BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0886.p (336 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774500.1| LysR family transcription regulator protein ... 508 e-142 ref|YP_004475208.1| LysR family transcriptional regulator [Pseud... 441 e-122 ref|YP_004280611.1| LysR family transcriptional regulator [Agrob... 417 e-114 ref|YP_003451941.1| transcriptional regulator [Azospirillum sp. ... 410 e-112 ref|YP_001768295.1| LysR family transcriptional regulator [Methy... 386 e-105 >ref|YP_003774500.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62592.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 296 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 283/296 (95%), Positives = 290/296 (97%) Query: 41 MDRWLAMRIFVQVAETASFAKAARQMQLSAPVVTRTVAGLEELVGARLLVRTTRSVKTTE 100 MDRWLAMRIFVQVAE ASFAKAARQMQLSAP VTRTVA LEELVGARLLVRTTRSVKTTE Sbjct: 1 MDRWLAMRIFVQVAEAASFAKAARQMQLSAPAVTRTVATLEELVGARLLVRTTRSVKTTE 60 Query: 101 AGARYLEDCRRILAEIAEAEAAAAGHYDQPSGTLSVTAALLFGQLHVLPIVTEYLDLYPG 160 AGARYLEDCRRILAEIAEAEAAAAGHYDQPSGTLSVTAALLFGQ+HVLPIVTEYLDLYPG Sbjct: 61 AGARYLEDCRRILAEIAEAEAAAAGHYDQPSGTLSVTAALLFGQMHVLPIVTEYLDLYPG 120 Query: 161 MRARTFFVDRPVNIVEEGMDVAVRIGHLPDSGFTAIQVGSVSRVICASPDYLRQHGTPAS 220 MRARTFF+DRPVNIVEEGMDVAVRIGHLPDSGFTAIQVGSV RVICA+PDYLR+HG P S Sbjct: 121 MRARTFFIDRPVNIVEEGMDVAVRIGHLPDSGFTAIQVGSVRRVICAAPDYLRRHGVPTS 180 Query: 221 PADLKQHRIVTSTSAWASPEWRFADGQRVVVDAALQTNTNEAAISTARQGWGLTRVLAYQ 280 PADLKQHRIVTSTSAWASPEWRFADGQRV+V+AALQTNTNEAAI+TARQGWGLTRVLAYQ Sbjct: 181 PADLKQHRIVTSTSAWASPEWRFADGQRVLVEAALQTNTNEAAIATARQGWGLTRVLAYQ 240 Query: 281 VAADLQAGRLQRVMSEFEEPPLPIHVLYPEGRRSPAKVRAFIDLAVCRLREHAAFY 336 VAADLQAGRLQRVMSEFEEPPLPIHVLYPEGRRSPAKVRAFIDLAVCRLREHAAFY Sbjct: 241 VAADLQAGRLQRVMSEFEEPPLPIHVLYPEGRRSPAKVRAFIDLAVCRLREHAAFY 296 >ref|YP_004475208.1| LysR family transcriptional regulator [Pseudomonas fulva 12-X] gb|AEF23114.1| transcriptional regulator, LysR family [Pseudomonas fulva 12-X] Length = 296 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 224/295 (75%), Positives = 257/295 (87%) Query: 41 MDRWLAMRIFVQVAETASFAKAARQMQLSAPVVTRTVAGLEELVGARLLVRTTRSVKTTE 100 MDRW AMR+FV+VAET SFA ARQM +SAP VTR VAGLE+L+GARLLVRTTRSVKTT+ Sbjct: 1 MDRWQAMRVFVKVAETGSFASTARQMHMSAPAVTRIVAGLEDLIGARLLVRTTRSVKTTD 60 Query: 101 AGARYLEDCRRILAEIAEAEAAAAGHYDQPSGTLSVTAALLFGQLHVLPIVTEYLDLYPG 160 AG+RYL+DCRRILA+IAEAE AAAGHY +PSGTL+VTAA +FG LHVLP+V +YLD YPG Sbjct: 61 AGSRYLQDCRRILADIAEAELAAAGHYAEPSGTLAVTAASMFGHLHVLPLVLDYLDAYPG 120 Query: 161 MRARTFFVDRPVNIVEEGMDVAVRIGHLPDSGFTAIQVGSVSRVICASPDYLRQHGTPAS 220 M ARTFFVDRPVNI++EG+DVAVRIGHL DSGFTAIQVGSV RVICA+P YL ++G P + Sbjct: 121 MHARTFFVDRPVNILDEGIDVAVRIGHLADSGFTAIQVGSVRRVICAAPCYLEKYGVPTT 180 Query: 221 PADLKQHRIVTSTSAWASPEWRFADGQRVVVDAALQTNTNEAAISTARQGWGLTRVLAYQ 280 PADLK HRIV S SAWASPEWRFA+GQRV+VD LQ+NTNE+AI+TAR GWGLTRV +YQ Sbjct: 181 PADLKHHRIVVSQSAWASPEWRFAEGQRVLVDPVLQSNTNESAIATARAGWGLTRVASYQ 240 Query: 281 VAADLQAGRLQRVMSEFEEPPLPIHVLYPEGRRSPAKVRAFIDLAVCRLREHAAF 335 VA +Q G LQ V+ FEEPPLPIHVLYPEGR++PAKVRAF+DLAV RLR + F Sbjct: 241 VAPAVQEGALQIVLEAFEEPPLPIHVLYPEGRQAPAKVRAFVDLAVARLRGNPLF 295 >ref|YP_004280611.1| LysR family transcriptional regulator [Agrobacterium sp. H13-3] gb|ADY68233.1| transcriptional regulator, LysR family [Agrobacterium sp. H13-3] Length = 296 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 208/292 (71%), Positives = 251/292 (85%) Query: 41 MDRWLAMRIFVQVAETASFAKAARQMQLSAPVVTRTVAGLEELVGARLLVRTTRSVKTTE 100 MDRW AMRIFV+VAET SFA ARQM +SAP VTR+VA LE+++GARL VRTTRSVK TE Sbjct: 1 MDRWQAMRIFVKVAETESFADTARQMHMSAPAVTRSVAALEDIIGARLFVRTTRSVKMTE 60 Query: 101 AGARYLEDCRRILAEIAEAEAAAAGHYDQPSGTLSVTAALLFGQLHVLPIVTEYLDLYPG 160 AGARY EDCR+IL++IAEAEAAA G Y P+GTLSVTA+++FGQ++VLP+VT +LD +P Sbjct: 61 AGARYFEDCRKILSDIAEAEAAAGGSYATPTGTLSVTASVMFGQMYVLPVVTGFLDAFPT 120 Query: 161 MRARTFFVDRPVNIVEEGMDVAVRIGHLPDSGFTAIQVGSVSRVICASPDYLRQHGTPAS 220 M+ART F+DRPVNIV+EG+DVAVRIGHLPDSG +AI+VGSV RV+C SP Y +HG P + Sbjct: 121 MKARTLFIDRPVNIVDEGIDVAVRIGHLPDSGLSAIKVGSVRRVVCGSPAYFDRHGIPTT 180 Query: 221 PADLKQHRIVTSTSAWASPEWRFADGQRVVVDAALQTNTNEAAISTARQGWGLTRVLAYQ 280 P+DL+ HRI STSAWASPEWRF+D RV +DAALQ NTNEAAI++AR+GWGLTRVL YQ Sbjct: 181 PSDLRDHRIAASTSAWASPEWRFSDDFRVTIDAALQCNTNEAAITSAREGWGLTRVLNYQ 240 Query: 281 VAADLQAGRLQRVMSEFEEPPLPIHVLYPEGRRSPAKVRAFIDLAVCRLREH 332 + DL AG LQ V+SEFEEPPLPIH+++PEGR +PAKVRAF+D+AV RLRE+ Sbjct: 241 IGPDLMAGDLQIVLSEFEEPPLPIHIMHPEGRNAPAKVRAFVDMAVARLREN 292 >ref|YP_003451941.1| transcriptional regulator [Azospirillum sp. B510] dbj|BAI75397.1| transcriptional regulator [Azospirillum sp. B510] Length = 296 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 213/290 (73%), Positives = 243/290 (83%) Query: 41 MDRWLAMRIFVQVAETASFAKAARQMQLSAPVVTRTVAGLEELVGARLLVRTTRSVKTTE 100 MDRW AMRIF +VAET SFA+ AR M LSAP VTR VA LE+++GARL VRTTRSVK TE Sbjct: 1 MDRWQAMRIFAKVAETGSFAETARLMHLSAPAVTRAVASLEDVIGARLFVRTTRSVKLTE 60 Query: 101 AGARYLEDCRRILAEIAEAEAAAAGHYDQPSGTLSVTAALLFGQLHVLPIVTEYLDLYPG 160 AG RY EDCRRILA+IAEAEAAA G Y P+GTL++TA+ LFGQ+HVLPIVTE+LD++P Sbjct: 61 AGIRYFEDCRRILADIAEAEAAAGGSYANPAGTLAITASALFGQMHVLPIVTEFLDIHPA 120 Query: 161 MRARTFFVDRPVNIVEEGMDVAVRIGHLPDSGFTAIQVGSVSRVICASPDYLRQHGTPAS 220 MRART F+DRPVNIVEEG+DVAVRIGHLPDSGFTA++VG+V RVIC SP Y +HG P + Sbjct: 121 MRARTLFIDRPVNIVEEGVDVAVRIGHLPDSGFTAVKVGTVRRVICGSPAYFERHGAPLT 180 Query: 221 PADLKQHRIVTSTSAWASPEWRFADGQRVVVDAALQTNTNEAAISTARQGWGLTRVLAYQ 280 PADL+ HRI STSAWASPEWRFA QRV +D LQ NTNEAAI+TAR+GWGLTRVL YQ Sbjct: 181 PADLRNHRIAASTSAWASPEWRFAGDQRVTIDLVLQCNTNEAAIATAREGWGLTRVLHYQ 240 Query: 281 VAADLQAGRLQRVMSEFEEPPLPIHVLYPEGRRSPAKVRAFIDLAVCRLR 330 + L G L+ V+SE EEPPLPIHVLYPEGR +PAKVRAF+DLAV RLR Sbjct: 241 IGPALLDGSLRIVLSEHEEPPLPIHVLYPEGRHAPAKVRAFVDLAVARLR 290 >ref|YP_001768295.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46] gb|ACA15861.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46] Length = 296 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 207/290 (71%), Positives = 242/290 (83%) Query: 41 MDRWLAMRIFVQVAETASFAKAARQMQLSAPVVTRTVAGLEELVGARLLVRTTRSVKTTE 100 MDRW AMRI V+VAETASFA+AAR + +S P VTR VAGLEE++GARL VRTTRSVK TE Sbjct: 1 MDRWQAMRIVVKVAETASFAEAARHLHMSPPAVTRAVAGLEEVIGARLFVRTTRSVKLTE 60 Query: 101 AGARYLEDCRRILAEIAEAEAAAAGHYDQPSGTLSVTAALLFGQLHVLPIVTEYLDLYPG 160 AG RY+EDCRRILA++AEAEAAAAG Y PSGTL+VTA++LFGQ+HVLPIVT+YLD YP Sbjct: 61 AGGRYVEDCRRILADLAEAEAAAAGSYATPSGTLTVTASVLFGQMHVLPIVTDYLDAYPT 120 Query: 161 MRARTFFVDRPVNIVEEGMDVAVRIGHLPDSGFTAIQVGSVSRVICASPDYLRQHGTPAS 220 M ART FVDR VNIVEEG+DVA+RIGHLPDSGFTAI+VG++ RV+C SP Y +HG PA+ Sbjct: 121 MAARTLFVDRLVNIVEEGVDVAIRIGHLPDSGFTAIRVGAMRRVVCGSPAYFERHGVPAT 180 Query: 221 PADLKQHRIVTSTSAWASPEWRFADGQRVVVDAALQTNTNEAAISTARQGWGLTRVLAYQ 280 PADLK HRI ST AWASPEWRF +RV V +ALQ+N+NEA IS A GWGLTR L YQ Sbjct: 181 PADLKDHRIAVSTGAWASPEWRFGRDERVTVHSALQSNSNEAPISAALSGWGLTRALHYQ 240 Query: 281 VAADLQAGRLQRVMSEFEEPPLPIHVLYPEGRRSPAKVRAFIDLAVCRLR 330 V L+ GRL+ V++++EEPPLPIHVL+P GRR+PAKVR F+D AV RLR Sbjct: 241 VGPALRDGRLRIVLADYEEPPLPIHVLHPGGRRAPAKVRTFVDFAVARLR 290