BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0869.p (294 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774486.1| AraC family transcription regulator protein ... 593 e-167 ref|ZP_01440972.1| transcriptional regulator, AraC family protei... 473 e-131 ref|YP_915949.1| helix-turn-helix domain-containing protein [Par... 465 e-129 ref|ZP_05739396.1| activator protein [Silicibacter sp. TrichCH4B... 464 e-129 ref|ZP_08663633.1| helix-turn-helix domain-containing protein [P... 458 e-127 >ref|YP_003774486.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62578.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 294 Score = 593 bits (1528), Expect = e-167, Method: Composition-based stats. Identities = 281/294 (95%), Positives = 288/294 (97%) Query: 1 MQPDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVVATSGRFYVGDHIGDFAPG 60 MQPDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVVATSGRFYVGDHIGDFAPG Sbjct: 1 MQPDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVVATSGRFYVGDHIGDFAPG 60 Query: 61 QLVMTGPNLPQNWISDIGRDEVVPVRSLVIQFPEQLVDQCAASIPEMDAIMPLLERSHRG 120 QLVMTGPNLPQNWISDI DE+VPVRSLVIQFPEQLVDQCAASI EM+AIMPLLERSHRG Sbjct: 61 QLVMTGPNLPQNWISDIAADEMVPVRSLVIQFPEQLVDQCAASIAEMEAIMPLLERSHRG 120 Query: 121 LLFDAATSDTVRPLMQRLIDQRGLKRLALFWEILDVLANSPEPEVLASLSYKLDLSGVNS 180 LLFDAATS+TVRPLMQRLIDQRGLKRLALFWE+LDVLAN+PEPEVLASLSYKLDLSGVNS Sbjct: 121 LLFDAATSETVRPLMQRLIDQRGLKRLALFWELLDVLANAPEPEVLASLSYKLDLSGVNS 180 Query: 181 SGLNRAIAYLREHLTDDIGEQDLADMVGQNLSTFSRAFKRHTGTTLVRYKNQLRVDLACL 240 SGLNRAIAYLREHLTDDIGEQDLADMVGQNLS+FSRAFKRHTGTTLVRYKNQLRVDLACL Sbjct: 181 SGLNRAIAYLREHLTDDIGEQDLADMVGQNLSSFSRAFKRHTGTTLVRYKNQLRVDLACL 240 Query: 241 ALLNNPEARITDICYETGFSNLSNFNRHFQKIKGMSPSEFRNTFASNGLFAATG 294 ALL P+ARITDICYETGFSNLSNFNRHF KIKGMSPSEFRNTFASNGLFAATG Sbjct: 241 ALLTRPQARITDICYETGFSNLSNFNRHFHKIKGMSPSEFRNTFASNGLFAATG 294 >ref|ZP_01440972.1| transcriptional regulator, AraC family protein [Pelagibaca bermudensis HTCC2601] gb|EAU48307.1| transcriptional regulator, AraC family protein [Roseovarius sp. HTCC2601] Length = 294 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 215/291 (73%), Positives = 251/291 (86%) Query: 1 MQPDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVVATSGRFYVGDHIGDFAPG 60 MQPDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVV T G FY+GDHIG F PG Sbjct: 1 MQPDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVVDTHGTFYIGDHIGAFGPG 60 Query: 61 QLVMTGPNLPQNWISDIGRDEVVPVRSLVIQFPEQLVDQCAASIPEMDAIMPLLERSHRG 120 QL+MTGPNLPQNWISDI DE+VP RS V+QFPE ++ AA++PEMDAI PLLERSHRG Sbjct: 61 QLIMTGPNLPQNWISDIAPDEIVPARSFVVQFPETFIEDAAAAMPEMDAIRPLLERSHRG 120 Query: 121 LLFDAATSDTVRPLMQRLIDQRGLKRLALFWEILDVLANSPEPEVLASLSYKLDLSGVNS 180 LLF AT++ V+PLM L + RGL+RLALFWEILD LAN+PEPEVLASLSY+LDL + Sbjct: 121 LLFSPATAEAVKPLMTELFEARGLRRLALFWEILDQLANAPEPEVLASLSYELDLDALKD 180 Query: 181 SGLNRAIAYLREHLTDDIGEQDLADMVGQNLSTFSRAFKRHTGTTLVRYKNQLRVDLACL 240 G+N+AIA+LRE+LT+ I E+DLA+MV Q+ S FSRAFKRHTG+TLVRYKNQLRVDLAC Sbjct: 181 VGVNKAIAHLRENLTESIDEKDLAEMVNQSPSAFSRAFKRHTGSTLVRYKNQLRVDLACQ 240 Query: 241 ALLNNPEARITDICYETGFSNLSNFNRHFQKIKGMSPSEFRNTFASNGLFA 291 LL PEA++ +IC++ GFSNLSNFNRHF ++KGMSPS+FR TFA+NG+F+ Sbjct: 241 MLLTQPEAKVAEICFDVGFSNLSNFNRHFVRLKGMSPSQFRATFAANGVFS 291 >ref|YP_915949.1| helix-turn-helix domain-containing protein [Paracoccus denitrificans PD1222] gb|ABL70253.1| transcriptional regulator, AraC family [Paracoccus denitrificans PD1222] Length = 294 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 213/286 (74%), Positives = 250/286 (87%) Query: 1 MQPDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVVATSGRFYVGDHIGDFAPG 60 MQPDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVVATSG FY+GDH+G F PG Sbjct: 1 MQPDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVVATSGTFYIGDHVGSFRPG 60 Query: 61 QLVMTGPNLPQNWISDIGRDEVVPVRSLVIQFPEQLVDQCAASIPEMDAIMPLLERSHRG 120 QL+MTGPNLPQNWISDI E VP+RSLVIQFPE +D+ + ++PEM A+ PLLERS RG Sbjct: 61 QLIMTGPNLPQNWISDIPPGEAVPLRSLVIQFPEAFIDEASTAMPEMQALGPLLERSRRG 120 Query: 121 LLFDAATSDTVRPLMQRLIDQRGLKRLALFWEILDVLANSPEPEVLASLSYKLDLSGVNS 180 LLFD ATS VRPLM+RL++ +GL+RLALFWEILD+LAN+PE EVLASLS++LDL+ ++ Sbjct: 121 LLFDDATSARVRPLMERLVEAQGLRRLALFWEILDLLANAPEYEVLASLSFELDLTRIHD 180 Query: 181 SGLNRAIAYLREHLTDDIGEQDLADMVGQNLSTFSRAFKRHTGTTLVRYKNQLRVDLACL 240 G+NRA+ YLREHLT+ I E +LA+MVGQ+ S FSRAFKRHTGTTLVRY+NQLRVDLAC Sbjct: 181 GGINRALGYLREHLTEQIEEGELAEMVGQSQSAFSRAFKRHTGTTLVRYRNQLRVDLACQ 240 Query: 241 ALLNNPEARITDICYETGFSNLSNFNRHFQKIKGMSPSEFRNTFAS 286 LL +P+ ++ +ICYE GFSNLSNFNRHF K+KGMSPS+FR TFA+ Sbjct: 241 MLLTDPDIKVAEICYEVGFSNLSNFNRHFLKLKGMSPSQFRATFAA 286 >ref|ZP_05739396.1| activator protein [Silicibacter sp. TrichCH4B] gb|EEW60467.1| activator protein [Silicibacter sp. TrichCH4B] Length = 294 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 210/294 (71%), Positives = 251/294 (85%) Query: 1 MQPDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVVATSGRFYVGDHIGDFAPG 60 M PDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVV T G FY+GDHIG+F PG Sbjct: 1 MLPDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVVNTHGTFYIGDHIGEFGPG 60 Query: 61 QLVMTGPNLPQNWISDIGRDEVVPVRSLVIQFPEQLVDQCAASIPEMDAIMPLLERSHRG 120 QL+MTGPNLPQNWIS+I ++VP RS VIQFP ++ AS+PEM+AI PLL+RSHRG Sbjct: 61 QLIMTGPNLPQNWISEIEPGQIVPERSFVIQFPAAFIEDACASMPEMEAIRPLLDRSHRG 120 Query: 121 LLFDAATSDTVRPLMQRLIDQRGLKRLALFWEILDVLANSPEPEVLASLSYKLDLSGVNS 180 LLFD AT+D ++PLM L + RGL+RLALFW ILD+LA +P+PEVLASLSY+LDL + Sbjct: 121 LLFDEATADRIKPLMMELFEARGLRRLALFWSILDLLACAPDPEVLASLSYELDLESLQE 180 Query: 181 SGLNRAIAYLREHLTDDIGEQDLADMVGQNLSTFSRAFKRHTGTTLVRYKNQLRVDLACL 240 +G+N+AIAYLRE+LT++I E+DLA MV Q+ S FSR+FKRHTG+TLVRYKNQLRVDLAC Sbjct: 181 NGVNKAIAYLRENLTENIDEKDLAQMVNQSPSAFSRSFKRHTGSTLVRYKNQLRVDLACQ 240 Query: 241 ALLNNPEARITDICYETGFSNLSNFNRHFQKIKGMSPSEFRNTFASNGLFAATG 294 LL PEA++ +ICY+ GFSNLSNFNRHF ++KGMSPS+FR TFA+NG+F+ TG Sbjct: 241 MLLTRPEAKVAEICYDVGFSNLSNFNRHFARLKGMSPSQFRATFAANGVFSETG 294 >ref|ZP_08663633.1| helix-turn-helix domain-containing protein [Paracoccus sp. TRP] Length = 294 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 211/286 (73%), Positives = 247/286 (86%) Query: 1 MQPDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVVATSGRFYVGDHIGDFAPG 60 MQPDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVVATSG FY+GDH+G F PG Sbjct: 1 MQPDLELVHIRKGESFAAWMHGYPFRTVRWHYHPEYEIHLVVATSGTFYIGDHVGSFQPG 60 Query: 61 QLVMTGPNLPQNWISDIGRDEVVPVRSLVIQFPEQLVDQCAASIPEMDAIMPLLERSHRG 120 QL+MTGPNLPQNWISDI E VP+RSLVIQFPE ++ +AS+ EM+A+ PLL+RS RG Sbjct: 61 QLIMTGPNLPQNWISDIAPGEAVPLRSLVIQFPEAFIEGASASMAEMEALRPLLDRSRRG 120 Query: 121 LLFDAATSDTVRPLMQRLIDQRGLKRLALFWEILDVLANSPEPEVLASLSYKLDLSGVNS 180 LLFD TS VRPLM+RL++ +GL+RLALFWEILD LAN+PE EVLASLS++LDL+ ++ Sbjct: 121 LLFDDETSARVRPLMERLVEAQGLRRLALFWEILDHLANAPEYEVLASLSFELDLTRISD 180 Query: 181 SGLNRAIAYLREHLTDDIGEQDLADMVGQNLSTFSRAFKRHTGTTLVRYKNQLRVDLACL 240 G+NRA++YLREHLT+ I E LA+MVGQ+ S FSRAFKRHTGTTLVRY+NQLR+DLAC Sbjct: 181 GGINRALSYLREHLTEQIEEAGLAEMVGQSQSAFSRAFKRHTGTTLVRYRNQLRIDLACQ 240 Query: 241 ALLNNPEARITDICYETGFSNLSNFNRHFQKIKGMSPSEFRNTFAS 286 LL PE ++ +ICYE GFSNLSNFNRHF K+KGMSPS+FR TFA+ Sbjct: 241 MLLTVPEIKVAEICYEVGFSNLSNFNRHFLKLKGMSPSQFRATFAA 286