BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0872.p (336 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774489.1| ribose/xylose/arabinose/galactoside ABC tran... 463 e-128 ref|ZP_05739534.1| ABC transporter, carbohydrate uptake transpor... 386 e-105 ref|ZP_08663630.1| inner-membrane translocator [Paracoccus sp. TRP] 384 e-104 ref|ZP_01440969.1| ABC transporter, membrane spanning protein (r... 379 e-103 ref|NP_356332.2| ABC transporter, membrane spanning protein (rib... 379 e-103 >ref|YP_003774489.1| ribose/xylose/arabinose/galactoside ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62581.1| ABC-type ribose/xylose/arabinose/galactoside transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 328 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 300/328 (91%), Positives = 314/328 (95%) Query: 9 MQHEANTLGSAPVRASSQARWRALIHSPLALPLVGLVVVSLLMGLASDNFFTVSNWLNVL 68 M H+AN L +A + ++ ARWR+LIHSPLALPL GLVVVSLLMGLASDNFFT+SNW NVL Sbjct: 1 MPHDANALPAASLHTAASARWRSLIHSPLALPLAGLVVVSLLMGLASDNFFTLSNWFNVL 60 Query: 69 RQVSIVGILAVGMTFVILTGGIDLSVGAAMALAGTLSAGLIVNSGLPAPVALLAGIALAV 128 RQVSIVGILAVGM+FVILTGGIDLSVGAAMALAGT+SAGLIVNSGLPAP+ALL G+ LA Sbjct: 61 RQVSIVGILAVGMSFVILTGGIDLSVGAAMALAGTISAGLIVNSGLPAPLALLCGVGLAT 120 Query: 129 GIGLLNGALVAWGRMPAIIVTLATMGVARGVGLIYSGGYPISGLPGWISWFGVGRIGMIP 188 IGLLNGALVAWGRMPAIIVTLATMGVARGVGLIYSGGYPISGLPGWISWFGVGRIGM+P Sbjct: 121 CIGLLNGALVAWGRMPAIIVTLATMGVARGVGLIYSGGYPISGLPGWISWFGVGRIGMVP 180 Query: 189 VPVILMLVVYALAWVLLQRTPFGRHVYAIGGNEMAARLSGVKTTRIKLAVYAISGFTSGL 248 VPVILML+VYALAW+LLQRT FGRHVYAIGGNEMAARLSGVKTTRIKLAVYAISGFTSGL Sbjct: 181 VPVILMLIVYALAWLLLQRTAFGRHVYAIGGNEMAARLSGVKTTRIKLAVYAISGFTSGL 240 Query: 249 AAIILTGRLMSGQPNAGVGFELDAIAAVVLGGTAIAGGRGLVVGTLIGAVLLGILNNGLN 308 AAIILTGRLMSGQPNAGVGFELDAIAAVVLGGTAIAGGRGLVVGTLIGAVLLGILNNGLN Sbjct: 241 AAIILTGRLMSGQPNAGVGFELDAIAAVVLGGTAIAGGRGLVVGTLIGAVLLGILNNGLN 300 Query: 309 LMGINPYLQDIIRGVIILLAIYIAREWR 336 LMGINPYLQDIIRGVIILLAIYIAREWR Sbjct: 301 LMGINPYLQDIIRGVIILLAIYIAREWR 328 >ref|ZP_05739534.1| ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, permease protein [Silicibacter sp. TrichCH4B] gb|EEW60605.1| ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, permease protein [Silicibacter sp. TrichCH4B] Length = 322 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 249/306 (81%), Positives = 283/306 (92%) Query: 30 RALIHSPLALPLVGLVVVSLLMGLASDNFFTVSNWLNVLRQVSIVGILAVGMTFVILTGG 89 R ++HSPLALPL+GL+VVS+LMG AS+NFF+VSN +NVLRQVSIVGILAVGMTFVILTGG Sbjct: 17 RRILHSPLALPLIGLIVVSILMGFASENFFSVSNIMNVLRQVSIVGILAVGMTFVILTGG 76 Query: 90 IDLSVGAAMALAGTLSAGLIVNSGLPAPVALLAGIALAVGIGLLNGALVAWGRMPAIIVT 149 IDLSVGA MAL+GTL+AGL+VN +P V LLAG+ + VG+GL NGA+VAWGRMPAIIVT Sbjct: 77 IDLSVGAVMALSGTLAAGLMVNMAMPGWVGLLAGLGVGVGLGLFNGAMVAWGRMPAIIVT 136 Query: 150 LATMGVARGVGLIYSGGYPISGLPGWISWFGVGRIGMIPVPVILMLVVYALAWVLLQRTP 209 LATMG+ARG+GL+YSGGYPISG+P WISWFG+GRIG++PVPVI M+V+YALAWVLLQRT Sbjct: 137 LATMGIARGLGLLYSGGYPISGIPSWISWFGIGRIGIVPVPVIAMVVIYALAWVLLQRTA 196 Query: 210 FGRHVYAIGGNEMAARLSGVKTTRIKLAVYAISGFTSGLAAIILTGRLMSGQPNAGVGFE 269 FGRHVYAIGGNE+AA+LSGVKT +KL VY ISG TS AA+ILTGRLMSGQPNAGVGFE Sbjct: 197 FGRHVYAIGGNELAAKLSGVKTQFVKLTVYGISGLTSAFAALILTGRLMSGQPNAGVGFE 256 Query: 270 LDAIAAVVLGGTAIAGGRGLVVGTLIGAVLLGILNNGLNLMGINPYLQDIIRGVIILLAI 329 LDAIAAVVLGGTAIAGGRGL++GTLIGAVLLGILNNGLNLMGINPYLQD+I+G+IILLAI Sbjct: 257 LDAIAAVVLGGTAIAGGRGLILGTLIGAVLLGILNNGLNLMGINPYLQDVIKGLIILLAI 316 Query: 330 YIAREW 335 YI REW Sbjct: 317 YIGREW 322 >ref|ZP_08663630.1| inner-membrane translocator [Paracoccus sp. TRP] Length = 325 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 258/328 (78%), Positives = 291/328 (88%), Gaps = 3/328 (0%) Query: 9 MQHEANTLGSAPVRASSQARWRALIHSPLALPLVGLVVVSLLMGLASDNFFTVSNWLNVL 68 M H+A+T + + R L+ SPLALPL+GL+VVS+LMGLASDNFFT++N LNVL Sbjct: 1 MSHDASTGAAGKTGGLTLGR---LLQSPLALPLIGLIVVSILMGLASDNFFTLNNILNVL 57 Query: 69 RQVSIVGILAVGMTFVILTGGIDLSVGAAMALAGTLSAGLIVNSGLPAPVALLAGIALAV 128 RQVS+VGILAVGMTFVILTGGIDLSVGA MAL GTLSAG++VN G+PA AL G+ + + Sbjct: 58 RQVSVVGILAVGMTFVILTGGIDLSVGAVMALVGTLSAGMMVNMGVPAAAALALGLLIGL 117 Query: 129 GIGLLNGALVAWGRMPAIIVTLATMGVARGVGLIYSGGYPISGLPGWISWFGVGRIGMIP 188 GIGL NG LVAWGRMPAIIVTLATMG+ARG+GLIYSGGYPISG+P WISWFGVGRIG+IP Sbjct: 118 GIGLANGVLVAWGRMPAIIVTLATMGMARGLGLIYSGGYPISGIPSWISWFGVGRIGIIP 177 Query: 189 VPVILMLVVYALAWVLLQRTPFGRHVYAIGGNEMAARLSGVKTTRIKLAVYAISGFTSGL 248 VPV++M+ +YA+AWVLLQRT FGRHVYA+GGNE AARLSGVKT R+KLAVY ISG TS L Sbjct: 178 VPVVIMVAIYAVAWVLLQRTAFGRHVYALGGNENAARLSGVKTQRVKLAVYGISGLTSAL 237 Query: 249 AAIILTGRLMSGQPNAGVGFELDAIAAVVLGGTAIAGGRGLVVGTLIGAVLLGILNNGLN 308 AA+ILTGRLMSGQPNAGVGFELDAIAAVVLGGTAIAGGRGL++GTLIGAVLLGILNNGLN Sbjct: 238 AAVILTGRLMSGQPNAGVGFELDAIAAVVLGGTAIAGGRGLILGTLIGAVLLGILNNGLN 297 Query: 309 LMGINPYLQDIIRGVIILLAIYIAREWR 336 LMGINPYLQD+I+G IILLAIYI REWR Sbjct: 298 LMGINPYLQDVIKGAIILLAIYIGREWR 325 >ref|ZP_01440969.1| ABC transporter, membrane spanning protein (ribose) [Pelagibaca bermudensis HTCC2601] gb|EAU48304.1| ABC transporter, membrane spanning protein (ribose) [Roseovarius sp. HTCC2601] Length = 307 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 247/306 (80%), Positives = 282/306 (92%) Query: 30 RALIHSPLALPLVGLVVVSLLMGLASDNFFTVSNWLNVLRQVSIVGILAVGMTFVILTGG 89 R ++HSPLALPL+GL+VVS+LMG AS+NFF+V N +NVLRQVSIV ILAVGMTFVILTGG Sbjct: 2 RWVLHSPLALPLIGLIVVSILMGFASENFFSVGNIMNVLRQVSIVAILAVGMTFVILTGG 61 Query: 90 IDLSVGAAMALAGTLSAGLIVNSGLPAPVALLAGIALAVGIGLLNGALVAWGRMPAIIVT 149 IDLSVGA MAL+GT++AGL+VN GLP V LLAG+ + VG+G+ NG +VAWGRMPAIIVT Sbjct: 62 IDLSVGAVMALSGTIAAGLMVNMGLPGWVGLLAGLGVGVGLGIFNGVMVAWGRMPAIIVT 121 Query: 150 LATMGVARGVGLIYSGGYPISGLPGWISWFGVGRIGMIPVPVILMLVVYALAWVLLQRTP 209 LATMG+ARG+GL+YSGGYPISG+P WISWFG+GRIG++PVPVI M++VYALAWVLLQRTP Sbjct: 122 LATMGIARGLGLLYSGGYPISGIPSWISWFGIGRIGIVPVPVIAMVIVYALAWVLLQRTP 181 Query: 210 FGRHVYAIGGNEMAARLSGVKTTRIKLAVYAISGFTSGLAAIILTGRLMSGQPNAGVGFE 269 FGRHVYAIGGNE+AA+LSGVKT +KL VY ISG TS AA+ILTGRLMSGQPNAGVGFE Sbjct: 182 FGRHVYAIGGNELAAKLSGVKTQMVKLTVYGISGLTSAFAALILTGRLMSGQPNAGVGFE 241 Query: 270 LDAIAAVVLGGTAIAGGRGLVVGTLIGAVLLGILNNGLNLMGINPYLQDIIRGVIILLAI 329 LDAIAAVVLGGTAIAGGRGL++GTLIGAVLLGILNNGLNLMGINPYLQD+I+G+IILLAI Sbjct: 242 LDAIAAVVLGGTAIAGGRGLILGTLIGAVLLGILNNGLNLMGINPYLQDVIKGLIILLAI 301 Query: 330 YIAREW 335 YI REW Sbjct: 302 YIGREW 307 >ref|NP_356332.2| ABC transporter, membrane spanning protein (ribose) [Agrobacterium tumefaciens str. C58] ref|ZP_08530947.1| ABC transporter, membrane spanning protein (ribose) [Agrobacterium sp. ATCC 31749] gb|AAK89117.2| ABC transporter, membrane spanning protein (ribose) [Agrobacterium tumefaciens str. C58] gb|EGL62230.1| ABC transporter, membrane spanning protein (ribose) [Agrobacterium sp. ATCC 31749] Length = 325 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 250/308 (81%), Positives = 286/308 (92%) Query: 29 WRALIHSPLALPLVGLVVVSLLMGLASDNFFTVSNWLNVLRQVSIVGILAVGMTFVILTG 88 + A++ SPLALPL GL+VVS+LMGLASDNFF+V+N +NVLRQVS+VGILAVGMTFVILTG Sbjct: 18 FSAMLRSPLALPLAGLIVVSILMGLASDNFFSVNNIMNVLRQVSVVGILAVGMTFVILTG 77 Query: 89 GIDLSVGAAMALAGTLSAGLIVNSGLPAPVALLAGIALAVGIGLLNGALVAWGRMPAIIV 148 GIDLSVGA MAL GTLSAGL+VN+GL +AL AG+ + +GIG+ NGALVAWGRMPAIIV Sbjct: 78 GIDLSVGAVMALVGTLSAGLMVNTGLSPAIALPAGLFIGLGIGIFNGALVAWGRMPAIIV 137 Query: 149 TLATMGVARGVGLIYSGGYPISGLPGWISWFGVGRIGMIPVPVILMLVVYALAWVLLQRT 208 TLATMG+ARG+GLIYSGGYP+SG+P WISWFGVGR+G++PVPVI+M+V+YA+AWVLLQRT Sbjct: 138 TLATMGMARGLGLIYSGGYPVSGIPSWISWFGVGRVGIVPVPVIIMVVIYAVAWVLLQRT 197 Query: 209 PFGRHVYAIGGNEMAARLSGVKTTRIKLAVYAISGFTSGLAAIILTGRLMSGQPNAGVGF 268 FGRHVYA+GGNE+AARLSGVKT R+KLAVY ISG T+ AA+ILTGRLMSGQPNAGVGF Sbjct: 198 AFGRHVYALGGNELAARLSGVKTRRVKLAVYGISGVTAAFAALILTGRLMSGQPNAGVGF 257 Query: 269 ELDAIAAVVLGGTAIAGGRGLVVGTLIGAVLLGILNNGLNLMGINPYLQDIIRGVIILLA 328 ELDAIAAVVLGGTAIAGGRGL++GTLIGAVLLGILNNGLNLMGINPYLQD+I+G IILLA Sbjct: 258 ELDAIAAVVLGGTAIAGGRGLILGTLIGAVLLGILNNGLNLMGINPYLQDVIKGGIILLA 317 Query: 329 IYIAREWR 336 IYI REWR Sbjct: 318 IYIGREWR 325