BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0870.p (323 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774487.1| sugar ABC transporter periplasmic protein [H... 481 e-134 ref|NP_356334.1| ABC transporter, substrate binding protein (rib... 430 e-118 ref|YP_004444487.1| ribose ABC transporter, periplasmic ribose-b... 430 e-118 gb|EGP55886.1| ABC transporter, substrate binding protein (ribos... 429 e-118 ref|ZP_08663632.1| periplasmic binding protein/LacI transcriptio... 421 e-116 >ref|YP_003774487.1| sugar ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62579.1| ABC-type sugar transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 277/283 (97%), Positives = 280/283 (98%) Query: 41 AQELSKLKIGMSFQEMNNPYFVSMKKALDDAAKSFGAKVIVTDAAHNVAKQIADIEDMLQ 100 AQE+SKLKIGMSFQEMNNPYFVSMKKALD+AAKS GAKVI TDAAHNVAKQIADIEDMLQ Sbjct: 20 AQEVSKLKIGMSFQEMNNPYFVSMKKALDEAAKSLGAKVIATDAAHNVAKQIADIEDMLQ 79 Query: 101 QNIDILLINPTDSAGVEAAVKAAKARNVIVVAVDANASGPVDMFVGSKNKDAGYQSCRAL 160 QNIDILLINPTDSAGVEAAVKAAKARNVIVVAVDANASGPVDMFVGSKNKDAGYQSCRAL Sbjct: 80 QNIDILLINPTDSAGVEAAVKAAKARNVIVVAVDANASGPVDMFVGSKNKDAGYQSCRAL 139 Query: 161 ADAIGGKGEVAILDGIPVVPILQRVEGCKQALGEYKDIKLVATQNGRQDRSVALGVVENM 220 ADAIGGKGEVAILDGIPVVPILQRVEGCKQAL EYKDIKLVATQNGRQDRSVALGVVENM Sbjct: 140 ADAIGGKGEVAILDGIPVVPILQRVEGCKQALAEYKDIKLVATQNGRQDRSVALGVVENM 199 Query: 221 IQSRPNLKGIFSVNDGGAMGALAAIQGSGKDIKLTSVDGAPEAVKAIADGGPFIETTAQF 280 IQSRPNLKGIFSVNDGGAMGALAAIQGSGKDIKLTSVDGAPEAVKAIADGGPF+ETTAQF Sbjct: 200 IQSRPNLKGIFSVNDGGAMGALAAIQGSGKDIKLTSVDGAPEAVKAIADGGPFVETTAQF 259 Query: 281 PRDQVRVGLAMALAKKWGARVVPKEVPIDVMPVTKKNAAGFSW 323 PRDQVRVGLAMALAKKWGARVVPKEVPIDVMPVTKKNAAGFSW Sbjct: 260 PRDQVRVGLAMALAKKWGARVVPKEVPIDVMPVTKKNAAGFSW 302 >ref|NP_356334.1| ABC transporter, substrate binding protein (ribose) [Agrobacterium tumefaciens str. C58] ref|ZP_08530949.1| ABC transporter, substrate binding protein (ribose) [Agrobacterium sp. ATCC 31749] gb|AAK89119.1| ABC transporter, substrate binding protein (ribose) [Agrobacterium tumefaciens str. C58] gb|EGL62232.1| ABC transporter, substrate binding protein (ribose) [Agrobacterium sp. ATCC 31749] Length = 303 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 238/278 (85%), Positives = 256/278 (92%) Query: 46 KLKIGMSFQEMNNPYFVSMKKALDDAAKSFGAKVIVTDAAHNVAKQIADIEDMLQQNIDI 105 KLKIGM+FQE+NNPYFVSM++AL +AA S GA V+VTDA H+VAKQI+D+EDMLQQ IDI Sbjct: 26 KLKIGMTFQELNNPYFVSMQEALKEAAASIGADVVVTDAGHDVAKQISDVEDMLQQKIDI 85 Query: 106 LLINPTDSAGVEAAVKAAKARNVIVVAVDANASGPVDMFVGSKNKDAGYQSCRALADAIG 165 LL+NPTDSAG+EAAV AAKA VIVVAVDANA+GPVD FVGSKN+DAGY+SC+ L DA+G Sbjct: 86 LLLNPTDSAGIEAAVHAAKAAGVIVVAVDANANGPVDTFVGSKNRDAGYKSCKHLGDALG 145 Query: 166 GKGEVAILDGIPVVPILQRVEGCKQALGEYKDIKLVATQNGRQDRSVALGVVENMIQSRP 225 GKGEVAILDGIPVVPILQRVEGCK AL E+ DIKLV TQNGRQDRSVALGVVENMIQSRP Sbjct: 146 GKGEVAILDGIPVVPILQRVEGCKAALAEFADIKLVDTQNGRQDRSVALGVVENMIQSRP 205 Query: 226 NLKGIFSVNDGGAMGALAAIQGSGKDIKLTSVDGAPEAVKAIADGGPFIETTAQFPRDQV 285 NL GIFSVNDGGAMGALAAIQGSGKDIKLTSVDGAPEAVKAIADGGPFIETTAQFPRDQV Sbjct: 206 NLAGIFSVNDGGAMGALAAIQGSGKDIKLTSVDGAPEAVKAIADGGPFIETTAQFPRDQV 265 Query: 286 RVGLAMALAKKWGARVVPKEVPIDVMPVTKKNAAGFSW 323 RVGLAMALA+KWGARVVPKEVPIDVM V KNA FSW Sbjct: 266 RVGLAMALAQKWGARVVPKEVPIDVMVVDSKNAGEFSW 303 >ref|YP_004444487.1| ribose ABC transporter, periplasmic ribose-binding protein [Agrobacterium sp. H13-3] gb|ADY67396.1| ribose ABC transporter, periplasmic ribose-binding protein [Agrobacterium sp. H13-3] Length = 303 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 238/278 (85%), Positives = 256/278 (92%) Query: 46 KLKIGMSFQEMNNPYFVSMKKALDDAAKSFGAKVIVTDAAHNVAKQIADIEDMLQQNIDI 105 KLKIGM+FQE+NNPYFVSM++AL +AA S GA V+VTDA H+VAKQI+D+EDMLQQ IDI Sbjct: 26 KLKIGMTFQELNNPYFVSMQEALKEAAASIGADVVVTDAGHDVAKQISDVEDMLQQKIDI 85 Query: 106 LLINPTDSAGVEAAVKAAKARNVIVVAVDANASGPVDMFVGSKNKDAGYQSCRALADAIG 165 LL+NPTDSAG+EAAV AAKA VIVVAVDANA+GPVD FVGSKN+DAGY+SC+ L DA+G Sbjct: 86 LLLNPTDSAGIEAAVHAAKAAGVIVVAVDANANGPVDTFVGSKNRDAGYKSCKHLGDALG 145 Query: 166 GKGEVAILDGIPVVPILQRVEGCKQALGEYKDIKLVATQNGRQDRSVALGVVENMIQSRP 225 GKGEVAILDGIPVVPILQRVEGCK AL E+ DIKLV TQNGRQDRSVALGVVENMIQSRP Sbjct: 146 GKGEVAILDGIPVVPILQRVEGCKAALAEFADIKLVDTQNGRQDRSVALGVVENMIQSRP 205 Query: 226 NLKGIFSVNDGGAMGALAAIQGSGKDIKLTSVDGAPEAVKAIADGGPFIETTAQFPRDQV 285 NL GIFSVNDGGAMGALAAIQGSGKDIKLTSVDGAPEAVKAIADGGPFIETTAQFPRDQV Sbjct: 206 NLAGIFSVNDGGAMGALAAIQGSGKDIKLTSVDGAPEAVKAIADGGPFIETTAQFPRDQV 265 Query: 286 RVGLAMALAKKWGARVVPKEVPIDVMPVTKKNAAGFSW 323 RVGLAMALA+KWGARVVPKEVPIDVM V KNA FSW Sbjct: 266 RVGLAMALAQKWGARVVPKEVPIDVMVVDSKNAGDFSW 303 >gb|EGP55886.1| ABC transporter, substrate binding protein (ribose) [Agrobacterium tumefaciens F2] Length = 301 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 237/278 (85%), Positives = 255/278 (91%) Query: 46 KLKIGMSFQEMNNPYFVSMKKALDDAAKSFGAKVIVTDAAHNVAKQIADIEDMLQQNIDI 105 KLKIGM+FQE+NNPYFVSM++AL +AA S GA V+VTDA H+VAKQI+D+EDMLQQ IDI Sbjct: 24 KLKIGMTFQELNNPYFVSMQEALKEAAASIGADVVVTDAGHDVAKQISDVEDMLQQKIDI 83 Query: 106 LLINPTDSAGVEAAVKAAKARNVIVVAVDANASGPVDMFVGSKNKDAGYQSCRALADAIG 165 LL+NPTDSAG+EAAV AAKA V VVAVDANA+GPVD FVGSKN+DAGYQSC+ L DA+G Sbjct: 84 LLLNPTDSAGIEAAVHAAKAAGVTVVAVDANANGPVDTFVGSKNRDAGYQSCKYLGDALG 143 Query: 166 GKGEVAILDGIPVVPILQRVEGCKQALGEYKDIKLVATQNGRQDRSVALGVVENMIQSRP 225 GKGEVAILDGIPVVPILQRVEGCK AL E+ +IKLV TQNGRQDRSVALGVVENMIQSRP Sbjct: 144 GKGEVAILDGIPVVPILQRVEGCKAALAEFPEIKLVDTQNGRQDRSVALGVVENMIQSRP 203 Query: 226 NLKGIFSVNDGGAMGALAAIQGSGKDIKLTSVDGAPEAVKAIADGGPFIETTAQFPRDQV 285 NL GIFSVNDGGAMGALAAIQGSGKDIKLTSVDGAPEAVKAIADGGPFIETTAQFPRDQV Sbjct: 204 NLAGIFSVNDGGAMGALAAIQGSGKDIKLTSVDGAPEAVKAIADGGPFIETTAQFPRDQV 263 Query: 286 RVGLAMALAKKWGARVVPKEVPIDVMPVTKKNAAGFSW 323 RVGLAMALA+KWGARVVPKEVPIDVM V KNA FSW Sbjct: 264 RVGLAMALAQKWGARVVPKEVPIDVMVVDSKNAGDFSW 301 >ref|ZP_08663632.1| periplasmic binding protein/LacI transcriptional regulator [Paracoccus sp. TRP] Length = 301 Score = 421 bits (1082), Expect = e-116, Method: Composition-based stats. Identities = 229/278 (82%), Positives = 253/278 (91%) Query: 46 KLKIGMSFQEMNNPYFVSMKKALDDAAKSFGAKVIVTDAAHNVAKQIADIEDMLQQNIDI 105 KLKIGM+FQE+NNPYFVSM++AL +AA S GA+V+VTDA H+VAKQI+D+EDMLQQNIDI Sbjct: 24 KLKIGMTFQELNNPYFVSMQEALKEAAASLGAEVVVTDAGHDVAKQISDVEDMLQQNIDI 83 Query: 106 LLINPTDSAGVEAAVKAAKARNVIVVAVDANASGPVDMFVGSKNKDAGYQSCRALADAIG 165 LL+NPTDSAG+EAAV AAKA V VVAVDANA+GPVD FVGSKN+DAGY SC+ L + + Sbjct: 84 LLLNPTDSAGIEAAVHAAKAAGVTVVAVDANANGPVDTFVGSKNRDAGYMSCKYLGETLE 143 Query: 166 GKGEVAILDGIPVVPILQRVEGCKQALGEYKDIKLVATQNGRQDRSVALGVVENMIQSRP 225 GKGEVAILDGIPVVPILQRVEGCK AL E+ +IKLV TQNGRQDRSVALGVVENMIQS P Sbjct: 144 GKGEVAILDGIPVVPILQRVEGCKAALEEFPEIKLVDTQNGRQDRSVALGVVENMIQSHP 203 Query: 226 NLKGIFSVNDGGAMGALAAIQGSGKDIKLTSVDGAPEAVKAIADGGPFIETTAQFPRDQV 285 NL GIFSVNDGGAMGALAAIQGSGKDIKL SVDGAPEA+KAI +GGPFIETTAQFPRDQV Sbjct: 204 NLAGIFSVNDGGAMGALAAIQGSGKDIKLVSVDGAPEAIKAITEGGPFIETTAQFPRDQV 263 Query: 286 RVGLAMALAKKWGARVVPKEVPIDVMPVTKKNAAGFSW 323 RVGLA+ALA+KWGARVVPKEVPIDVM V K+NAA FSW Sbjct: 264 RVGLALALAQKWGARVVPKEVPIDVMVVDKENAADFSW 301