BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0865.p         (140 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774484.1| hypothetical protein Hsero_1059 [Herbaspiril...   246   7e-64
ref|NP_902898.1| hypothetical protein CV_3228 [Chromobacterium v...   144   4e-33
ref|YP_002354718.1| hypothetical protein Tmz1t_1060 [Thauera sp....   143   7e-33
ref|ZP_04760947.1| isomerase [Acidovorax delafieldii 2AN] >gi|24...   141   4e-32
emb|CBA30954.1| hypothetical protein Csp_C26130 [Curvibacter put...   139   1e-31

>ref|YP_003774484.1| hypothetical protein Hsero_1059 [Herbaspirillum seropedicae SmR1]
 gb|ADJ62576.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 139

 Score =  246 bits (629), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 123/137 (89%), Positives = 131/137 (95%)

Query: 1   MQHLDRLLDWYGALDRSSLERIGEFYSPEALFKDPFNDIKGLRSIRAIFAHMFETTEDPR 60
           M HLDRLL WYGAL+RSSLERIGEFY+PEA+FKDPFNDIKGLRSIR IF HMFETT+DPR
Sbjct: 2   MSHLDRLLQWYGALERSSLERIGEFYAPEAIFKDPFNDIKGLRSIRRIFEHMFETTDDPR 61

Query: 61  FVILERMGQGEQAFATWRFEFRLKGRFYTVLGATHFRFDAAGLVTEHRDYWDAAEELWQK 120
           FVILE+MGQG+Q FATWRFEFRLKGRFYTVLGATHFRFD AGLV+EHRDYWDAAEELWQK
Sbjct: 62  FVILEQMGQGDQGFATWRFEFRLKGRFYTVLGATHFRFDEAGLVSEHRDYWDAAEELWQK 121

Query: 121 LPVIGGPVKWLRGKFRA 137
           LP+IGGPVKWLRGKFRA
Sbjct: 122 LPLIGGPVKWLRGKFRA 138


>ref|NP_902898.1| hypothetical protein CV_3228 [Chromobacterium violaceum ATCC 12472]
 gb|AAQ60893.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 144

 Score =  144 bits (364), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 69/130 (53%), Positives = 90/130 (69%)

Query: 7   LLDWYGALDRSSLERIGEFYSPEALFKDPFNDIKGLRSIRAIFAHMFETTEDPRFVILER 66
           LLDWY  L   +L  IG +Y+ EA FKDPFND +G+  I+A+F HMF+T E PRF ++  
Sbjct: 13  LLDWYQTLTPDTLPDIGRYYAEEARFKDPFNDARGVARIQAVFRHMFQTLEHPRFTVIHA 72

Query: 67  MGQGEQAFATWRFEFRLKGRFYTVLGATHFRFDAAGLVTEHRDYWDAAEELWQKLPVIGG 126
           +  G+QAF TW F F   GR  ++ G +H +FDA G +T HRDYWDAAEEL++K+P+ G 
Sbjct: 73  LRDGDQAFITWDFHFLYAGRQMSIHGGSHLQFDADGKITLHRDYWDAAEELFEKIPLFGL 132

Query: 127 PVKWLRGKFR 136
           PV WLR K R
Sbjct: 133 PVAWLRKKLR 142


>ref|YP_002354718.1| hypothetical protein Tmz1t_1060 [Thauera sp. MZ1T]
 gb|ACK53822.1| protein of unknown function DUF1486 [Thauera sp. MZ1T]
          Length = 159

 Score =  143 bits (361), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 70/132 (53%), Positives = 90/132 (68%)

Query: 6   RLLDWYGALDRSSLERIGEFYSPEALFKDPFNDIKGLRSIRAIFAHMFETTEDPRFVILE 65
           RL  +Y     ++L  + + Y+P+A FKDPFN++ G  +IR IFAHMF TTE PRF + +
Sbjct: 27  RLARFYETFTPAALPGLDQLYAPDARFKDPFNEVAGTAAIRRIFAHMFATTEAPRFEVTD 86

Query: 66  RMGQGEQAFATWRFEFRLKGRFYTVLGATHFRFDAAGLVTEHRDYWDAAEELWQKLPVIG 125
            + QGEQA   W F F L+GR   V G TH RFDA G V  HRDYWDAAEEL++KLP+IG
Sbjct: 87  CIEQGEQAMLGWAFHFALRGRPLVVRGVTHLRFDADGRVVLHRDYWDAAEELYEKLPLIG 146

Query: 126 GPVKWLRGKFRA 137
            P++WLR +  A
Sbjct: 147 APLRWLRRRMSA 158


>ref|ZP_04760947.1| isomerase [Acidovorax delafieldii 2AN]
 gb|EER62264.1| isomerase [Acidovorax delafieldii 2AN]
          Length = 155

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/133 (51%), Positives = 92/133 (69%), Gaps = 4/133 (3%)

Query: 4   LDRLLDWYGALDRSSLERIGEFYSPEALFKDPFNDIKGLRSIRAIFAHMFETTEDPRFVI 63
           ++RL+ WY  L    L  +  +Y+P+A FKDPFND++G+ +I  +FAHMF T + PRFV+
Sbjct: 18  IERLVHWYEHLTPDHLRTLDTYYTPDARFKDPFNDVRGVPAIAQVFAHMFTTLDQPRFVV 77

Query: 64  LERMGQGEQAFATWRFEFRLK----GRFYTVLGATHFRFDAAGLVTEHRDYWDAAEELWQ 119
            ER+ QG+QAF  W F FR +    G    + GATH RF+ +GLV  HRDYWDAAEEL +
Sbjct: 78  TERVVQGQQAFLVWEFHFRFRRWRSGIPQCIGGATHLRFNESGLVAMHRDYWDAAEELHE 137

Query: 120 KLPVIGGPVKWLR 132
           KLPV+G  ++WLR
Sbjct: 138 KLPVVGTLMRWLR 150


>emb|CBA30954.1| hypothetical protein Csp_C26130 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 152

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/136 (50%), Positives = 94/136 (69%), Gaps = 6/136 (4%)

Query: 4   LDRLLDWYGALDRSSLERIGEFYSPEALFKDPFNDIKGLRSIRAIFAHMFETTEDPRFVI 63
           + R++D++  +   ++  +   Y+ +A FKDPFND+ GL  I+ IF+HMF   + PRFV+
Sbjct: 15  VQRMVDFFEHITPDTVAGLSRIYAADARFKDPFNDVIGLADIQRIFSHMFVALDQPRFVV 74

Query: 64  LERMGQGEQAFATWRFEFRLKGRF-----YTVLGATHFRFDAAGLVTEHRDYWDAAEELW 118
           LER+ QG Q F TW F FR K RF       +LGATH  F+ AGLVT HRDYWDAAEEL+
Sbjct: 75  LERVVQGPQCFLTWEFRFRFK-RFSPDTEQVILGATHVVFNEAGLVTLHRDYWDAAEELY 133

Query: 119 QKLPVIGGPVKWLRGK 134
           +KLPV+GG ++WL+ +
Sbjct: 134 EKLPVVGGVMRWLKKR 149