BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0874.p (551 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774491.1| D-ribulose/ribitol kinase [Herbaspirillum se... 838 0.0 ref|ZP_08663628.1| FGGY-family pentulose kinase [Paracoccus sp. ... 658 0.0 ref|YP_915944.1| FGGY-family pentulose kinase [Paracoccus denitr... 639 0.0 ref|ZP_01440967.1| ribitol kinase [Pelagibaca bermudensis HTCC26... 625 e-177 gb|EGP55890.1| ribitol kinase [Agrobacterium tumefaciens F2] 600 e-169 >ref|YP_003774491.1| D-ribulose/ribitol kinase [Herbaspirillum seropedicae SmR1] gb|ADJ62583.1| D-ribulose/ribitol kinase protein [Herbaspirillum seropedicae SmR1] Length = 548 Score = 838 bits (2166), Expect = 0.0, Method: Composition-based stats. Identities = 466/544 (85%), Positives = 486/544 (89%) Query: 1 METYLIGIDVGTGSARAGVFDRSGNLQASARHDIALFRDERRARVEQSSAQIWDAVCHAV 60 METYLIGIDVGTGSARAGVFD G L ASARHDI LFRDERRARVEQSSAQIW+AVC AV Sbjct: 1 METYLIGIDVGTGSARAGVFDPQGQLLASARHDIDLFRDERRARVEQSSAQIWEAVCQAV 60 Query: 61 RGAIAKAGIDPASVTGIGVDATCSLVVQGAQGGVGDADHPERDVIVWMDHRALEQAQRIN 120 R A+ K+GIDPA+V GIGVDATCSLVVQGA GVGD HPERDVIVWMDHRALEQAQRIN Sbjct: 61 RAAVTKSGIDPAAVAGIGVDATCSLVVQGASAGVGDPGHPERDVIVWMDHRALEQAQRIN 120 Query: 121 AGGHAVLSYVGGVISPEMETPKLLWLKEQLPEVYHGAAHFFDLTDFLTWKATGSLQRSSC 180 GHAVLSYVGGVISPEMETPKLLWLKE LPEVY AAHFFDLTDFLTWKATGSLQRSSC Sbjct: 121 RMGHAVLSYVGGVISPEMETPKLLWLKENLPEVYASAAHFFDLTDFLTWKATGSLQRSSC 180 Query: 181 TVTCKWTYLAHEGRWDADYFRRIGLGDLAEEGFARIGQEVVWPGTALNGGLSPEAAQQLQ 240 TVTCKWTYLAHE WDA YFR+IGLGDLAE GFARIG EVVWPGT L GGL+ AAQ + Sbjct: 181 TVTCKWTYLAHEAGWDASYFRQIGLGDLAEAGFARIGAEVVWPGTPLAGGLTQTAAQAMG 240 Query: 241 LRPGIAVAAGLIDAHAGGVATVAARGGAEDAAACMAYVFGTSSCTMTSNAKAVFVPGVWG 300 LRPGIAVAAGLIDAHAGGV TVAARGG DAAACMAYVFGTSSCTMTS+A V VPGVWG Sbjct: 241 LRPGIAVAAGLIDAHAGGVGTVAARGGQGDAAACMAYVFGTSSCTMTSHADPVLVPGVWG 300 Query: 301 PYYNAMAPGMWLNEGGQSAAGAAIDHLLRLHPATPQARLQATSAAMELPQWLAQRALAAV 360 PYY AMAPGMWLNEGGQSAAGAAIDHLLRLHPATPQAR +A A MELPQWLAQ+ALAAV Sbjct: 301 PYYKAMAPGMWLNEGGQSAAGAAIDHLLRLHPATPQAREEAARAQMELPQWLAQQALAAV 360 Query: 361 SQPAQAVWLAGQINVVPEFLGNRSPLADPQARAVLLGLGMEHDIDSLVALYVAGLCSLGY 420 P++AVWLAGQ+ VVPEFLGNRSPLADPQARA L+GLGMEHDIDSLVALYVAGLCSLGY Sbjct: 361 DHPSEAVWLAGQLTVVPEFLGNRSPLADPQARAALVGLGMEHDIDSLVALYVAGLCSLGY 420 Query: 421 GLRQIIEAQAACGVRIASISVSGGAGTHPLTRQLLADATGLPVEITACPEPVLLGSAMLA 480 GLRQIIEAQAACGVR+ SISVSGGAG HPLTRQLLADATG+PVEITA PEPVLLGSAMLA Sbjct: 421 GLRQIIEAQAACGVRVQSISVSGGAGVHPLTRQLLADATGMPVEITASPEPVLLGSAMLA 480 Query: 481 AVAAGTHADLQSAMAAMSSVAGRNAPTGEAIGRLHEARYQAFLKSQQLAREVRDSLAPLL 540 AVAAG HADLQSAM AMSSVAGR+ P + LH ARYQAFLKSQQLARE+RDSLAPLL Sbjct: 481 AVAAGLHADLQSAMPAMSSVAGRSLPAQGDVAALHAARYQAFLKSQQLARELRDSLAPLL 540 Query: 541 AAQS 544 AA + Sbjct: 541 AAHT 544 >ref|ZP_08663628.1| FGGY-family pentulose kinase [Paracoccus sp. TRP] Length = 540 Score = 658 bits (1698), Expect = 0.0, Method: Composition-based stats. Identities = 376/542 (69%), Positives = 420/542 (77%), Gaps = 8/542 (1%) Query: 1 METYLIGIDVGTGSARAGVFDRSGNLQASARHDIALFRDERRARVEQSSAQIWDAVCHAV 60 M+ YLIGIDVGTGSARAGVFDR GNL A+AR I + R ER EQSS Q+W AVC +V Sbjct: 1 MDQYLIGIDVGTGSARAGVFDRKGNLIATARRQIEMHR-ERGIIAEQSSEQVWRAVCDSV 59 Query: 61 RGAIAKAGIDPASVTGIGVDATCSLVVQG---AQGGVGDADHPERDVIVWMDHRALEQAQ 117 R ++ +AGIDPA VTGIG DATCSLVV+G A VGD HPERD+IVWMDHRA+EQA+ Sbjct: 60 RESVTRAGIDPAQVTGIGFDATCSLVVRGDGEATLPVGDPVHPERDIIVWMDHRAVEQAE 119 Query: 118 RINAGGHAVLSYVGGVISPEMETPKLLWLKEQLPEVYHGAAHFFDLTDFLTWKATGSLQR 177 RINA GH VL YVG ISPEMETPKLLWL+E PEVY AAHFFDLTDFLTWKATG+L+R Sbjct: 120 RINAQGHEVLKYVGTRISPEMETPKLLWLRENRPEVYAAAAHFFDLTDFLTWKATGALER 179 Query: 178 SSCTVTCKWTYLAHEGRWDADYFRRIGLGDLAEEGFARIGQEVVWPGTALNGGLSPEAAQ 237 S+CTVTCKWTYLAHEGRWDADYFR+IGL DLAE+GFARIG VV PGT L GL+ AA Sbjct: 180 SACTVTCKWTYLAHEGRWDADYFRQIGLEDLAEQGFARIGARVVDPGTPLGHGLTKAAAS 239 Query: 238 QLQLRPGIAVAAGLIDAHAGGVATVAARGGAEDAAACMAYVFGTSSCTMTSNAKAVFVPG 297 + LRPG AVAAGLIDAHAGGV TVAA DA C+ YVFGTSSCTMT+ + FVPG Sbjct: 240 AMGLRPGTAVAAGLIDAHAGGVGTVAA---GGDATTCLGYVFGTSSCTMTTTREPAFVPG 296 Query: 298 VWGPYYNAMAPGMWLNEGGQSAAGAAIDHLLRLHPATPQARLQATSAAMELPQWLAQRAL 357 VWGPYY+AM PGMWLNEGGQSAAGAAID L++LHPAT +A A +A LPQWLA RAL Sbjct: 297 VWGPYYSAMVPGMWLNEGGQSAAGAAIDQLVQLHPATGEASALAEAAGKSLPQWLADRAL 356 Query: 358 AAVSQPAQAVWLAGQINVVPEFLGNRSPLADPQARAVLLGLGMEHDIDSLVALYVAGLCS 417 A AV LA +++VVPEFLGNR+P ADP ARAV++G GME DSL ALYVAG+C Sbjct: 357 ELAGSAADAVRLADELHVVPEFLGNRAPFADPHARAVIMGQGMETGPDSLAALYVAGICG 416 Query: 418 LGYGLRQIIEAQAACGVRIASISVSGGAGTHPLTRQLLADATGLPVEITACPEPVLLGSA 477 LGYGLRQIIE QAA G + +ISVSGGAG HPLTRQLLADAT LPVE+T C EPVLLGSA Sbjct: 417 LGYGLRQIIETQAAHGAPVETISVSGGAGAHPLTRQLLADATMLPVEVTECAEPVLLGSA 476 Query: 478 MLAAVAAGTHADLQSAMAAMSSVAGRNAPTGEAIGRLHEARYQAFLKSQQLAREVRDSLA 537 ML AVAAG + DL +AM AMS VA R P R EARY AFL Q +AR++R S+A Sbjct: 477 MLGAVAAGVYPDLHTAMPAMSRVATRCVPDPATRAR-QEARYAAFLALQSVARQIRSSMA 535 Query: 538 PL 539 L Sbjct: 536 AL 537 >ref|YP_915944.1| FGGY-family pentulose kinase [Paracoccus denitrificans PD1222] gb|ABL70248.1| FGGY-family pentulose kinase [Paracoccus denitrificans PD1222] Length = 540 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 374/542 (69%), Positives = 426/542 (78%), Gaps = 8/542 (1%) Query: 1 METYLIGIDVGTGSARAGVFDRSGNLQASARHDIALFRDERRARVEQSSAQIWDAVCHAV 60 M+ YLIGIDVGTGSARAGVFDR+G L A+A+ I + R ER EQSS Q+W AVC +V Sbjct: 1 MDQYLIGIDVGTGSARAGVFDRAGRLLATAKRPIEMHR-ERGIVAEQSSEQVWRAVCDSV 59 Query: 61 RGAIAKAGIDPASVTGIGVDATCSLVVQGAQGG---VGDADHPERDVIVWMDHRALEQAQ 117 R ++A+AGIDPA V GIG DATCSLVV+GA VGD HPERD+IVWMDHRA+EQA+ Sbjct: 60 RESVARAGIDPAQVAGIGFDATCSLVVRGAGDATLPVGDPAHPERDIIVWMDHRAVEQAE 119 Query: 118 RINAGGHAVLSYVGGVISPEMETPKLLWLKEQLPEVYHGAAHFFDLTDFLTWKATGSLQR 177 RINA GH VL YVGG ISPEMETPKLLWL+E PE Y AAHFFDLTDFLTWKATG+L+R Sbjct: 120 RINAQGHDVLKYVGGRISPEMETPKLLWLRENRPETYAAAAHFFDLTDFLTWKATGALER 179 Query: 178 SSCTVTCKWTYLAHEGRWDADYFRRIGLGDLAEEGFARIGQEVVWPGTALNGGLSPEAAQ 237 S+CTVTCKWTYLAHEGRWDADYFR+IGLGDLA+ GFARIG VV PGTAL GL+ AA+ Sbjct: 180 SACTVTCKWTYLAHEGRWDADYFRQIGLGDLADNGFARIGSRVVDPGTALGAGLTAAAAE 239 Query: 238 QLQLRPGIAVAAGLIDAHAGGVATVAARGGAEDAAACMAYVFGTSSCTMTSNAKAVFVPG 297 + LRPG AVAAGLIDAHAGGV TVAA DA C+ YVFGTSSCTMT+ + FVPG Sbjct: 240 AMGLRPGTAVAAGLIDAHAGGVGTVAA---GGDATKCLGYVFGTSSCTMTTTREPAFVPG 296 Query: 298 VWGPYYNAMAPGMWLNEGGQSAAGAAIDHLLRLHPATPQARLQATSAAMELPQWLAQRAL 357 VWGPYY+AM PGMWLNEGGQSAAGAAID L++LHPAT +A A +A LPQWLA RAL Sbjct: 297 VWGPYYSAMVPGMWLNEGGQSAAGAAIDQLVQLHPATAEATALAEAAGKSLPQWLADRAL 356 Query: 358 AAVSQPAQAVWLAGQINVVPEFLGNRSPLADPQARAVLLGLGMEHDIDSLVALYVAGLCS 417 + + AV LA +++VVPEFLGNR+P ADP ARAV++G GME DSLVALYVAG+C Sbjct: 357 DLAGEASAAVRLADELHVVPEFLGNRAPFADPHARAVVMGQGMESGPDSLVALYVAGICG 416 Query: 418 LGYGLRQIIEAQAACGVRIASISVSGGAGTHPLTRQLLADATGLPVEITACPEPVLLGSA 477 LGYGLRQIIE QAA G + +IS SGGAG HPLTRQLLADATGLPVE+T CPEPVLLGSA Sbjct: 417 LGYGLRQIIETQAAHGAPVQTISTSGGAGAHPLTRQLLADATGLPVEVTECPEPVLLGSA 476 Query: 478 MLAAVAAGTHADLQSAMAAMSSVAGRNAPTGEAIGRLHEARYQAFLKSQQLAREVRDSLA 537 ML AVAAG + DL +AM AMS +A R AP A R +AR+ AFL Q AR++R ++A Sbjct: 477 MLGAVAAGVYPDLHTAMPAMSRIAMRCAPDPAARAR-QDARHAAFLALQSTARQIRATMA 535 Query: 538 PL 539 L Sbjct: 536 AL 537 >ref|ZP_01440967.1| ribitol kinase [Pelagibaca bermudensis HTCC2601] gb|EAU48302.1| ribitol kinase [Roseovarius sp. HTCC2601] Length = 542 Score = 625 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 361/541 (66%), Positives = 405/541 (74%), Gaps = 5/541 (0%) Query: 1 METYLIGIDVGTGSARAGVFDRSGNLQASARHDIALFRDERRARVEQSSAQIWDAVCHAV 60 M IG+DVGTGSARAGVFDR G L A+A+ DIA+ RD+ VEQSSAQ+WDAVC +V Sbjct: 3 MTDLFIGVDVGTGSARAGVFDREGALLATAKRDIAMHRDDA-GLVEQSSAQVWDAVCASV 61 Query: 61 RGAIAKAGIDPASVTGIGVDATCSLVVQGAQGG--VGDADHPERDVIVWMDHRALEQAQR 118 + AIA G D A VTGIG DATCSLVV G +GG V D PERD+IVWMDHRA EQA R Sbjct: 62 QEAIA--GFDAARVTGIGFDATCSLVVMGPEGGLPVSDDAAPERDIIVWMDHRATEQAAR 119 Query: 119 INAGGHAVLSYVGGVISPEMETPKLLWLKEQLPEVYHGAAHFFDLTDFLTWKATGSLQRS 178 IN G H VL YVGG ISPEM+TPKLLWLKE PE Y A FFDLTDFLTWKA+G+L RS Sbjct: 120 INEGHHDVLKYVGGRISPEMQTPKLLWLKETRPETYAAAEQFFDLTDFLTWKASGALDRS 179 Query: 179 SCTVTCKWTYLAHEGRWDADYFRRIGLGDLAEEGFARIGQEVVWPGTALNGGLSPEAAQQ 238 SCT+TCKWTYLAHEGR+D YF+ IGLGDLAE+ FARIG VV PGTAL GL+ AA Q Sbjct: 180 SCTLTCKWTYLAHEGRFDPAYFQAIGLGDLAEQSFARIGASVVTPGTALGQGLTAAAAAQ 239 Query: 239 LQLRPGIAVAAGLIDAHAGGVATVAARGGAEDAAACMAYVFGTSSCTMTSNAKAVFVPGV 298 + LRPGIAVAAGLIDAHAGG+ TVAA GG A+ C+ YVFGTSSCTMT+ A+ FVPGV Sbjct: 240 MGLRPGIAVAAGLIDAHAGGIGTVAAEGGGGAASDCLGYVFGTSSCTMTTTAEPAFVPGV 299 Query: 299 WGPYYNAMAPGMWLNEGGQSAAGAAIDHLLRLHPATPQARLQATSAAMELPQWLAQRALA 358 WGPYY+AM PGMWLNEGGQSAAGAA+ HL+ LHPA +A A + EL +LA RALA Sbjct: 300 WGPYYSAMVPGMWLNEGGQSAAGAALAHLVTLHPAHAEAERMARAEGKELMPFLADRALA 359 Query: 359 AVSQPAQAVWLAGQINVVPEFLGNRSPLADPQARAVLLGLGMEHDIDSLVALYVAGLCSL 418 A+ LA ++VVPEFLGNR+P ADP+ARA+++G GME ID+LVALYVAGLC L Sbjct: 360 LGGDACGALRLADDLHVVPEFLGNRAPFADPEARAIIVGQGMEQGIDALVALYVAGLCGL 419 Query: 419 GYGLRQIIEAQAACGVRIASISVSGGAGTHPLTRQLLADATGLPVEITACPEPVLLGSAM 478 YGLRQIIE Q A G +ISVSGGAG HPLTRQ+LADATG VEI C EPVLLGSAM Sbjct: 420 CYGLRQIIETQDANGAPTRTISVSGGAGAHPLTRQMLADATGRVVEIIECKEPVLLGSAM 479 Query: 479 LAAVAAGTHADLQSAMAAMSSVAGRNAPTGEAIGRLHEARYQAFLKSQQLAREVRDSLAP 538 L AVAAG DL AM AMS VA R+ P+G LH ARY FL Q LARE R +A Sbjct: 480 LGAVAAGAFDDLPEAMTAMSRVATRSTPSGGRTAMLHGARYDTFLAFQTLARESRARMAA 539 Query: 539 L 539 L Sbjct: 540 L 540 >gb|EGP55890.1| ribitol kinase [Agrobacterium tumefaciens F2] Length = 536 Score = 600 bits (1547), Expect = e-169, Method: Composition-based stats. Identities = 351/538 (65%), Positives = 412/538 (76%), Gaps = 8/538 (1%) Query: 1 METYLIGIDVGTGSARAGVFDRSGNLQASARHDIALFRDERRARVEQSSAQIWDAVCHAV 60 M +YLIG+DVGTGSARAGVFD +G L A+A+ I + R E EQSS ++W AVC +V Sbjct: 1 MASYLIGVDVGTGSARAGVFDVAGRLLATAKRPITMHR-EDGGIAEQSSGEVWKAVCDSV 59 Query: 61 RGAIAKAGIDPASVTGIGVDATCSLVVQGAQGG---VGDADHPERDVIVWMDHRALEQAQ 117 R ++++A ID +SV GIG DATCSLVV+G G VG DHPERD+IVWMDHRA+EQA+ Sbjct: 60 RESVSQAAIDASSVVGIGFDATCSLVVRGPDGETLPVGAPDHPERDIIVWMDHRAVEQAE 119 Query: 118 RINAGGHAVLSYVGGVISPEMETPKLLWLKEQLPEVYHGAAHFFDLTDFLTWKATGSLQR 177 RINAG HAVL YVGG ISPEM+TPKLLWL+E P++Y A HFFDLTDFLTWKA+G+L R Sbjct: 120 RINAGEHAVLKYVGGRISPEMQTPKLLWLRENRPDIYTRAEHFFDLTDFLTWKASGALDR 179 Query: 178 SSCTVTCKWTYLAHEGRWDADYFRRIGLGDLAEEGFARIGQEVVWPGTALNGGLSPEAAQ 237 S+CTVTCKWTYLAHE RWDA+YF RIGLGDLAE+GF RIG+ V PGTAL GL+ EAA+ Sbjct: 180 SACTVTCKWTYLAHEERWDAEYFTRIGLGDLAEQGFRRIGESAVHPGTALGNGLTEEAAE 239 Query: 238 QLQLRPGIAVAAGLIDAHAGGVATVAARGGAEDAAACMAYVFGTSSCTMTSNAKAVFVPG 297 + L G AVAAGLIDAHAGGV TVAA DA+ C+ YVFGTSSCTMT+ A+ FVPG Sbjct: 240 AMGLVAGTAVAAGLIDAHAGGVGTVAA---GGDASRCLGYVFGTSSCTMTTTAEPAFVPG 296 Query: 298 VWGPYYNAMAPGMWLNEGGQSAAGAAIDHLLRLHPATPQARLQATSAAMELPQWLAQRAL 357 VWGPYY+AM PG WLNEGGQSAAGAAID+L++LHPA +A+ A LP WLA RAL Sbjct: 297 VWGPYYSAMVPGAWLNEGGQSAAGAAIDYLVQLHPAFAEAKALAGKEGKALPVWLADRAL 356 Query: 358 AAVSQPAQAVWLAGQINVVPEFLGNRSPLADPQARAVLLGLGMEHDIDSLVALYVAGLCS 417 A + + AV +A +VVPEFLGNR+P ADP ARAV+ G GME +DSLVALYVAGL Sbjct: 357 ALAASASAAVGIAEDFHVVPEFLGNRAPFADPHARAVIAGYGMETGVDSLVALYVAGLLG 416 Query: 418 LGYGLRQIIEAQAACGVRIASISVSGGAGTHPLTRQLLADATGLPVEITACPEPVLLGSA 477 LGYGLRQIIE QA G + ++SVSGGAG HPL RQLLADATGLPVE+T C EPVLLGSA Sbjct: 417 LGYGLRQIIETQARNGAPVETVSVSGGAGAHPLARQLLADATGLPVELTECEEPVLLGSA 476 Query: 478 MLAAVAAGTHADLQSAMAAMSSVAGRNAPTGEAIGRLHEARYQAFLKSQQLAREVRDS 535 ML AVAA T+ DL +AM AMS +A AP A ++H++RY AFL Q AR +R + Sbjct: 477 MLGAVAARTYPDLMAAMPAMSRIASCAAPD-PAFQKVHQSRYDAFLALQDAARAIRSA 533