BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0880.p (386 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001981698.1| GGDEF domain-containing protein [Cellvibrio ... 325 7e-87 ref|ZP_08139356.1| PAS/PAC sensor-containing diguanylate cyclase... 163 5e-38 ref|YP_315214.1| PAS/PAC sensor-containing diguanylate cyclase/p... 162 1e-37 ref|YP_001666664.1| PAS/PAC sensor-containing diguanylate cyclas... 161 2e-37 ref|ZP_08569358.1| PAS domain S-box/diguanylate cyclase (GGDEF) ... 160 3e-37 >ref|YP_001981698.1| GGDEF domain-containing protein [Cellvibrio japonicus Ueda107] gb|ACE86025.1| GGDEF domain protein [Cellvibrio japonicus Ueda107] Length = 387 Score = 325 bits (834), Expect = 7e-87, Method: Composition-based stats. Identities = 193/386 (50%), Positives = 248/386 (64%), Gaps = 10/386 (2%) Query: 1 MHYQIVHAFGAGVYCVFIALFLLAARIPRTPPGANWFAAAISCALLGRLAVLYLTPLGEL 60 M +Q +H G +Y VF LF + IPRT PGA W+A AI A + RL +L L+ G++ Sbjct: 1 MLFQTIHTSGTTIYFVFFILFYWISHIPRTNPGAGWWACAILSAAIARLLLLILSNNGDI 60 Query: 61 ALANPVYGSFLILEKVLLVMGFVRFFDLQQRTLLVRAVGVAAVAAGLWML--WSDNQLAL 118 L Y +FLILEK+ LV+G RF + L V A WML W A+ Sbjct: 61 QLTIFSYSTFLILEKIFLVIGISRFLKVN---LWNHWVFYLAGICSCWMLLAW---YTAM 114 Query: 119 PL-IKSTSYALFNVFALGSLSWMILHDKLDCPPLIRRCMATACIALTLHWASGGLIGHFY 177 PL I S A+FNV LG ++ + + + + ++ C L LHWA+ I F+ Sbjct: 115 PLWIYSIGLAVFNVVVLGFVTVVCFIKRNEVSQRLMLVVSVVCGLLVLHWATFPSI-FFF 173 Query: 178 PPWLRYGFLLGTALVALQYTSLLTAILALFHRRLIQAEAKALKMAFKDPLTGLYNKHFMN 237 P W GF +GT LV +QY LL ++L F +RL+ AE KAL++A++DPLTGL NKH+++ Sbjct: 174 PTWKVIGFGVGTLLVLVQYLGLLASVLLQFQKRLLDAEEKALELAYRDPLTGLNNKHYLS 233 Query: 238 NLFDQALLLATRPHHLVAVYYIDLDNFKPVNDQAGHAVGDKVLMCVAQRLKEAVRSTDIC 297 NLF+QALLLATRPH L+AV YIDLDNFKP+ND AGH GD+VL VA+RLKE RSTDI Sbjct: 234 NLFEQALLLATRPHQLLAVIYIDLDNFKPINDSAGHKTGDEVLKEVAKRLKEYTRSTDIS 293 Query: 298 ARLGGDEFTVIATQLERQDQAPEIAKKLLAKLAAPIEVGHQQFVLGASIGISLYPSHGQD 357 AR+GGDEF VIATQL+ DQ IA KLL +L I+V +VLGASIGIS YP+HG + Sbjct: 294 ARIGGDEFIVIATQLDHIDQINTIANKLLQQLTREIQVDDNTYVLGASIGISFYPAHGDN 353 Query: 358 LSRLLEQADAAMYHVKHRGKSGYELY 383 L+ L+E AD AMYHVK GK+GY +Y Sbjct: 354 LASLIEAADEAMYHVKRSGKNGYVVY 379 >ref|ZP_08139356.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51] gb|EGB99355.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas sp. TJI-51] Length = 1247 Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 91/211 (43%), Positives = 115/211 (54%), Gaps = 5/211 (2%) Query: 174 GHFYPPWLRYGFLLGTALVALQYTSLLTAILALFHRRLIQAEAKALKMAFKDPLTGLYNK 233 G YP WL + T + ++ I +L H A+AK A DPLTGL N+ Sbjct: 764 GELYPSWLTISAVRNTEREITHFVAVFADISSLKH-----AQAKLDYQAHHDPLTGLPNR 818 Query: 234 HFMNNLFDQALLLATRPHHLVAVYYIDLDNFKPVNDQAGHAVGDKVLMCVAQRLKEAVRS 293 N AL A + AV ++DLD FK +ND GH VGD +L +AQRLKE VR Sbjct: 819 ALFENRLQAALACAQVSNRQGAVLFLDLDRFKHINDSLGHPVGDLLLKGIAQRLKEQVRD 878 Query: 294 TDICARLGGDEFTVIATQLERQDQAPEIAKKLLAKLAAPIEVGHQQFVLGASIGISLYPS 353 D ARLGGDEF ++ L + A IA KLLA AP + G +F ASIGISLYP Sbjct: 879 VDTVARLGGDEFIILLPGLHKPSDASSIANKLLACFNAPFQAGEHEFFTSASIGISLYPQ 938 Query: 354 HGQDLSRLLEQADAAMYHVKHRGKSGYELYT 384 G D++ L+ ADAAMY K +G++ E YT Sbjct: 939 DGSDVATLIRNADAAMYRSKAKGRNRVEAYT 969 >ref|YP_315214.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Thiobacillus denitrificans ATCC 25259] gb|AAZ97409.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) [Thiobacillus denitrificans ATCC 25259] Length = 1212 Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 88/211 (41%), Positives = 120/211 (56%), Gaps = 5/211 (2%) Query: 174 GHFYPPWLRYGFLLGTALVALQYTSLLTAILALFHRRLIQAEAKALKMAFKDPLTGLYNK 233 G YP W+ + V Y + T I R+L +A+ K L A+ DPLTGL N+ Sbjct: 741 GTLYPKWMAVSVVRDADGVLTHYVASFTDIT---ERKLAEAQIKHL--AYHDPLTGLSNR 795 Query: 234 HFMNNLFDQALLLATRPHHLVAVYYIDLDNFKPVNDQAGHAVGDKVLMCVAQRLKEAVRS 293 + DQ L LA R +AV ++DLD FK +ND GHA+GD++L+ VA+RL++ VR Sbjct: 796 FSLQTQLDQTLALARREQRTLAVVFLDLDRFKSINDSLGHALGDQLLVEVARRLRDNVRD 855 Query: 294 TDICARLGGDEFTVIATQLERQDQAPEIAKKLLAKLAAPIEVGHQQFVLGASIGISLYPS 353 +DI ARLGGDEF V+ T++ A +A KLL L +G ASIGISLYP Sbjct: 856 SDIVARLGGDEFVVVLTEVGDAAGAARVADKLLGALVPRYRIGGHALHTTASIGISLYPH 915 Query: 354 HGQDLSRLLEQADAAMYHVKHRGKSGYELYT 384 G D L++ AD AMYH K +G+ + +T Sbjct: 916 DGDDADALMKNADTAMYHAKSQGRDNVQFFT 946 >ref|YP_001666664.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase [Pseudomonas putida GB-1] gb|ABY96328.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Pseudomonas putida GB-1] Length = 1247 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 89/211 (42%), Positives = 115/211 (54%), Gaps = 5/211 (2%) Query: 174 GHFYPPWLRYGFLLGTALVALQYTSLLTAILALFHRRLIQAEAKALKMAFKDPLTGLYNK 233 G YP WL + + + ++ I ++ H A+AK A DPLTGL N+ Sbjct: 764 GELYPSWLTISAVRNSEREITHFVAVFADISSIKH-----AQAKLDYQAHHDPLTGLPNR 818 Query: 234 HFMNNLFDQALLLATRPHHLVAVYYIDLDNFKPVNDQAGHAVGDKVLMCVAQRLKEAVRS 293 N L A + AV ++DLD FK +ND GH VGD +L +AQRLKE VR Sbjct: 819 ALFENRLQAVLTCAQVSNRQGAVLFLDLDRFKHINDSLGHPVGDLLLKGIAQRLKEQVRD 878 Query: 294 TDICARLGGDEFTVIATQLERQDQAPEIAKKLLAKLAAPIEVGHQQFVLGASIGISLYPS 353 D ARLGGDEF ++ L + A IA KLLA AAP + G +F ASIGISLYP Sbjct: 879 VDTVARLGGDEFIILLPGLHKPSDASTIANKLLACFAAPFQAGEHEFFTSASIGISLYPQ 938 Query: 354 HGQDLSRLLEQADAAMYHVKHRGKSGYELYT 384 G D++ L+ ADAAMY K +G++ E YT Sbjct: 939 DGTDVATLIRNADAAMYRSKAKGRNRVEAYT 969 >ref|ZP_08569358.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein [Rheinheimera sp. A13L] gb|EGM79102.1| PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein [Rheinheimera sp. A13L] Length = 859 Score = 160 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 84/212 (39%), Positives = 124/212 (58%), Gaps = 5/212 (2%) Query: 174 GHFYPPWLRYGFLLGTALVALQYTSLLTAILALFHRRLIQAEAKALKMAFKDPLTGLYNK 233 G YP WL + G QY ++ + I R E K ++A+ D LTGL N+ Sbjct: 377 GELYPEWLSISAVRGDCGTVNQYAAIFSDITERKKR-----EQKIHELAYFDELTGLANR 431 Query: 234 HFMNNLFDQALLLATRPHHLVAVYYIDLDNFKPVNDQAGHAVGDKVLMCVAQRLKEAVRS 293 + +QAL A R +H +AV ++DLD FK +ND GH GD L VA+RL++A RS Sbjct: 432 RLYQDRLEQALANAKRHNHQLAVLFLDLDLFKRINDTLGHQAGDDALRQVARRLQKASRS 491 Query: 294 TDICARLGGDEFTVIATQLERQDQAPEIAKKLLAKLAAPIEVGHQQFVLGASIGISLYPS 353 + ARLGGDEFTV+ + ++ ++A++++A+ P ++ H++ VL S+GIS+YP Sbjct: 492 GESVARLGGDEFTVLVPECNGIEEIEKLAQRIVAQFELPFQIQHKELVLTTSVGISIYPQ 551 Query: 354 HGQDLSRLLEQADAAMYHVKHRGKSGYELYTA 385 HG S LL+ ADAAMY K G++ Y YT+ Sbjct: 552 HGSTASELLKFADAAMYQAKESGRNKYSFYTS 583