVEWEAAQ 77
          TEPVDVE EA +
Sbjct: 80 TEPVDVEGEAER 91