BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0871.p (506 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774488.1| sugar ABC transporter ATPase [Herbaspirillum... 858 0.0 ref|ZP_01440970.1| ABC transporter, nucleotide binding/ATPase pr... 733 0.0 ref|YP_004444488.1| ribose ABC transporter, ATP-binding protein ... 726 0.0 ref|ZP_05739288.1| ribose import ATP-binding protein RbsA 2 [Sil... 723 0.0 gb|EGP55887.1| ABC transporter, nucleotide binding/ATPase protei... 720 0.0 >ref|YP_003774488.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] gb|ADJ62580.1| ABC-type sugar transport system, ATPase component protein [Herbaspirillum seropedicae SmR1] Length = 506 Score = 858 bits (2216), Expect = 0.0, Method: Composition-based stats. Identities = 444/506 (87%), Positives = 463/506 (91%) Query: 1 MEAAMLQLTGIKKNFGPVTVLRGVDLQVRAGEVHALLGENGAGKSTLMKILCGIVTPDAG 60 MEAAMLQLTGIKKNFGPVTVLRGVDL+VRAGEVHALLGENGAGKSTLMKILCGIV PDAG Sbjct: 1 MEAAMLQLTGIKKNFGPVTVLRGVDLEVRAGEVHALLGENGAGKSTLMKILCGIVRPDAG 60 Query: 61 EIRIDGQACRFASYHEAIAAGVGVVFQEFSLIPYLDAVDNMFLARELRSPLGLLMRAEMR 120 EIRIDGQ CRF SY AIA GVGVVFQEFSLIPYLDAVDNMFLARELRS G L RA MR Sbjct: 61 EIRIDGQPCRFDSYRAAIAGGVGVVFQEFSLIPYLDAVDNMFLARELRSRWGWLQRAAMR 120 Query: 121 RRAAQIIAQLGVEIPLEVPVCKLSVAQQQFVEIAKALALDARILVLDEPTATLTPGEVEH 180 RRA +II QLGV IPL+VPVCKLSVAQQQFVEIAKALALDARILVLDEPTATLTP EVEH Sbjct: 121 RRAQEIIGQLGVAIPLDVPVCKLSVAQQQFVEIAKALALDARILVLDEPTATLTPAEVEH 180 Query: 181 LFKVMRGLREQGVAIIFISHHLEEIFEICDRISVLRDGAYIGTCAVSEVDQARLVEMMVG 240 LF VMR LR QGVAIIFISHHLEEIFEICDRI+VLRDGAY+ TCA +EVDQARLVEMMVG Sbjct: 181 LFAVMRSLRAQGVAIIFISHHLEEIFEICDRITVLRDGAYVATCATAEVDQARLVEMMVG 240 Query: 241 RRIENCFPPKPATTIAAAAEVVLEVQALQLKRNGPVSRFQLRRGEILGFAGLVGSGRTET 300 RRIENCFPPKPA EVVLEV ALQL+R PVS+FQLRRGEILGFAGLVGSGRTET Sbjct: 241 RRIENCFPPKPAKGGEGEGEVVLEVHALQLRRQAPVSQFQLRRGEILGFAGLVGSGRTET 300 Query: 301 VLAMLGAHPAVQCKLSMHGVPLRFADPAQALQAGIGLLPESRKEQGLITSFPILHNISLN 360 VLAMLGAH A+ CKLSMHGVPLRFADPAQALQAGIGLLPESRKEQGLITSF ILHN+SLN Sbjct: 301 VLAMLGAHAALSCKLSMHGVPLRFADPAQALQAGIGLLPESRKEQGLITSFSILHNVSLN 360 Query: 361 NYGKYRAGGLFLDRRREAEATRIAMQRVRVKAPDAHARVDTLSGGNQQKVVIARWINHNM 420 NYGKYR GGLFLDRRRE +AT AMQRVRVKAP A RVDTLSGGNQQKVVIARWINH M Sbjct: 361 NYGKYRLGGLFLDRRREQQATEAAMQRVRVKAPGAQVRVDTLSGGNQQKVVIARWINHAM 420 Query: 421 QVLIFDEPTRGIDVGAKAEIYQLMREFTAQGYSIIMISSELPEVVGMSDRVCVFKGGGIV 480 +VLIFDEPTRGIDVGAK+EIYQLMREFTAQGYSI+MISSELPEVVGM+DRVCVF+GGGIV Sbjct: 421 KVLIFDEPTRGIDVGAKSEIYQLMREFTAQGYSILMISSELPEVVGMADRVCVFRGGGIV 480 Query: 481 ATVEGDAVTAEEIMTHATTGRLHHAA 506 AT+EG+AV AEEIMTHATTGR+ HAA Sbjct: 481 ATLEGEAVNAEEIMTHATTGRIRHAA 506 >ref|ZP_01440970.1| ABC transporter, nucleotide binding/ATPase protein (ribose) [Pelagibaca bermudensis HTCC2601] gb|EAU48305.1| ABC transporter, nucleotide binding/ATPase protein (ribose) [Roseovarius sp. HTCC2601] Length = 500 Score = 733 bits (1891), Expect = 0.0, Method: Composition-based stats. Identities = 376/502 (74%), Positives = 424/502 (84%), Gaps = 2/502 (0%) Query: 5 MLQLTGIKKNFGPVTVLRGVDLQVRAGEVHALLGENGAGKSTLMKILCGIVTPDAGEIRI 64 MLQLTGIKK FG + VL GVDL VRAGEVHALLGENGAGKSTLMKIL GI+ P G I I Sbjct: 1 MLQLTGIKKRFGSIQVLHGVDLDVRAGEVHALLGENGAGKSTLMKILTGILKPSEGTITI 60 Query: 65 DGQACRFASYHEAIAAGVGVVFQEFSLIPYLDAVDNMFLARELRSPLGLLMRAEMRRRAA 124 +G+ FA+Y EAI AG+G+VFQEFSLIPYL AV+NMFLARE+R P GLL R MR+RA Sbjct: 61 EGETRHFANYDEAIEAGIGIVFQEFSLIPYLTAVENMFLAREIRGPFGLLDRKAMRKRAK 120 Query: 125 QIIAQLGVEIPLEVPVCKLSVAQQQFVEIAKALALDARILVLDEPTATLTPGEVEHLFKV 184 +I+A+L V +PL+VP+ KLSVA+QQFVEIAKAL+L+ARILVLDEPTATLTP EVEHLFKV Sbjct: 121 EILARLEVNVPLDVPIAKLSVAEQQFVEIAKALSLNARILVLDEPTATLTPSEVEHLFKV 180 Query: 185 MRGLREQGVAIIFISHHLEEIFEICDRISVLRDGAYIGTCAVSEVDQARLVEMMVGRRIE 244 MR LR+QGVAIIFISHHLEEIFEICDRI+VLRDG Y+G C VSE D RLVEMMVGRRIE Sbjct: 181 MRELRKQGVAIIFISHHLEEIFEICDRITVLRDGEYVGDCLVSETDNDRLVEMMVGRRIE 240 Query: 245 NCFPPKPATTIAAAAEVVLEVQALQLKRNGPVSRFQLRRGEILGFAGLVGSGRTETVLAM 304 N FP KP A+V+LE + +QL++ GP+S F LR GEILGFAGLVGSGRTET LAM Sbjct: 241 NSFPEKPGPR--PGAKVMLECEEVQLRKGGPISDFLLREGEILGFAGLVGSGRTETALAM 298 Query: 305 LGAHPAVQCKLSMHGVPLRFADPAQALQAGIGLLPESRKEQGLITSFPILHNISLNNYGK 364 LGA+PA +CK+ + G RF +PA+AL GIGLLPESRKEQGLITSF IL NISLNNYGK Sbjct: 299 LGAYPASRCKVMVDGEETRFKEPAEALAHGIGLLPESRKEQGLITSFSILQNISLNNYGK 358 Query: 365 YRAGGLFLDRRREAEATRIAMQRVRVKAPDAHARVDTLSGGNQQKVVIARWINHNMQVLI 424 YR G F+D ++E EAT+ AM +VRVKA ARVDTLSGGNQQKVVIARW+NH M+VLI Sbjct: 359 YRKGHWFIDLQKEREATQTAMGQVRVKAQGPMARVDTLSGGNQQKVVIARWLNHQMKVLI 418 Query: 425 FDEPTRGIDVGAKAEIYQLMREFTAQGYSIIMISSELPEVVGMSDRVCVFKGGGIVATVE 484 FDEPTRGIDVGAKAEIYQLMR FTAQGY+IIMISSELPEV+GMSDRVCVF+ GGIVAT+E Sbjct: 419 FDEPTRGIDVGAKAEIYQLMRAFTAQGYAIIMISSELPEVIGMSDRVCVFRQGGIVATLE 478 Query: 485 GDAVTAEEIMTHATTGRLHHAA 506 GDA+ AEEIMTHATTGR+ H A Sbjct: 479 GDAINAEEIMTHATTGRVRHVA 500 >ref|YP_004444488.1| ribose ABC transporter, ATP-binding protein [Agrobacterium sp. H13-3] gb|ADY67397.1| ribose ABC transporter, ATP-binding protein [Agrobacterium sp. H13-3] Length = 500 Score = 726 bits (1874), Expect = 0.0, Method: Composition-based stats. Identities = 373/502 (74%), Positives = 427/502 (85%), Gaps = 2/502 (0%) Query: 5 MLQLTGIKKNFGPVTVLRGVDLQVRAGEVHALLGENGAGKSTLMKILCGIVTPDAGEIRI 64 ML+L GI+K+FG + VLRGVDLQ RAGEVHALLGENGAGKSTLMKILCGI+ P G IRI Sbjct: 1 MLELNGIRKSFGKIEVLRGVDLQARAGEVHALLGENGAGKSTLMKILCGILQPSEGTIRI 60 Query: 65 DGQACRFASYHEAIAAGVGVVFQEFSLIPYLDAVDNMFLARELRSPLGLLMRAEMRRRAA 124 DG+ RFA+Y EAIAAG+G+VFQEFSLIPYLDAV+NMFLARE+R PL LL + MR+RAA Sbjct: 61 DGKDRRFANYDEAIAAGIGIVFQEFSLIPYLDAVENMFLAREIRGPLRLLNKRAMRKRAA 120 Query: 125 QIIAQLGVEIPLEVPVCKLSVAQQQFVEIAKALALDARILVLDEPTATLTPGEVEHLFKV 184 +I+++L V++PL+VPV +LSVAQQQFVEIAKAL+LDARILVLDEPTATLTP E EHLFKV Sbjct: 121 EIMSRLAVDVPLDVPVHRLSVAQQQFVEIAKALSLDARILVLDEPTATLTPSETEHLFKV 180 Query: 185 MRGLREQGVAIIFISHHLEEIFEICDRISVLRDGAYIGTCAVSEVDQARLVEMMVGRRIE 244 MR LR QGVAIIFISHHLEEIFEICDRI+VLRDG IG+C S+VD RLVEMMVGRRIE Sbjct: 181 MRELRRQGVAIIFISHHLEEIFEICDRITVLRDGELIGSCLTSDVDNDRLVEMMVGRRIE 240 Query: 245 NCFPPKPATTIAAAAEVVLEVQALQLKRNGPVSRFQLRRGEILGFAGLVGSGRTETVLAM 304 FPPKP I AA V+EV+ LQLK+ GPVSRF LR+GEILGFAGLVGSGRTETVLAM Sbjct: 241 ANFPPKP--KIDTAARNVIEVEELQLKKGGPVSRFTLRQGEILGFAGLVGSGRTETVLAM 298 Query: 305 LGAHPAVQCKLSMHGVPLRFADPAQALQAGIGLLPESRKEQGLITSFPILHNISLNNYGK 364 LGAH A + K+ + GV RF+ P +AL GIGLLPESRKE+GLITSF IL NISLNNY K Sbjct: 299 LGAHSASRRKIKVDGVETRFSGPDEALMRGIGLLPESRKEEGLITSFSILQNISLNNYRK 358 Query: 365 YRAGGLFLDRRREAEATRIAMQRVRVKAPDAHARVDTLSGGNQQKVVIARWINHNMQVLI 424 Y+ F+D ++E E T+ AM +V+VKA +ARVDTLSGGNQQK+VIARW+NH+M+VLI Sbjct: 359 YQKAHWFIDLKKELEHTKKAMAQVQVKAQGPYARVDTLSGGNQQKIVIARWLNHDMRVLI 418 Query: 425 FDEPTRGIDVGAKAEIYQLMREFTAQGYSIIMISSELPEVVGMSDRVCVFKGGGIVATVE 484 FDEPTRGIDVGAKAEIY LMREF A+GYSIIMISSELPEV+GMSDRVCVF+ GGIVATVE Sbjct: 419 FDEPTRGIDVGAKAEIYALMREFAAKGYSIIMISSELPEVIGMSDRVCVFRSGGIVATVE 478 Query: 485 GDAVTAEEIMTHATTGRLHHAA 506 G + +E IMT+ATTGR+ H A Sbjct: 479 GADINSETIMTNATTGRVEHVA 500 >ref|ZP_05739288.1| ribose import ATP-binding protein RbsA 2 [Silicibacter sp. TrichCH4B] gb|EEW60359.1| ribose import ATP-binding protein RbsA 2 [Silicibacter sp. TrichCH4B] Length = 500 Score = 723 bits (1866), Expect = 0.0, Method: Composition-based stats. Identities = 375/502 (74%), Positives = 421/502 (83%), Gaps = 2/502 (0%) Query: 5 MLQLTGIKKNFGPVTVLRGVDLQVRAGEVHALLGENGAGKSTLMKILCGIVTPDAGEIRI 64 MLQL+GIKK FG + VL GVDL+V AGEVHALLGENGAGKSTLMKIL GI+ P AG I I Sbjct: 1 MLQLSGIKKRFGTIQVLHGVDLEVNAGEVHALLGENGAGKSTLMKILTGILQPSAGSILI 60 Query: 65 DGQACRFASYHEAIAAGVGVVFQEFSLIPYLDAVDNMFLARELRSPLGLLMRAEMRRRAA 124 +GQ +FA+Y EAIAAG+G+VFQEFSLIPYLDAV+NMFLARELR+ GLL R MR+RA Sbjct: 61 EGQERQFANYDEAIAAGIGIVFQEFSLIPYLDAVENMFLARELRTRFGLLDRKAMRKRAE 120 Query: 125 QIIAQLGVEIPLEVPVCKLSVAQQQFVEIAKALALDARILVLDEPTATLTPGEVEHLFKV 184 I+A+L V++PL+VP+ KLSVA+QQFVEIAKAL+L+ARILVLDEPTATLTP EV HLFKV Sbjct: 121 DILARLEVDVPLDVPIRKLSVAEQQFVEIAKALSLNARILVLDEPTATLTPSEVAHLFKV 180 Query: 185 MRGLREQGVAIIFISHHLEEIFEICDRISVLRDGAYIGTCAVSEVDQARLVEMMVGRRIE 244 MR LR QGVAIIFISHHLEEIFEICDRI+VLRDG Y+G C VSE D RLVEMMVGRRIE Sbjct: 181 MRELRRQGVAIIFISHHLEEIFEICDRITVLRDGEYVGDCLVSETDNDRLVEMMVGRRIE 240 Query: 245 NCFPPKPATTIAAAAEVVLEVQALQLKRNGPVSRFQLRRGEILGFAGLVGSGRTETVLAM 304 N FP KP +I A ++L Q +QL+R GPVS F LR GEILGFAGLVGSGRTET LA+ Sbjct: 241 NSFPEKP--SIPQDAPILLNCQEVQLRRGGPVSDFVLREGEILGFAGLVGSGRTETALAL 298 Query: 305 LGAHPAVQCKLSMHGVPLRFADPAQALQAGIGLLPESRKEQGLITSFPILHNISLNNYGK 364 LGA+PA +C L + G +RF +PA AL GIGLLPESRKEQGLITSF IL NIS+NNYGK Sbjct: 299 LGAYPAAKCALQVEGEDIRFREPADALARGIGLLPESRKEQGLITSFSILQNISINNYGK 358 Query: 365 YRAGGLFLDRRREAEATRIAMQRVRVKAPDAHARVDTLSGGNQQKVVIARWINHNMQVLI 424 YR G FLD ++E T AMQ+VRVKA RVDTLSGGNQQKVVIARW+NH M+VLI Sbjct: 359 YRRGHWFLDLQKERADTETAMQQVRVKAQGPMDRVDTLSGGNQQKVVIARWLNHQMKVLI 418 Query: 425 FDEPTRGIDVGAKAEIYQLMREFTAQGYSIIMISSELPEVVGMSDRVCVFKGGGIVATVE 484 FDEPTRGIDVGAKAEIYQLMR FTAQGY+IIMISSELPEV+GMSDRVCVF+ GGIVATVE Sbjct: 419 FDEPTRGIDVGAKAEIYQLMRAFTAQGYAIIMISSELPEVIGMSDRVCVFRQGGIVATVE 478 Query: 485 GDAVTAEEIMTHATTGRLHHAA 506 G A+T+E IMTHATTGR+ H A Sbjct: 479 GAAITSEYIMTHATTGRVRHVA 500 >gb|EGP55887.1| ABC transporter, nucleotide binding/ATPase protein (ribose) [Agrobacterium tumefaciens F2] Length = 500 Score = 720 bits (1859), Expect = 0.0, Method: Composition-based stats. Identities = 371/502 (73%), Positives = 423/502 (84%), Gaps = 2/502 (0%) Query: 5 MLQLTGIKKNFGPVTVLRGVDLQVRAGEVHALLGENGAGKSTLMKILCGIVTPDAGEIRI 64 ML+L GI+K+FG + VLRGVDLQ R GEVHALLGENGAGKSTLMKILCGI+ P G IRI Sbjct: 1 MLELNGIRKSFGKIEVLRGVDLQARPGEVHALLGENGAGKSTLMKILCGILQPSEGTIRI 60 Query: 65 DGQACRFASYHEAIAAGVGVVFQEFSLIPYLDAVDNMFLARELRSPLGLLMRAEMRRRAA 124 DG RFA+Y EAIAAG+G+VFQEFSLIPYL+AV+NMFLARE+R PL LL + MR+RAA Sbjct: 61 DGTDRRFANYDEAIAAGIGIVFQEFSLIPYLNAVENMFLAREIRGPLRLLNKGAMRKRAA 120 Query: 125 QIIAQLGVEIPLEVPVCKLSVAQQQFVEIAKALALDARILVLDEPTATLTPGEVEHLFKV 184 +I+++L V++PL+VPV +LSVAQQQFVEIAKAL+LDARILVLDEPTATLTP E EHLFKV Sbjct: 121 EIMSRLAVDVPLDVPVHRLSVAQQQFVEIAKALSLDARILVLDEPTATLTPSETEHLFKV 180 Query: 185 MRGLREQGVAIIFISHHLEEIFEICDRISVLRDGAYIGTCAVSEVDQARLVEMMVGRRIE 244 MR LR QGVAIIFISHHLEEIFEICDRI+VLRDG IG+C SEVD RLVEMMVGRRIE Sbjct: 181 MRELRRQGVAIIFISHHLEEIFEICDRITVLRDGELIGSCLTSEVDNDRLVEMMVGRRIE 240 Query: 245 NCFPPKPATTIAAAAEVVLEVQALQLKRNGPVSRFQLRRGEILGFAGLVGSGRTETVLAM 304 FPPKP I A+A V+EV+ LQLKR GPVSRF LR GEILGFAGLVGSGRTET LAM Sbjct: 241 ASFPPKP--KIDASARNVIEVEELQLKRGGPVSRFSLREGEILGFAGLVGSGRTETALAM 298 Query: 305 LGAHPAVQCKLSMHGVPLRFADPAQALQAGIGLLPESRKEQGLITSFPILHNISLNNYGK 364 LGAH A + K+ + GV RF+ P +AL GIGLLPESRKE+GLITSF IL NISLNNY K Sbjct: 299 LGAHSASRRKVKVDGVDTRFSGPDEALARGIGLLPESRKEEGLITSFSILQNISLNNYRK 358 Query: 365 YRAGGLFLDRRREAEATRIAMQRVRVKAPDAHARVDTLSGGNQQKVVIARWINHNMQVLI 424 Y F+D ++E E T+ AM +V+VKA ARVDTLSGGNQQK+VIARW+NH+M+VLI Sbjct: 359 YPKAHWFIDLKKELEYTKKAMAQVQVKAQGPFARVDTLSGGNQQKIVIARWLNHDMRVLI 418 Query: 425 FDEPTRGIDVGAKAEIYQLMREFTAQGYSIIMISSELPEVVGMSDRVCVFKGGGIVATVE 484 FDEPTRGIDVGAKAEIY LMREF A+G+SIIMISSELPEV+GMSDRVCVF+ GGIVATVE Sbjct: 419 FDEPTRGIDVGAKAEIYALMREFAAKGHSIIMISSELPEVIGMSDRVCVFRSGGIVATVE 478 Query: 485 GDAVTAEEIMTHATTGRLHHAA 506 G+ + +E IMT+ATTGR+ H A Sbjct: 479 GEDINSETIMTNATTGRVEHVA 500