BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0873.p         (243 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774490.1| ribitol 2-dehydrogenase [Herbaspirillum sero...   464   e-129
gb|EGP55889.1| ribitol 2-dehydrogenase [Agrobacterium tumefacien...   416   e-114
ref|NP_356331.1| ribitol 2-dehydrogenase [Agrobacterium tumefaci...   416   e-114
ref|YP_004444490.1| ribitol 2-dehydrogenase [Agrobacterium sp. H...   412   e-113
ref|YP_915945.1| short-chain dehydrogenase/reductase SDR [Paraco...   407   e-111

>ref|YP_003774490.1| ribitol 2-dehydrogenase [Herbaspirillum seropedicae SmR1]
 gb|ADJ62582.1| ribitol 2-dehydrogenase protein [Herbaspirillum seropedicae SmR1]
          Length = 243

 Score =  464 bits (1194), Expect = e-129,   Method: Composition-based stats.
 Identities = 234/243 (96%), Positives = 238/243 (97%)

Query: 1   MPQSLAGKIAVITGAASGIGLATTEKLLANGVTVVMVDWNAKALDELAARLGPQAIPQVT 60
           M QSLAGKIAVITGAASGIGLATTEKLLANGVTVVMVDWNAKALDELAARLGPQ IPQVT
Sbjct: 1   MTQSLAGKIAVITGAASGIGLATTEKLLANGVTVVMVDWNAKALDELAARLGPQVIPQVT 60

Query: 61  NLLDADSCAAMVPEILAKVDHIDILYCNAGTYIGGELVDTTPEAIDKMLNLNVNAVMKNV 120
           NLLDA+SCAAM PEIL KVDHIDILYCNAGTYIGGELVDTTPEAIDKMLNLNVNAVMKNV
Sbjct: 61  NLLDAESCAAMAPEILKKVDHIDILYCNAGTYIGGELVDTTPEAIDKMLNLNVNAVMKNV 120

Query: 121 HAVAPHMIARKTGDIIVTCSVAGHFPTYWEPVYAGSKWAITCFVQTMRRQMIPHGVRVGQ 180
           HAVAPHM+ RK+GDIIVTCSVAGHFPTYWEPVYAGSKWAITCFVQTMRRQMIPHGVRVGQ
Sbjct: 121 HAVAPHMMERKSGDIIVTCSVAGHFPTYWEPVYAGSKWAITCFVQTMRRQMIPHGVRVGQ 180

Query: 181 VSPGPVISALLADWPEENLRKAKESGSLIEPSEVADAIEYMLTRNRNVTIRDMLVLPTNF 240
           VSPGPVISALLADWPEENLRKAKESGSLIEPSEVADA+EYMLTRNRNVTIRDMLVLPTNF
Sbjct: 181 VSPGPVISALLADWPEENLRKAKESGSLIEPSEVADAVEYMLTRNRNVTIRDMLVLPTNF 240

Query: 241 DRV 243
           DRV
Sbjct: 241 DRV 243


>gb|EGP55889.1| ribitol 2-dehydrogenase [Agrobacterium tumefaciens F2]
          Length = 243

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 207/243 (85%), Positives = 220/243 (90%)

Query: 1   MPQSLAGKIAVITGAASGIGLATTEKLLANGVTVVMVDWNAKALDELAARLGPQAIPQVT 60
           M +SL GKIAVITGAASGIGLATTE LL  G TVVMVDWN KAL+ELA +LG +AIPQVT
Sbjct: 1   MSESLQGKIAVITGAASGIGLATTEALLEQGATVVMVDWNEKALNELAGKLGERAIPQVT 60

Query: 61  NLLDADSCAAMVPEILAKVDHIDILYCNAGTYIGGELVDTTPEAIDKMLNLNVNAVMKNV 120
           NLLDADSC AM+PEIL KVDHIDILYCNAGTYIGG+L +TTPEAIDKMLNLNVNAVMKNV
Sbjct: 61  NLLDADSCNAMIPEILGKVDHIDILYCNAGTYIGGDLTETTPEAIDKMLNLNVNAVMKNV 120

Query: 121 HAVAPHMIARKTGDIIVTCSVAGHFPTYWEPVYAGSKWAITCFVQTMRRQMIPHGVRVGQ 180
            AV PHM  RKTGDI+VTCS+AGHFPTYWEPVY+GSKWAIT FVQ MRRQMIPHGVRV Q
Sbjct: 121 QAVVPHMSERKTGDIVVTCSIAGHFPTYWEPVYSGSKWAITSFVQGMRRQMIPHGVRVAQ 180

Query: 181 VSPGPVISALLADWPEENLRKAKESGSLIEPSEVADAIEYMLTRNRNVTIRDMLVLPTNF 240
           VSPGPV+SALLADWPEENLRKAKESGSLI+ SEVADA+ YMLTR R VTIRDMLVLPTNF
Sbjct: 181 VSPGPVVSALLADWPEENLRKAKESGSLIDASEVADAVVYMLTRKRTVTIRDMLVLPTNF 240

Query: 241 DRV 243
           DRV
Sbjct: 241 DRV 243


>ref|NP_356331.1| ribitol 2-dehydrogenase [Agrobacterium tumefaciens str. C58]
 ref|ZP_08530946.1| ribitol 2-dehydrogenase [Agrobacterium sp. ATCC 31749]
 gb|AAK89116.1| ribitol 2-dehydrogenase [Agrobacterium tumefaciens str. C58]
 gb|EGL62229.1| ribitol 2-dehydrogenase [Agrobacterium sp. ATCC 31749]
          Length = 243

 Score =  416 bits (1069), Expect = e-114,   Method: Composition-based stats.
 Identities = 208/243 (85%), Positives = 221/243 (90%)

Query: 1   MPQSLAGKIAVITGAASGIGLATTEKLLANGVTVVMVDWNAKALDELAARLGPQAIPQVT 60
           M +SL GKIAVITGAASGIGLATTE LL  G TVVMVDWN KAL++LAA+LG +AIPQVT
Sbjct: 1   MSESLQGKIAVITGAASGIGLATTEALLEQGATVVMVDWNEKALNDLAAKLGERAIPQVT 60

Query: 61  NLLDADSCAAMVPEILAKVDHIDILYCNAGTYIGGELVDTTPEAIDKMLNLNVNAVMKNV 120
           NLLDADSC AM+PEIL KVDHIDILYCNAGTYIGG+L +TTPEAIDKMLNLNVNAVMKNV
Sbjct: 61  NLLDADSCNAMIPEILGKVDHIDILYCNAGTYIGGDLTETTPEAIDKMLNLNVNAVMKNV 120

Query: 121 HAVAPHMIARKTGDIIVTCSVAGHFPTYWEPVYAGSKWAITCFVQTMRRQMIPHGVRVGQ 180
            AV PHM  RKTGDIIVTCS+AGHFPTYWEPVY+GSKWAIT FVQ MRRQMIPHGVRV Q
Sbjct: 121 QAVVPHMSERKTGDIIVTCSIAGHFPTYWEPVYSGSKWAITSFVQGMRRQMIPHGVRVAQ 180

Query: 181 VSPGPVISALLADWPEENLRKAKESGSLIEPSEVADAIEYMLTRNRNVTIRDMLVLPTNF 240
           VSPGPV+SALLADWPEENLRKAKESGSLI+ SEVADA+ YMLTR R VTIRDMLVLPTNF
Sbjct: 181 VSPGPVVSALLADWPEENLRKAKESGSLIDASEVADAVVYMLTRKRTVTIRDMLVLPTNF 240

Query: 241 DRV 243
           DRV
Sbjct: 241 DRV 243


>ref|YP_004444490.1| ribitol 2-dehydrogenase [Agrobacterium sp. H13-3]
 gb|ADY67399.1| ribitol 2-dehydrogenase [Agrobacterium sp. H13-3]
          Length = 243

 Score =  412 bits (1058), Expect = e-113,   Method: Composition-based stats.
 Identities = 206/243 (84%), Positives = 218/243 (89%)

Query: 1   MPQSLAGKIAVITGAASGIGLATTEKLLANGVTVVMVDWNAKALDELAARLGPQAIPQVT 60
           M + L GKIAVITGAASGIGLATTE LL NG TVVMVDWN KAL+EL  +LG +AI QVT
Sbjct: 1   MSELLQGKIAVITGAASGIGLATTEALLENGATVVMVDWNEKALNELVGKLGKRAIAQVT 60

Query: 61  NLLDADSCAAMVPEILAKVDHIDILYCNAGTYIGGELVDTTPEAIDKMLNLNVNAVMKNV 120
           NLLDADSC AM+PEIL KVDHIDILYCNAGTYIGG+L +TTPEAIDKMLNLNVNAVMKNV
Sbjct: 61  NLLDADSCNAMIPEILEKVDHIDILYCNAGTYIGGDLTETTPEAIDKMLNLNVNAVMKNV 120

Query: 121 HAVAPHMIARKTGDIIVTCSVAGHFPTYWEPVYAGSKWAITCFVQTMRRQMIPHGVRVGQ 180
            AV PHM  RKTGDIIVTCS+AGHFPTYWEPVY+GSKWAIT FVQ MRRQMIPHGVRV Q
Sbjct: 121 QAVVPHMSERKTGDIIVTCSIAGHFPTYWEPVYSGSKWAITSFVQGMRRQMIPHGVRVAQ 180

Query: 181 VSPGPVISALLADWPEENLRKAKESGSLIEPSEVADAIEYMLTRNRNVTIRDMLVLPTNF 240
           VSPGPV+SALLADWPEENLRKAKESGSLI+ SEVADA+ YMLTR R VTIRDMLVLPTNF
Sbjct: 181 VSPGPVVSALLADWPEENLRKAKESGSLIDASEVADAVVYMLTRKRTVTIRDMLVLPTNF 240

Query: 241 DRV 243
           DRV
Sbjct: 241 DRV 243


>ref|YP_915945.1| short-chain dehydrogenase/reductase SDR [Paracoccus denitrificans
           PD1222]
 gb|ABL70249.1| short-chain dehydrogenase/reductase SDR [Paracoccus denitrificans
           PD1222]
          Length = 243

 Score =  407 bits (1045), Expect = e-111,   Method: Composition-based stats.
 Identities = 202/243 (83%), Positives = 217/243 (89%)

Query: 1   MPQSLAGKIAVITGAASGIGLATTEKLLANGVTVVMVDWNAKALDELAARLGPQAIPQVT 60
           M +SL GKIAVITGAASGIGLA T +LL  G TVVMVDWN  AL ELA +LG +AIPQVT
Sbjct: 1   MSESLDGKIAVITGAASGIGLAATRRLLDRGATVVMVDWNEAALAELAGKLGDRAIPQVT 60

Query: 61  NLLDADSCAAMVPEILAKVDHIDILYCNAGTYIGGELVDTTPEAIDKMLNLNVNAVMKNV 120
           NLLD DSC AM+PEILAKVDHIDILYCNAGTYIGGEL +TTPEAID+MLNLNVNAVMKNV
Sbjct: 61  NLLDVDSCNAMIPEILAKVDHIDILYCNAGTYIGGELTETTPEAIDRMLNLNVNAVMKNV 120

Query: 121 HAVAPHMIARKTGDIIVTCSVAGHFPTYWEPVYAGSKWAITCFVQTMRRQMIPHGVRVGQ 180
            AV PHM  RKTGDI+VTCS+AGHFPT+WEPVY+GSKWAIT FVQ MRRQMIPHGVRV Q
Sbjct: 121 RAVVPHMTRRKTGDIVVTCSIAGHFPTWWEPVYSGSKWAITSFVQGMRRQMIPHGVRVMQ 180

Query: 181 VSPGPVISALLADWPEENLRKAKESGSLIEPSEVADAIEYMLTRNRNVTIRDMLVLPTNF 240
           VSPGPV+SALLADWPEENLRKA+ESGSLI+  EVADA+EYMLTR R VTIRDMLVLPTNF
Sbjct: 181 VSPGPVVSALLADWPEENLRKARESGSLIDAEEVADALEYMLTRKRTVTIRDMLVLPTNF 240

Query: 241 DRV 243
           DRV
Sbjct: 241 DRV 243