BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0881.p (345 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774496.1| AraC family transcription regulator protein ... 583 e-164 ref|YP_001353560.1| AraC family transcriptional regulator [Janth... 457 e-126 ref|ZP_08530110.1| AraC family transcriptional regulator [Agroba... 332 5e-89 ref|NP_357377.2| AraC family transcriptional regulator [Agrobact... 331 9e-89 gb|EGP54885.1| AraC family transcriptional regulator [Agrobacter... 330 2e-88 >ref|YP_003774496.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62588.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 344 Score = 583 bits (1504), Expect = e-164, Method: Composition-based stats. Identities = 305/344 (88%), Positives = 318/344 (92%), Gaps = 4/344 (1%) Query: 6 MPIFRKDMTIRPNLPEITECAPKDRPTEGVDPLTEILLGLRLDGVEYARYVLHEPWAVAF 65 MPIFRKDMTIRPNL E E P++RP +GVDPLTEILLGLRLDGVEYARYVLHEPWAVAF Sbjct: 1 MPIFRKDMTIRPNLSETPEALPRERPADGVDPLTEILLGLRLDGVEYARYVLHEPWAVAF 60 Query: 66 PARREATFHFIAQGSCWMQVGQDDWLQLNAGDAVLLPRGSAHALASARALPTVEIGKLAR 125 PARREATFHF+AQG CWMQVGQ WLQLN GDAVLLPRG+ HALASA LPTVEIGKLAR Sbjct: 61 PARREATFHFVAQGGCWMQVGQQAWLQLNTGDAVLLPRGAPHALASAPGLPTVEIGKLAR 120 Query: 126 KAVADNLFLVDDSAH--AQSGAAPA--PPTHVVFSGTLRFNLDPLHPLLMMMPEAMRACD 181 KA+ADNLFL+DDS + A + A PA PP+HV+FSGTLRFNLDPLHPLLMMMPEAMRACD Sbjct: 121 KALADNLFLIDDSGNGLADAPAHPASLPPSHVLFSGTLRFNLDPLHPLLMMMPEAMRACD 180 Query: 182 LAQRDPAVLALLDAMEREVALNRIGGCGILARLADVLAASIIRGWVECACSDASGWIAAV 241 LAQRDPAVLALLDAMEREVALNRIG CGILARLADVLAASIIRGWVECACSDASGWIAAV Sbjct: 181 LAQRDPAVLALLDAMEREVALNRIGACGILARLADVLAASIIRGWVECACSDASGWIAAV 240 Query: 242 RCPLVGRVLAAVHQHPERDWSVNELAALMGASRSSFIEKFSATVGETPAKYVARVKMFQA 301 RCP VGRVLAAVHQHPERDWSV ELAALMGASRSSFI+KFSA VGETPAKYVARVKMFQA Sbjct: 241 RCPQVGRVLAAVHQHPERDWSVAELAALMGASRSSFIDKFSAAVGETPAKYVARVKMFQA 300 Query: 302 RHWIARDGLRVAVVANRLGYDSEASFSRAFKRIIGHPPSAARLG 345 RHWIAR+GLRVAVVANRLGYDSEASFSRAFKRIIGHPPS ARLG Sbjct: 301 RHWIAREGLRVAVVANRLGYDSEASFSRAFKRIIGHPPSEARLG 344 >ref|YP_001353560.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR91034.1| transcriptional regulator, AraC family [Janthinobacterium sp. Marseille] Length = 326 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 223/316 (70%), Positives = 262/316 (82%), Gaps = 1/316 (0%) Query: 31 PTEGVDPLTEILLGLRLDGVEYARYVLHEPWAVAFPARREATFHFIAQGSCWMQVGQDDW 90 P + D LTEILLGLRLDGVEY R V+HEPWA+AFP +REA+FHFIAQG CW++ DW Sbjct: 11 PKDTRDTLTEILLGLRLDGVEYGRCVMHEPWAIAFPPKREASFHFIAQGHCWIRTQTTDW 70 Query: 91 LQLNAGDAVLLPRGSAHALASARALPTVEIGKLARKAVADNLFLVDDSAHAQSGAAP-AP 149 ++LN GDA+LLPR + H LAS+ +PT+++ LAR V++NLFLV+D + A Sbjct: 71 MRLNPGDALLLPRSTFHVLASSPEVPTIDVDALARTVVSENLFLVNDEKSSHKVVADDET 130 Query: 150 PTHVVFSGTLRFNLDPLHPLLMMMPEAMRACDLAQRDPAVLALLDAMEREVALNRIGGCG 209 H++F G +RFNLDPLHPLL MMP+ MRACDLAQRDPAVL +L+AMERE+AL+RIG CG Sbjct: 131 AAHILFCGMMRFNLDPLHPLLAMMPDVMRACDLAQRDPAVLVMLEAMEREIALDRIGACG 190 Query: 210 ILARLADVLAASIIRGWVECACSDASGWIAAVRCPLVGRVLAAVHQHPERDWSVNELAAL 269 ILARLADVLAASIIR WVECA S A+GWIAAVRCP +GRVLAA+H PER+WSV ELA + Sbjct: 191 ILARLADVLAASIIRAWVECASSGATGWIAAVRCPQIGRVLAAIHNQPEREWSVAELATV 250 Query: 270 MGASRSSFIEKFSATVGETPAKYVARVKMFQARHWIARDGLRVAVVANRLGYDSEASFSR 329 MGASRSSF+EKFS VGETPAKYVARVKMFQARHWIA +G+R+A VA+RLGYDSEASFSR Sbjct: 251 MGASRSSFVEKFSNAVGETPAKYVARVKMFQARHWIAHEGMRMATVASRLGYDSEASFSR 310 Query: 330 AFKRIIGHPPSAARLG 345 AFKRIIGHPPS AR+G Sbjct: 311 AFKRIIGHPPSEARVG 326 >ref|ZP_08530110.1| AraC family transcriptional regulator [Agrobacterium sp. ATCC 31749] gb|EGL63150.1| AraC family transcriptional regulator [Agrobacterium sp. ATCC 31749] Length = 312 Score = 332 bits (851), Expect = 5e-89, Method: Composition-based stats. Identities = 175/308 (56%), Positives = 214/308 (69%), Gaps = 9/308 (2%) Query: 36 DPLTEILLGLRLDGVEYARYVLHEPWAVAFPARREATFHFIAQGSCWMQVGQDDWLQLNA 95 D LTE+L GLRLDGVEY R L PWA AFP + A FHFI G +Q +WL L Sbjct: 3 DALTEMLRGLRLDGVEYGRCRLATPWATAFPEQDAARFHFIGVGQAKLQKPSGEWLTLTC 62 Query: 96 GDAVLLPRGSAHALASARALPTVEIGKLARKAVADNLFLVDDSAHAQSGAAPAPPTHVVF 155 GDAVLLPRG AH L S ++ +K V +F D A +G V F Sbjct: 63 GDAVLLPRGHAHVLGSGESVTPSPFDHFGKKEVCQGVF---DLQCASAGG-----DTVAF 114 Query: 156 SGTLRFNLDPLHPLLMMMPEAMRACDLAQRDPAVLALLDAMEREVALNRIGGCGILARLA 215 + ++RFN+D LHPLL +MP+ M DLA+ DPA+ LL+AM REV LNR+G GILARLA Sbjct: 115 TASMRFNMDNLHPLLQLMPDVMLTSDLAKSDPAIPHLLEAMTREVELNRVGAGGILARLA 174 Query: 216 DVLAASIIRGWVECACSDASGWIAAVRCPLVGRVLAAVHQHPERDWSVNELAALMGASRS 275 DVL A++IR WVE C D+SGW+AAVR P +GRVLAA+H +PE+DWSV ELA+LMGASRS Sbjct: 175 DVLTATLIRTWVEHGCGDSSGWLAAVRNPELGRVLAAIHLNPEKDWSVEELASLMGASRS 234 Query: 276 SFIEKFSATVGETPAKYVARVKMFQARHWIARDGLRVAVVANRLGYDSEASFSRAFKRII 335 SF E+F+ VGE+PA+YV RV+M QAR W+ R+G+RV V A +LGYDSEASFSRAFKR++ Sbjct: 235 SFAERFTRVVGESPARYVVRVRMHQARLWL-REGMRVTVAAEKLGYDSEASFSRAFKRVL 293 Query: 336 GHPPSAAR 343 G PPS R Sbjct: 294 GAPPSQFR 301 >ref|NP_357377.2| AraC family transcriptional regulator [Agrobacterium tumefaciens str. C58] gb|AAK90162.2| transcriptional regulator, AraC family [Agrobacterium tumefaciens str. C58] Length = 312 Score = 331 bits (849), Expect = 9e-89, Method: Composition-based stats. Identities = 175/308 (56%), Positives = 214/308 (69%), Gaps = 9/308 (2%) Query: 36 DPLTEILLGLRLDGVEYARYVLHEPWAVAFPARREATFHFIAQGSCWMQVGQDDWLQLNA 95 D LTE+L GLRLDGVEY R L PWA AFP + A FHFI G +Q +WL L Sbjct: 3 DALTEMLRGLRLDGVEYGRCRLATPWATAFPEQDAARFHFIGVGQAKLQKPSGEWLTLTC 62 Query: 96 GDAVLLPRGSAHALASARALPTVEIGKLARKAVADNLFLVDDSAHAQSGAAPAPPTHVVF 155 GDAVLLPRG AH L S ++ +K V +F D A +G V F Sbjct: 63 GDAVLLPRGHAHVLGSGESVTPSPFDHFGKKEVCQGVF---DLQCASAGG-----DTVAF 114 Query: 156 SGTLRFNLDPLHPLLMMMPEAMRACDLAQRDPAVLALLDAMEREVALNRIGGCGILARLA 215 + ++RFN+D LHPLL +MP+ M DLA+ DPA+ LL+AM REV LNR+G GILARLA Sbjct: 115 TASMRFNMDNLHPLLQLMPDVMLTSDLAKSDPAIPHLLEAMTREVELNRVGAGGILARLA 174 Query: 216 DVLAASIIRGWVECACSDASGWIAAVRCPLVGRVLAAVHQHPERDWSVNELAALMGASRS 275 DVL A++IR WVE C D+SGW+AAVR P +GRVLAA+H +PE+DWSV ELA+LMGASRS Sbjct: 175 DVLTATLIRTWVEHGCGDSSGWLAAVRNPELGRVLAAIHLNPEKDWSVEELASLMGASRS 234 Query: 276 SFIEKFSATVGETPAKYVARVKMFQARHWIARDGLRVAVVANRLGYDSEASFSRAFKRII 335 SF E+F+ VGE+PA+YV RV+M QAR W+ R+G+RV V A +LGYDSEASFSRAFKR++ Sbjct: 235 SFAERFTRVVGESPARYVVRVRMHQARLWL-REGMRVTVAAEKLGYDSEASFSRAFKRVL 293 Query: 336 GHPPSAAR 343 G PPS R Sbjct: 294 GAPPSQFR 301 >gb|EGP54885.1| AraC family transcriptional regulator [Agrobacterium tumefaciens F2] Length = 312 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 173/308 (56%), Positives = 213/308 (69%), Gaps = 9/308 (2%) Query: 36 DPLTEILLGLRLDGVEYARYVLHEPWAVAFPARREATFHFIAQGSCWMQVGQDDWLQLNA 95 D LTE+L GLRLDGVEY R + PWA AFP + A FHFI G +Q +WL L Sbjct: 3 DALTEMLRGLRLDGVEYGRCRMATPWATAFPEQEAARFHFIGVGQAKLQKPSGEWLTLKC 62 Query: 96 GDAVLLPRGSAHALASARALPTVEIGKLARKAVADNLFLVDDSAHAQSGAAPAPPTHVVF 155 GDAVLLPRG AH L S + + +K V +F D A +G V F Sbjct: 63 GDAVLLPRGHAHILGSGENVRPAPFDRFGKKEVCQGIF---DMQCASAGG-----DTVAF 114 Query: 156 SGTLRFNLDPLHPLLMMMPEAMRACDLAQRDPAVLALLDAMEREVALNRIGGCGILARLA 215 + ++RFN+D LHPLL +MP+ M DLA+ DPA+ LL+AM REV LNR+G GILARLA Sbjct: 115 TASMRFNMDNLHPLLQLMPDVMLTSDLAKSDPAIPHLLEAMAREVELNRVGAGGILARLA 174 Query: 216 DVLAASIIRGWVECACSDASGWIAAVRCPLVGRVLAAVHQHPERDWSVNELAALMGASRS 275 DVL A++IR WVE C D+SGW+AAVR P +GRVLAA+H PE+DWSV ELA+LMGASRS Sbjct: 175 DVLTATLIRTWVEYGCGDSSGWLAAVRNPELGRVLAAIHLTPEKDWSVEELASLMGASRS 234 Query: 276 SFIEKFSATVGETPAKYVARVKMFQARHWIARDGLRVAVVANRLGYDSEASFSRAFKRII 335 SF E+F+ VGE+PA+YV R++M QAR W+ R+G+RV + A +LGYDSEASFSRAFKR+I Sbjct: 235 SFAERFTRVVGESPARYVVRIRMHQARLWL-REGMRVTLAAEKLGYDSEASFSRAFKRVI 293 Query: 336 GHPPSAAR 343 G PPS R Sbjct: 294 GAPPSQFR 301