BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0882.p (431 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774497.1| arabinose efflux permease [Herbaspirillum se... 556 e-156 ref|YP_001353559.1| major facilitator superfamily drug efflux an... 450 e-124 ref|NP_106730.1| hypothetical protein mll6183 [Mesorhizobium lot... 349 7e-94 ref|YP_001312907.1| major facilitator transporter [Sinorhizobium... 347 2e-93 ref|NP_104492.1| hypothetical protein mll3374 [Mesorhizobium lot... 345 6e-93 >ref|YP_003774497.1| arabinose efflux permease [Herbaspirillum seropedicae SmR1] gb|ADJ62589.1| arabinose efflux permease protein [Herbaspirillum seropedicae SmR1] Length = 422 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 398/422 (94%), Positives = 411/422 (97%) Query: 10 MSNPGIIEAPLTETAAPASASAAPAHKAAQDLPANWSGIASLALGVFSLVTAEFLPASLL 69 MS PGIIEAPLTETAAPA+A A AHKA Q+ PANWSGIASLALGVFSLVTAEFLPASLL Sbjct: 1 MSTPGIIEAPLTETAAPATAPAPTAHKAGQEAPANWSGIASLALGVFSLVTAEFLPASLL 60 Query: 70 TAIATDLHVSDGAAGQAVTATAIVGAVAAPSIPLLTRNIDRKRVVLMLTLLLLVSNLMAV 129 TAIA+DLHVSDGAAGQAVTATAIVGAVAAPSIPLLTRNIDRKRVVLML+LLLLVSN++AV Sbjct: 61 TAIASDLHVSDGAAGQAVTATAIVGAVAAPSIPLLTRNIDRKRVVLMLSLLLLVSNILAV 120 Query: 130 LAPNLPILLVARVLLGVALGGFWSMAAALAMRLVPDHLFARAMSLILTGVSVATVCAAPI 189 APNLP+LLVARVLLGVALGGFWSMAAALAMRLVPDHLFARAMSLILTGVSVATVCAAPI Sbjct: 121 TAPNLPVLLVARVLLGVALGGFWSMAAALAMRLVPDHLFARAMSLILTGVSVATVCAAPI 180 Query: 190 GAYMGNLWGWRSAFIAAGVVSLVAFAIQWIAIPRLPPKDHPSLKVLAELLGRKDVRVALM 249 GAYMGNLWGWRSAF+AAGVVSLVA AIQWIAIPRLPPKDHPSLKVLAELLGRKDVRVAL+ Sbjct: 181 GAYMGNLWGWRSAFVAAGVVSLVAIAIQWIAIPRLPPKDHPSLKVLAELLGRKDVRVALL 240 Query: 250 AVLLVVSGHFAGFTYIRPLMEQITHMSVATISAVLLGYGVGGFFGNFAGGFIAERSERYA 309 AVLLVVSGHFAGFTYIRPLMEQITHMSV TISAVLLGYGVGGFFGNFAGGFIAERSERYA Sbjct: 241 AVLLVVSGHFAGFTYIRPLMEQITHMSVTTISAVLLGYGVGGFFGNFAGGFIAERSERYA 300 Query: 310 IVSGGTLIALLAASLWVAGSSPVVAAIAITLWGFAFGAFPVGFQTWIVRAAPDHAEGAGG 369 IVSGG LIALLAASLWVAGSSPVVAA+AITLWGFAFGAFPVGFQTWIVRAAPDHAEGAGG Sbjct: 301 IVSGGALIALLAASLWVAGSSPVVAAVAITLWGFAFGAFPVGFQTWIVRAAPDHAEGAGG 360 Query: 370 LMVAAFQVAIASGAIGGGVLVDHVGALGGPIFAVIAISLGTLLTLRYGPRGGGTPVAGNA 429 L+VAAFQVAIASGAIGGGVLVDHVGALGGPIFAV+AI+LGTLLTLRYGPRGGG PVAGNA Sbjct: 361 LLVAAFQVAIASGAIGGGVLVDHVGALGGPIFAVVAITLGTLLTLRYGPRGGGAPVAGNA 420 Query: 430 HF 431 HF Sbjct: 421 HF 422 >ref|YP_001353559.1| major facilitator superfamily drug efflux antiporter [Janthinobacterium sp. Marseille] gb|ABR89688.1| drug efflux antiporter of the MFS superfamily, DHA1 family [Janthinobacterium sp. Marseille] Length = 408 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 313/399 (78%), Positives = 348/399 (87%) Query: 22 ETAAPASASAAPAHKAAQDLPANWSGIASLALGVFSLVTAEFLPASLLTAIATDLHVSDG 81 E P A A ANW+GI SLALGVF LVTAEFLPASLLTA+A DL VSDG Sbjct: 7 ECPNPPFAGNLSEATAGAAESANWAGITSLALGVFGLVTAEFLPASLLTAMANDLGVSDG 66 Query: 82 AAGQAVTATAIVGAVAAPSIPLLTRNIDRKRVVLMLTLLLLVSNLMAVLAPNLPILLVAR 141 AAGQAVTATA+VGA AA IP+LTRN DRKRV+L LT+LL++SN++A A NLP+LLV+R Sbjct: 67 AAGQAVTATALVGAGAALMIPVLTRNFDRKRVILTLTILLVLSNVLAATAENLPVLLVSR 126 Query: 142 VLLGVALGGFWSMAAALAMRLVPDHLFARAMSLILTGVSVATVCAAPIGAYMGNLWGWRS 201 VLLG+ALGGFWSMAAALAMRLVPD+LFARAMS ILTGVSVATV AAPIGAYMG+LWGWRS Sbjct: 127 VLLGIALGGFWSMAAALAMRLVPDNLFARAMSFILTGVSVATVGAAPIGAYMGDLWGWRS 186 Query: 202 AFIAAGVVSLVAFAIQWIAIPRLPPKDHPSLKVLAELLGRKDVRVALMAVLLVVSGHFAG 261 AFIAAG+VS++ +Q+ AIP LPPKD+PSLK+L ELL R +VRVAL AVLLV+SGHFAG Sbjct: 187 AFIAAGIVSIITLVVQFFAIPSLPPKDNPSLKILFELLRRTNVRVALFAVLLVISGHFAG 246 Query: 262 FTYIRPLMEQITHMSVATISAVLLGYGVGGFFGNFAGGFIAERSERYAIVSGGTLIALLA 321 FTYIRPLME ITH+SV+ ISAVLLGYG+GGFFGNFAGGFIAERSERYA+V GGTLIALLA Sbjct: 247 FTYIRPLMEHITHLSVSAISAVLLGYGIGGFFGNFAGGFIAERSERYAVVFGGTLIALLA 306 Query: 322 ASLWVAGSSPVVAAIAITLWGFAFGAFPVGFQTWIVRAAPDHAEGAGGLMVAAFQVAIAS 381 A+LW+AGSS VAAIAI LWGFAFGAFPVGFQTWIVRAAPD AE AGGLMVAAFQ+AIAS Sbjct: 307 ATLWIAGSSATVAAIAIALWGFAFGAFPVGFQTWIVRAAPDQAEAAGGLMVAAFQIAIAS 366 Query: 382 GAIGGGVLVDHVGALGGPIFAVIAISLGTLLTLRYGPRG 420 GAIGGG+LVDHVGALGGPIFA +A++LGTLLTL YGPR Sbjct: 367 GAIGGGILVDHVGALGGPIFATVALTLGTLLTLHYGPRA 405 >ref|NP_106730.1| hypothetical protein mll6183 [Mesorhizobium loti MAFF303099] dbj|BAB52516.1| mll6183 [Mesorhizobium loti MAFF303099] Length = 475 Score = 349 bits (895), Expect = 7e-94, Method: Composition-based stats. Identities = 210/376 (55%), Positives = 276/376 (73%), Gaps = 1/376 (0%) Query: 45 WSGIASLALGVFSLVTAEFLPASLLTAIATDLHVSDGAAGQAVTATAIVGAVAAPSIPLL 104 W + SLALG F LVTAEFLPAS+LT +A DL +++GA GQA+T TAIVGA++AP++ ++ Sbjct: 94 WGAVISLALGTFGLVTAEFLPASVLTPLAHDLSITEGAVGQALTTTAIVGAISAPTMAVI 153 Query: 105 TRNIDRKRVVLMLTLLLLVSNLMAVLAPNLPILLVARVLLGVALGGFWSMAAALAMRLVP 164 TR +DR+ V+ +TLLL++SN+++ +A +LP+LL ARV+LG+ALGGFWS++AALAMRLVP Sbjct: 154 TRPLDRRIVIWAMTLLLILSNVLSAVAGSLPVLLAARVVLGIALGGFWSISAALAMRLVP 213 Query: 165 DHLFARAMSLILTGVSVATVCAAPIGAYMGNLWGWRSAFIAAGVVSLVAFAIQWIAIPRL 224 HL RAMS+ILTGV+ ATVCAAPIGAY+G++WGWR+AF+ A VV V +Q I IPRL Sbjct: 214 SHLLRRAMSIILTGVTCATVCAAPIGAYVGDIWGWRTAFMIAAVVGAVTLVVQLITIPRL 273 Query: 225 PPKDHPSLKVLAELLGRKDVRVALMAVLLVVSGHFAGFTYIRPLMEQITHMSVATISAVL 284 PP S + L ++ ++VA++ VLLV SGHFAGFTYIR +E+ + + TIS VL Sbjct: 274 PPIGVASFRSLLDVAKNPMIKVAMLVVLLVASGHFAGFTYIRAFLEKFPALDIETISLVL 333 Query: 285 LGYGVGGFFGNFAGGFIAERSERYAIVSGGTLIALLAASLWVAGSSPVVAAIAITLWGFA 344 L +G+GGFFGN AGGF+AE S + A IA+ SL G+S AIA+T+WGFA Sbjct: 334 LVFGIGGFFGNLAGGFLAEHSLKAAAALPPLFIAMATVSLLTLGASAWATAIAVTVWGFA 393 Query: 345 FGAFPVGFQTWIV-RAAPDHAEGAGGLMVAAFQVAIASGAIGGGVLVDHVGALGGPIFAV 403 FGA PVG QTW+V AAP+ AE AGGLM A FQVAIA+GAI GG+L+D+ G ++ Sbjct: 394 FGAVPVGLQTWMVLHAAPEQAESAGGLMAATFQVAIAAGAIFGGLLMDNAGVASSLAYSA 453 Query: 404 IAISLGTLLTLRYGPR 419 +A LG L GP+ Sbjct: 454 VASFLGALTVFLLGPK 469 >ref|YP_001312907.1| major facilitator transporter [Sinorhizobium medicae WSM419] gb|ABR62974.1| major facilitator superfamily MFS_1 [Sinorhizobium medicae WSM419] Length = 401 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 220/386 (56%), Positives = 277/386 (71%), Gaps = 2/386 (0%) Query: 20 LTETAAPASASAAPAHKAAQDLPANWSGIASLALGVFSLVTAEFLPASLLTAIATDLHVS 79 +T+TA A+ P + + + WSG+ SLALGVF LVTAEFLP S+LT +A DL +S Sbjct: 1 MTDTATTLDAALIP--ETNERIDPAWSGVGSLALGVFGLVTAEFLPVSILTPMAADLGIS 58 Query: 80 DGAAGQAVTATAIVGAVAAPSIPLLTRNIDRKRVVLMLTLLLLVSNLMAVLAPNLPILLV 139 G AGQAVTATA+VGAVA ++ + TR DR+ V+ TL L+VS+L+A A NL +LL Sbjct: 59 TGTAGQAVTATAVVGAVAGLTVAIATRRFDRRLVLWGFTLALIVSSLIAAFATNLAMLLT 118 Query: 140 ARVLLGVALGGFWSMAAALAMRLVPDHLFARAMSLILTGVSVATVCAAPIGAYMGNLWGW 199 ARV+LGV LGGFWSM AA+A+RLVP L RAMS++ TGVSVATVCAAPIGAY+G+LWGW Sbjct: 119 ARVILGVGLGGFWSMMAAIALRLVPMSLVPRAMSIVFTGVSVATVCAAPIGAYIGDLWGW 178 Query: 200 RSAFIAAGVVSLVAFAIQWIAIPRLPPKDHPSLKVLAELLGRKDVRVALMAVLLVVSGHF 259 R+AF+ A V V +Q ++IPRLPP+ PSLK+L +LLGR +R+ ++ VLL VSGHF Sbjct: 179 RAAFLMAAAVGAVTLIVQMVSIPRLPPQSAPSLKLLFDLLGRPSIRIGIITVLLFVSGHF 238 Query: 260 AGFTYIRPLMEQITHMSVATISAVLLGYGVGGFFGNFAGGFIAERSERYAIVSGGTLIAL 319 AGFTY+RP +E++ + IS +LL YG+GGFFGN AGG I ERS A+ LIA Sbjct: 239 AGFTYVRPFLEKVPEFGIEAISLILLAYGIGGFFGNIAGGLIIERSITAAVGLATLLIAA 298 Query: 320 LAASLWVAGSSPVVAAIAITLWGFAFGAFPVGFQTWIVRAAPDHAEGAGGLMVAAFQVAI 379 +A L GS VV+A A+T+WGFAFGA PV QTW+VRAAP+HAE GGL+VA FQV I Sbjct: 299 MAFLLVTFGSLDVVSATAVTIWGFAFGALPVAVQTWMVRAAPEHAESTGGLIVATFQVGI 358 Query: 380 ASGAIGGGVLVDHVGALGGPIFAVIA 405 ASGA+ GG+ VD G LG + A Sbjct: 359 ASGAVLGGLFVDAFGPLGAITYCAAA 384 >ref|NP_104492.1| hypothetical protein mll3374 [Mesorhizobium loti MAFF303099] dbj|BAB50278.1| mll3374 [Mesorhizobium loti MAFF303099] Length = 404 Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats. Identities = 227/387 (58%), Positives = 290/387 (74%), Gaps = 1/387 (0%) Query: 33 PAHKAAQDLPANWSGIASLALGVFSLVTAEFLPASLLTAIATDLHVSDGAAGQAVTATAI 92 PA + PA W + SLALGVF LVTAEFLPASLLT +A DL V++G AGQAVTATAI Sbjct: 16 PADTDERTEPA-WGAVVSLALGVFGLVTAEFLPASLLTPMARDLGVTEGVAGQAVTATAI 74 Query: 93 VGAVAAPSIPLLTRNIDRKRVVLMLTLLLLVSNLMAVLAPNLPILLVARVLLGVALGGFW 152 VGA+AAP++ ++TR +DR+ V+ MLT L++SNL+A A +LP+LL+ARV+LGVALGGFW Sbjct: 75 VGAIAAPTMAIITRRMDRRLVMWMLTSFLILSNLLATFAASLPMLLLARVVLGVALGGFW 134 Query: 153 SMAAALAMRLVPDHLFARAMSLILTGVSVATVCAAPIGAYMGNLWGWRSAFIAAGVVSLV 212 +M+AA+A+RLVP L RAMS+ILTGVS+ATV AAP+GAY+G++WGWR+AF+ A +V + Sbjct: 135 AMSAAMALRLVPMRLMPRAMSIILTGVSLATVTAAPLGAYVGDIWGWRTAFMIATIVGAL 194 Query: 213 AFAIQWIAIPRLPPKDHPSLKVLAELLGRKDVRVALMAVLLVVSGHFAGFTYIRPLMEQI 272 A +Q IP+LPP S L ++L R +RVAL+ VLLV SGHFAGFTY+RP +E++ Sbjct: 195 ALLVQLATIPKLPPMGVASFLTLLDVLKRPSIRVALLVVLLVASGHFAGFTYVRPFLEKV 254 Query: 273 THMSVATISAVLLGYGVGGFFGNFAGGFIAERSERYAIVSGGTLIALLAASLWVAGSSPV 332 + + TIS VLL YG+GGFFGN AGGF+AER+ + A+ LIAL AAS+ + G SP Sbjct: 255 PVLHIETISLVLLAYGIGGFFGNIAGGFLAERNLKIAVALAPLLIALAAASMLIFGPSPT 314 Query: 333 VAAIAITLWGFAFGAFPVGFQTWIVRAAPDHAEGAGGLMVAAFQVAIASGAIGGGVLVDH 392 +AA A+T WGFAFGA PVG Q+W+VRAAPD AE AGGLMVA FQVAIA GA+ GG+LVDH Sbjct: 315 IAAAAVTAWGFAFGAVPVGLQSWLVRAAPDQAESAGGLMVATFQVAIALGAVFGGLLVDH 374 Query: 393 VGALGGPIFAVIAISLGTLLTLRYGPR 419 G + IA L ++ GP+ Sbjct: 375 AGVASAFAYCGIATLLAAIVVFLRGPK 401