BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0878.p (248 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774495.1| hypothetical protein Hsero_1070 [Herbaspiril... 383 e-104 ref|YP_003674542.1| hypothetical protein M301_1585 [Methylotener... 140 1e-31 ref|YP_003525140.1| hypothetical protein Slit_2528 [Sideroxydans... 129 4e-28 ref|YP_003848122.1| hypothetical protein Galf_2356 [Gallionella ... 122 4e-26 ref|YP_392367.1| hypothetical protein Tcr_2104 [Thiomicrospira c... 120 2e-25 >ref|YP_003774495.1| hypothetical protein Hsero_1070 [Herbaspirillum seropedicae SmR1] gb|ADJ62587.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 198/221 (89%), Positives = 210/221 (95%) Query: 28 TGYYLVEVYSDPGQWTLDYKYWNAKASVGPPIGSPELGIAYGVNSRWYTELYGVTQQDAV 87 TGYYLV VYSDPGQWTLDYKYWNAK+SVGPP+GSPELG+ YGVNSRWYTELYGVTQQDA Sbjct: 25 TGYYLVNVYSDPGQWTLDYKYWNAKSSVGPPVGSPELGVGYGVNSRWYTELYGVTQQDAA 84 Query: 88 QGTQMLSMNWQNDVLLTQGEYPFDLAIHTDVGQYRNSQRDGYSLEWGPALQTEWWRTQFN 147 QGTQMLSMNWQNDVLLTQGEYPFDLAIHTDVGQYRN QR+GY+LEWGPALQTEWWRTQFN Sbjct: 85 QGTQMLSMNWQNDVLLTQGEYPFDLAIHTDVGQYRNRQREGYALEWGPALQTEWWRTQFN 144 Query: 148 ANLFLQRDYRSQRDGPTQLVYQWQVRQHWRPWFNFGLQGFGELGRWDHWATRDQQSHRAG 207 ANLF QRDYR+++ GPTQL YQWQVRQHWRP FNFGLQGFGELGRWDHWA RDQQSHRAG Sbjct: 145 ANLFFQRDYRTRQGGPTQLTYQWQVRQHWRPLFNFGLQGFGELGRWDHWAARDQQSHRAG 204 Query: 208 PALFGTLRMGHQFVKYEAAYLFGSNSTLSARTFTMRLQVGF 248 PA+FGTLR+G QFVKYEAAYLFGSN+T SARTFTMRLQ+GF Sbjct: 205 PAIFGTLRLGRQFVKYEAAYLFGSNATFSARTFTMRLQLGF 245 >ref|YP_003674542.1| hypothetical protein M301_1585 [Methylotenera versatilis 301] gb|ADI29965.1| conserved hypothetical protein [Methylotenera versatilis 301] Length = 249 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 81/239 (33%), Positives = 133/239 (55%), Gaps = 8/239 (3%) Query: 16 LLAALTMP-AGAATGYYLVEVYSDPGQWTLDYKYWNAKASVGPPIGSPELGIAYGVNSRW 74 L++AL M A A + Y+ + G+ +D+K+ AK G LG YGVN W Sbjct: 13 LMSALYMSEALAGSADYVYTPMVEQGEKEIDFKFGTAKLQDGSRQNVTSLGFGYGVNDFW 72 Query: 75 YTELYGVTQQDAVQGTQMLSMNWQNDVLLTQ-GEYPFDLAIHTDVGQYRNSQRDGYSLEW 133 +TE+Y + +A +G + W+N LT+ G+YP ++ + T+ ++ + Y ++ Sbjct: 73 FTEVYLKRESEAGEGLTI--AEWENKFQLTETGKYPIEIGLITEFEAPTSNNNEPYEFKF 130 Query: 134 GPALQTEWWRTQFNANLFLQRDY---RSQRDGPTQLVYQWQVRQHWRPWFNFGLQGFGEL 190 GP QTE+ + Q NAN+ +R + + T++ YQWQ + +P F GLQG GE+ Sbjct: 131 GPLFQTEFGKLQLNANVLFERKFGPNDADESRFTEMGYQWQAKYRLQPSFELGLQGMGEM 190 Query: 191 GRWDHWATRDQQSHRAGPALFGTLRMGH-QFVKYEAAYLFGSNSTLSARTFTMRLQVGF 248 G+W+ W + +Q+HR GPA+FG + +G+ Q +KY AA LFG + TF M+++ F Sbjct: 191 GQWNDWTSTSEQTHRFGPAVFGKVSVGNKQAIKYNAALLFGVSDAAPNNTFRMQVEYEF 249 >ref|YP_003525140.1| hypothetical protein Slit_2528 [Sideroxydans lithotrophicus ES-1] gb|ADE12753.1| conserved hypothetical protein [Sideroxydans lithotrophicus ES-1] Length = 246 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 128/246 (52%), Gaps = 9/246 (3%) Query: 9 GRLLVAGLLAALTMPAGAATGYYLVEVYSDPGQWTLDYKYWNAKASVGPPIGSPELGIAY 68 G + V GLLA A A Y+ + G+ +D+KY + + G +G+ Y Sbjct: 4 GLIAVFGLLAINAGKAIAGPADYVYTPTVEYGEREVDFKYGSFRQKDGTLAQGASIGVGY 63 Query: 69 GVNSRWYTELYGVTQQDAVQGTQMLSMNWQNDVLLTQ-GEYPFDLAIHTDVGQYRNSQRD 127 G W+TE+Y +Q+ + G W+N LT+ G YP D + T++ + S Sbjct: 64 GATEYWFTEIY--LKQEQIGGQIANLAEWENKFQLTETGRYPVDAGLVTEL-EAPLSSNA 120 Query: 128 GYSLEWGPALQTEWWRTQFNANLFLQRDY-RSQRDG---PTQLVYQWQVRQHWRPWFNFG 183 + L+ GP LQTE+ Q N NL +R + ++ G T YQWQ + W+P FG Sbjct: 121 PWELKLGPLLQTEFGNLQLNGNLLFERAFGKADESGVPYSTNFSYQWQAKYRWQPVLEFG 180 Query: 184 LQGFGELGRWDHWATRDQQSHRAGPALFGTLRM-GHQFVKYEAAYLFGSNSTLSARTFTM 242 LQGFGE+G+W+ W + Q HR GPA+FG L + G Q ++Y AA+L G +S TF M Sbjct: 181 LQGFGEMGKWNDWNRQADQVHRIGPAVFGKLGLGGRQAIRYNAAWLSGVSSAAPRHTFRM 240 Query: 243 RLQVGF 248 +++ F Sbjct: 241 QVEYEF 246 >ref|YP_003848122.1| hypothetical protein Galf_2356 [Gallionella capsiferriformans ES-2] gb|ADL56358.1| hypothetical protein Galf_2356 [Gallionella capsiferriformans ES-2] Length = 253 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 119/231 (51%), Gaps = 11/231 (4%) Query: 24 AGAATGYYLVEVYSDPGQWTLDYKYWNAKASVGPPIGSPELGIAYGVNSRWYTELYGVTQ 83 AGAA Y + + G+ L K +A G +G+ YGV W+TELY + Sbjct: 28 AGAADYVYTTAI--EQGERELGLKLGSAAPVDGSGQQVAGIGLGYGVTDHWFTELY--LK 83 Query: 84 QDAVQGTQMLSMNWQNDVLLTQ-GEYPFDLAIHTDVGQYRNSQRDGYSLEWGPALQTEWW 142 Q+ G + W+N LLT+ G+Y DL + ++ + S + L GP LQTE Sbjct: 84 QEHNGGARATLAEWENKWLLTETGQYLLDLGMLAEL-EVPLSGAAPWELRVGPLLQTEIG 142 Query: 143 RTQFNANLFLQRDYRSQRDG----PTQLVYQWQVRQHWRPWFNFGLQGFGELGRWDHWAT 198 + Q N NL R + + + T L QWQ++ W+P FG+QG GE G+WD W+ Sbjct: 143 KFQLNGNLLFVRAFGMKDESGVPFSTNLASQWQIKYRWKPSLEFGMQGLGEFGKWDSWSQ 202 Query: 199 RDQQSHRAGPALFGTLRMGH-QFVKYEAAYLFGSNSTLSARTFTMRLQVGF 248 QSHR GPALFG + +GH Q +KY AA+L G ++ A T +L+ F Sbjct: 203 PAAQSHRMGPALFGKISLGHRQAIKYNAAWLVGVSAAAPAHTLRTQLEYEF 253 >ref|YP_392367.1| hypothetical protein Tcr_2104 [Thiomicrospira crunogena XCL-2] gb|ABB42693.1| hypothetical protein Tcr_2104 [Thiomicrospira crunogena XCL-2] Length = 247 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 79/244 (32%), Positives = 129/244 (52%), Gaps = 14/244 (5%) Query: 11 LLVAGLLAALTMPAGAATGYYLVEVYSDPGQWTLDYKYWNAKASVGPP---IGSPELGIA 67 L G++ + AGAA Y V + G++ +D+KY + + P LG Sbjct: 12 FLSLGVMHSNATFAGAADYVYTPNV--EEGEFEIDFKYGTSGRTDTSPNQKQNVTSLGFG 69 Query: 68 YGVNSRWYTELYGVTQQDAVQGTQMLSMNWQNDVLLTQ-GEYPFDLAIHTDVGQYRNSQR 126 YGV+ +W++ELY ++++ + Q + + ++N LTQ G+YP D+ + T++ N + Sbjct: 70 YGVSEKWFSELYLKSEKENGKPAQNV-LEFENKFQLTQTGQYPIDIGLITELELPSNGE- 127 Query: 127 DGYSLEWGPALQTEWWRTQFNANLFLQRDYRSQRDGPTQLVYQWQVRQHWR--PWFNFGL 184 D + GP Q + Q+N NL + + ++V Q+Q++ +R F FG+ Sbjct: 128 DPSEFKVGPLFQINSGKMQYNVNLLFEAKFGGNNPAANEVVGQYQLQAKYRLKKAFEFGV 187 Query: 185 QGFGELGRWDHWATRDQQSHRAGPALFGTLRMGHQFVKYEAAYLFGSNSTLSARTFTMRL 244 QGFGE+G WD W QQSH+ GPALFG ++G+ +KY AYLFG RT ++L Sbjct: 188 QGFGEVGAWDKWLPASQQSHKIGPALFG--KIGN--IKYNTAYLFGLTKATENRTARLQL 243 Query: 245 QVGF 248 + F Sbjct: 244 EYEF 247