BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0884.p (581 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004280615.1| pyridoxamine 5'-phosphate oxidase-related FM... 546 e-153 ref|YP_004475209.1| Nitric oxide dioxygenase [Pseudomonas fulva ... 537 e-150 ref|YP_001757334.1| pyridoxamine 5'-phosphate oxidase-like FMN-b... 500 e-139 ref|YP_003774499.1| pyridoxamine 5'-phosphate oxidase-like, FMN-... 474 e-131 ref|YP_001755987.1| oxidoreductase FAD/NAD(P)-binding subunit [M... 466 e-129 >ref|YP_004280615.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding protein [Agrobacterium sp. H13-3] gb|ADY68237.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding protein [Agrobacterium sp. H13-3] Length = 686 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 267/402 (66%), Positives = 318/402 (79%) Query: 90 KSPVWHAGEKQLQAQLGVADKMESVGQRVIRDFMPEQHRDFYGQLPFIVVGSVDPSGDAW 149 K P WH GEK +Q ++GVA++ME VGQRV+RDFMP+QHRDFY QLPFIV+GSVD DAW Sbjct: 7 KLPTWHEGEKFIQEKVGVAERMEVVGQRVVRDFMPDQHRDFYAQLPFIVLGSVDGHDDAW 66 Query: 150 ATFLEGRPGFLASPSPTRLDMHARPAAEDPAAAGMSAGAPVGLLGIEMHTRRRNRMNGVL 209 ATF+EGRPGF++SP+PT LD+ + DPA+ GM+ G P+GLLGIEMHTRRRNRMNG + Sbjct: 67 ATFVEGRPGFMSSPTPTTLDIRSTLEPSDPASEGMADGKPIGLLGIEMHTRRRNRMNGFV 126 Query: 210 APLADGWRVQVDQSFGNCPRYIQLRDYSFAREPAEAHTGQAETLSTLDAPALALIAGADT 269 + A+G+R+ VDQSFGNCPRYIQLRD+ F R P + Q E LS LD A + I AD Sbjct: 127 STAANGYRIDVDQSFGNCPRYIQLRDFQFERAPGQPSQNQREDLSELDDLARSTIKTADA 186 Query: 270 FFVATYADQEGRRQVDVSHRGGKPGFVRVDEAGVLTVPDFNGNLFFSTLGNIVLNGHAGL 329 FFVA+Y D+E RRQVDVSHRGG GFVRV + VLT+PDF+GNLFFSTLGNI+LN AGL Sbjct: 187 FFVASYVDREDRRQVDVSHRGGNAGFVRVGDDDVLTIPDFDGNLFFSTLGNILLNKKAGL 246 Query: 330 LFVDYASGDVLQMTGQAEVILDSPEIAAFEGAERLWTFRPQRIVRRRAALALRWAFQEHA 389 LFVD+A+GDVLQMTG+A+VIL+SPEIAAF+GAERLWTFRP RIVRR ALALRWAFQ+ Sbjct: 247 LFVDFATGDVLQMTGEADVILESPEIAAFQGAERLWTFRPTRIVRRPNALALRWAFQKDG 306 Query: 390 FSSYALMTGDWQQAAERLRAQALAGQWRSLKVARIVQESETIRSFHLVADDGAGLLPALP 449 +S +LMTG+W QAA+R+RA L+ WRS+ V RIV+ES TIRS HL DGAGLLP Sbjct: 307 WSPNSLMTGNWAQAADRMRATGLSDTWRSMTVTRIVEESTTIRSIHLQPSDGAGLLPHAA 366 Query: 450 GQHLPIRVRTEAGAAPLIRTYTLSSAPHGGHYRISVKREGVV 491 GQHLPIR+ P++RTYTLS AP G YRISVKR+G+V Sbjct: 367 GQHLPIRLVLPGSERPVVRTYTLSVAPSDGIYRISVKRDGLV 408 >ref|YP_004475209.1| Nitric oxide dioxygenase [Pseudomonas fulva 12-X] gb|AEF23115.1| Nitric oxide dioxygenase [Pseudomonas fulva 12-X] Length = 688 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 276/421 (65%), Positives = 334/421 (79%), Gaps = 3/421 (0%) Query: 85 MSASPKSPV-WHAGEKQLQAQLGVADKMESVGQRVIRDFMPEQHRDFYGQLPFIVVGSVD 143 M+ K+P WH+GE +Q +LGVA++M++VG+RV+RDFMP+QHRDFY QLPFIV+GSVD Sbjct: 1 MTDLAKTPAPWHSGETFIQEKLGVAERMDAVGKRVVRDFMPDQHRDFYAQLPFIVLGSVD 60 Query: 144 PSGDAWATFLEGRPGFLASPSPTRLDMHARPAAEDPAAAGMSAGAPVGLLGIEMHTRRRN 203 GDAWA LEG+ GF+ASP+PT LD+ ARP A+DP A GM GA +GLLGIE+H+RRRN Sbjct: 61 GQGDAWAGLLEGQAGFMASPTPTTLDIAARPQADDPVAQGMGEGAALGLLGIELHSRRRN 120 Query: 204 RMNGVLAPLADGWRVQVDQSFGNCPRYIQLRDYSFAREPAEAHTGQAETLSTLDAPALAL 263 RMNGV+ G RV V+QSFGNCPRYIQ RD++FAR+PA E L LDA A A+ Sbjct: 121 RMNGVVVAGGKGLRVAVEQSFGNCPRYIQQRDFTFARDPAAPFAATVEQLPALDAAARAV 180 Query: 264 IAGADTFFVATYADQEGRRQVDVSHRGGKPGFVRVDEAGVLTVPDFNGNLFFSTLGNIVL 323 + GADTFFVATYAD +G+RQVDVSHRGG GFVR+D G LT+PDFNGNLFFSTLGNIVL Sbjct: 181 VEGADTFFVATYADVDGQRQVDVSHRGGNTGFVRIDADGTLTIPDFNGNLFFSTLGNIVL 240 Query: 324 NGHAGLLFVDYASGDVLQMTGQAEVILDSPEIAAFEGAERLWTFRPQRIVRRRAALALRW 383 NG AGLLFVD+A+GDVLQ++G AEVI +SPEI AF+GAERLWTFRP+RIVRR AA+ALRW Sbjct: 241 NGKAGLLFVDFATGDVLQLSGDAEVIFESPEIGAFQGAERLWTFRPRRIVRRPAAMALRW 300 Query: 384 AFQEHAFSSYALMTGDWQQAAERLRAQALAGQWRSLKVARIVQESETIRSFHLVADDGAG 443 A +E ++ +L+TG+WQQAA++LRA A QWR ++VARIV+ES +IRS HL DGAG Sbjct: 301 AMREDGWADSSLLTGNWQQAADQLRAAQYATQWRPMRVARIVEESRSIRSLHLEPVDGAG 360 Query: 444 LLPALPGQHLPIRVRTEAGAAPLIRTYTLSSAPHGGHYRISVKREGVVLKNKGLHARYRH 503 +LP L GQHLPIR++ AG PLIRTYTLS AP G YRISVKREG V ++ +H R Sbjct: 361 VLPHLAGQHLPIRLQVAAGEKPLIRTYTLSVAPSDGIYRISVKREGRV--SQFIHDGLRE 418 Query: 504 G 504 G Sbjct: 419 G 419 >ref|YP_001757334.1| pyridoxamine 5'-phosphate oxidase-like FMN-binding protein [Methylobacterium radiotolerans JCM 2831] gb|ACB26651.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding [Methylobacterium radiotolerans JCM 2831] Length = 687 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 261/416 (62%), Positives = 315/416 (75%), Gaps = 3/416 (0%) Query: 90 KSPVWHAGEKQLQAQLGVADKMESVGQRVIRDFMPEQHRDFYGQLPFIVVGSVDPSGDAW 149 K WH GE +Q Q+GVA++ME VG+RV+RD+MP+QHRDFY Q+PFIV GSVD GDAW Sbjct: 9 KLSTWHPGETAIQQQVGVAERMEDVGRRVVRDYMPDQHRDFYEQIPFIVAGSVDGRGDAW 68 Query: 150 ATFLEGRPGFLASPSPTRLDMHARPAAEDPAAAGMSAGAPVGLLGIEMHTRRRNRMNGVL 209 AT + G PGF+ASP+PT LD+ R DPA+ GM AG +GLLGIE+HTRRRNR+NG++ Sbjct: 69 ATLVAGGPGFIASPTPTTLDIAVRLDPSDPASQGMRAGDAIGLLGIELHTRRRNRVNGLI 128 Query: 210 APLADG-WRVQVDQSFGNCPRYIQLRDYSFAREPAEAHTGQAETLSTLDAPALALIAGAD 268 ADG V VDQSFGNCP+YIQLRD +F R+P + G E + LDA A A+I AD Sbjct: 129 RAAADGILHVAVDQSFGNCPQYIQLRDVAFVRDPGKPFAGAVEESAVLDADARAMIEAAD 188 Query: 269 TFFVATYADQEGRRQVDVSHRGGKPGFVRVDEAGVLTVPDFNGNLFFSTLGNIVLNGHAG 328 TFFVA+YA+++ RRQVDVSHRGGK GFVRV G LTVPDF GNLFF+TLGNI+LNG AG Sbjct: 189 TFFVASYAERDDRRQVDVSHRGGKAGFVRVAADGTLTVPDFAGNLFFATLGNILLNGKAG 248 Query: 329 LLFVDYASGDVLQMTGQAEVILDSPEIAAFEGAERLWTFRPQRIVRRRAALALRWAFQEH 388 L+F D+ +GD+LQMTG AEVIL SPEIAAF+GAERLWTF+P+R+VRRR AL LRW F++ Sbjct: 249 LVFADFETGDLLQMTGDAEVILSSPEIAAFQGAERLWTFKPRRVVRRRGALPLRWTFRKD 308 Query: 389 AFSSYALMTGDWQQAAERLRAQALAGQWRSLKVARIVQESETIRSFHLVADDGAGLLPAL 448 +S +LMTGDW++A +RLRA LA +WR L V +IV ES TIRSFHL DGAGL+P Sbjct: 309 GWSPNSLMTGDWREAGDRLRASDLATRWRPLTVTKIVDESRTIRSFHLQPADGAGLIPHQ 368 Query: 449 PGQHLPIRVRTEAGAAPLIRTYTLSSAPHGGHYRISVKREGVVLKNKGLHARYRHG 504 GQHLPIRV P+IRTYTLS AP YRISVKR+G+V ++ LH R G Sbjct: 369 AGQHLPIRVTLPGADKPIIRTYTLSVAPSDAVYRISVKRDGMV--SRHLHDTLRVG 422 >ref|YP_003774499.1| pyridoxamine 5'-phosphate oxidase-like, FMN-binding protein [Herbaspirillum seropedicae SmR1] gb|ADJ62591.1| pyridoxamine 5'-phosphate oxidase-like, FMN-binding protein [Herbaspirillum seropedicae SmR1] Length = 321 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 257/320 (80%), Positives = 277/320 (86%) Query: 85 MSASPKSPVWHAGEKQLQAQLGVADKMESVGQRVIRDFMPEQHRDFYGQLPFIVVGSVDP 144 MS S VWHAGE+ LQAQLGVADKM+++GQRV+R MP+QHRDFY QLPFIV+GSVDP Sbjct: 1 MSTSSSPSVWHAGEQMLQAQLGVADKMQALGQRVVRTVMPDQHRDFYRQLPFIVLGSVDP 60 Query: 145 SGDAWATFLEGRPGFLASPSPTRLDMHARPAAEDPAAAGMSAGAPVGLLGIEMHTRRRNR 204 GDAWAT LEG+PGFL SPSP +LDMHA PA DPAAAGM+AGAPVGLLGIEMHTRRRNR Sbjct: 61 VGDAWATLLEGQPGFLTSPSPVQLDMHAHPAPADPAAAGMAAGAPVGLLGIEMHTRRRNR 120 Query: 205 MNGVLAPLADGWRVQVDQSFGNCPRYIQLRDYSFAREPAEAHTGQAETLSTLDAPALALI 264 MNGVLA L GWRVQV+QSFGNCPRYIQLRDYSFAR+PA+ H GQ E L+TLDA A LI Sbjct: 121 MNGVLAELEQGWRVQVEQSFGNCPRYIQLRDYSFARDPAQDHPGQPELLATLDASARELI 180 Query: 265 AGADTFFVATYADQEGRRQVDVSHRGGKPGFVRVDEAGVLTVPDFNGNLFFSTLGNIVLN 324 AD FFVATYAD + RRQVDVSHRGGK GFVRVD GVLTVPDFNGNLFFSTLGNIVLN Sbjct: 181 GMADAFFVATYADVDERRQVDVSHRGGKAGFVRVDAEGVLTVPDFNGNLFFSTLGNIVLN 240 Query: 325 GHAGLLFVDYASGDVLQMTGQAEVILDSPEIAAFEGAERLWTFRPQRIVRRRAALALRWA 384 G AGLLFVDYA+GDVLQM+GQAE+ILDSPEIAAFEGAERLWTFRPQRIVRRRAALALRW Sbjct: 241 GRAGLLFVDYANGDVLQMSGQAELILDSPEIAAFEGAERLWTFRPQRIVRRRAALALRWR 300 Query: 385 FQEHAFSSYALMTGDWQQAA 404 FQE +S Y L TG W +AA Sbjct: 301 FQEQGWSPYVLATGQWPRAA 320 >ref|YP_001755987.1| oxidoreductase FAD/NAD(P)-binding subunit [Methylobacterium radiotolerans JCM 2831] gb|ACB25304.1| oxidoreductase FAD/NAD(P)-binding domain protein [Methylobacterium radiotolerans JCM 2831] Length = 687 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 263/414 (63%), Positives = 309/414 (74%), Gaps = 3/414 (0%) Query: 92 PVWHAGEKQLQAQLGVADKMESVGQRVIRDFMPEQHRDFYGQLPFIVVGSVDPSGDAWAT 151 P WHAGE +Q +G AD+M +GQRV+RDFMP+QHR FY Q+PFIV+GSVD GDAWAT Sbjct: 11 PTWHAGETSIQESVGAADRMAVIGQRVVRDFMPDQHRAFYAQIPFIVLGSVDRQGDAWAT 70 Query: 152 FLEGRPGFLASPSPTRLDMHARPAAEDPAAAGMSAGAPVGLLGIEMHTRRRNRMNGVLAP 211 L GRPGF+ SPS T LD+ ARP DPA+ G AG +GLLGIE+ +RRRNR+NG++ Sbjct: 71 LLAGRPGFITSPSATTLDIAARPDPADPASEGTRAGDAIGLLGIELSSRRRNRVNGLVRS 130 Query: 212 LADG-WRVQVDQSFGNCPRYIQLRDYSFAREPAEAHTGQAETLSTLDAPALALIAGADTF 270 G VDQSFGNCP+YIQLRD +F EP AE + LDA A ALIA ADTF Sbjct: 131 TDGGVLHFDVDQSFGNCPQYIQLRDMTFVGEPGVPVPVSAEESAELDASARALIAAADTF 190 Query: 271 FVATYADQEGRRQVDVSHRGGKPGFVRVDEAGVLTVPDFNGNLFFSTLGNIVLNGHAGLL 330 FVA+YAD+EGRRQVDVSHRGGK GFVRV G LT+PDF GNLFF+TLGNI+LNG AGL+ Sbjct: 191 FVASYADREGRRQVDVSHRGGKAGFVRVAADGTLTIPDFAGNLFFATLGNILLNGRAGLV 250 Query: 331 FVDYASGDVLQMTGQAEVILDSPEIAAFEGAERLWTFRPQRIVRRRAALALRWAFQEHAF 390 F D+ +GD+LQ+TG A VILDSPEIAAF+GAERLWTFRP+R++RRR AL LRW F+ + Sbjct: 251 FTDFETGDLLQLTGDAAVILDSPEIAAFQGAERLWTFRPRRVIRRRGALPLRWTFRADGW 310 Query: 391 SSYALMTGDWQQAAERLRAQALAGQWRSLKVARIVQESETIRSFHLVADDGAGLLPALPG 450 S ALMTGDW +AA+R+RA A +WR +VA+IV ES TIRSFHL DDGAG LP G Sbjct: 311 SPNALMTGDWAEAADRVRATGRATRWRPFRVAKIVDESRTIRSFHLAPDDGAGQLPHRAG 370 Query: 451 QHLPIRVRTEAGAAPLIRTYTLSSAPHGGHYRISVKREGVVLKNKGLHARYRHG 504 QHLPIRV AP+IRTYTLS AP YRISVKR+G V ++ LH R R G Sbjct: 371 QHLPIRVTLPGAEAPVIRTYTLSVAPSDPTYRISVKRDGAV--SQHLHDRLRVG 422