BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0862.p         (189 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774482.1| lipoprotein [Herbaspirillum seropedicae SmR1...   328   2e-88
ref|YP_348539.1| putative lipoprotein [Pseudomonas fluorescens P...   199   2e-49
ref|YP_004714237.1| putative lipoprotein [Pseudomonas stutzeri A...   196   2e-48
gb|EGH14100.1| lipoprotein [Pseudomonas syringae pv. morsprunoru...   194   8e-48
gb|EGH62963.1| lipoprotein [Pseudomonas syringae pv. maculicola ...   193   1e-47

>ref|YP_003774482.1| lipoprotein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62574.1| lipoprotein [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  328 bits (842), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 172/188 (91%), Positives = 180/188 (95%)

Query: 1   MNAKLMRTGLPARLWKGIALALLALVLGGCASQQISDYAGKTPVFDPAVFFKGRTEAWGM 60
           M  KLMR GLPA+LW  + LALLALVLGGCASQQ+SDYAGKTPVFDPAVFFKGRTEAWGM
Sbjct: 1   MQIKLMRQGLPAQLWHWMGLALLALVLGGCASQQLSDYAGKTPVFDPAVFFKGRTEAWGM 60

Query: 61  FQKRGGEVARRFHVVVTGTVDGNTLTLDERFRYDDGETQTRVWTLVRQPDNSWRGRAGDV 120
           FQKRGGEVARRFHVVVTG+V+GNTLTLDERFRYDDGETQTRVWTLVRQPDNSWRGRAGDV
Sbjct: 61  FQKRGGEVARRFHVVVTGSVEGNTLTLDERFRYDDGETQTRVWTLVRQPDNSWRGRAGDV 120

Query: 121 IGEAIGHTAGNALHWNYTLLLPVNDKQYEVQMDDWMYQMDERTLINRTSMSKFGVEVGQV 180
           IGEAIG TAGNALHWNYTLLLPV +KQYE+QMDDWMYQMDERTLINRTSMSKFG+EVGQV
Sbjct: 121 IGEAIGQTAGNALHWNYTLLLPVGEKQYEMQMDDWMYQMDERTLINRTSMSKFGIEVGQV 180

Query: 181 TLFFRKEG 188
           TLFFRKEG
Sbjct: 181 TLFFRKEG 188


>ref|YP_348539.1| putative lipoprotein [Pseudomonas fluorescens Pf0-1]
 gb|ABA74549.1| putative lipoprotein [Pseudomonas fluorescens Pf0-1]
          Length = 180

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 97/162 (59%), Positives = 112/162 (69%)

Query: 27  LGGCASQQISDYAGKTPVFDPAVFFKGRTEAWGMFQKRGGEVARRFHVVVTGTVDGNTLT 86
           +  C S  +S YA + P  D   FF    +AWGMFQKRGGEV +RF V +    +GN L 
Sbjct: 14  IASCTSVDVSRYADQQPTLDLQRFFSQPVKAWGMFQKRGGEVTKRFEVNIISRREGNNLI 73

Query: 87  LDERFRYDDGETQTRVWTLVRQPDNSWRGRAGDVIGEAIGHTAGNALHWNYTLLLPVNDK 146
           LDERF Y DG  Q RVWTL  + +  W GRAGDV+G A G  AGN LHW Y L +PV+D 
Sbjct: 74  LDERFLYSDGTRQHRVWTLTPEGEGRWSGRAGDVVGVAQGQVAGNTLHWRYRLNVPVDDS 133

Query: 147 QYEVQMDDWMYQMDERTLINRTSMSKFGVEVGQVTLFFRKEG 188
            YE+ MDDWMY MDE TLINRTSMSKFGVEVGQVTLFFR++G
Sbjct: 134 TYEMSMDDWMYLMDEDTLINRTSMSKFGVEVGQVTLFFRRQG 175


>ref|YP_004714237.1| putative lipoprotein [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
 gb|AEJ05148.1| putative lipoprotein [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
          Length = 175

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 92/152 (60%), Positives = 109/152 (71%)

Query: 35  ISDYAGKTPVFDPAVFFKGRTEAWGMFQKRGGEVARRFHVVVTGTVDGNTLTLDERFRYD 94
           +  Y  + P  D   +F G  +AWGMFQKR GEV +RFHV + G++DG+ L LDE FRY 
Sbjct: 21  VEHYRDEEPQLDLRKYFVGTVDAWGMFQKRSGEVVKRFHVEIEGSLDGDKLILDEHFRYS 80

Query: 95  DGETQTRVWTLVRQPDNSWRGRAGDVIGEAIGHTAGNALHWNYTLLLPVNDKQYEVQMDD 154
           DG TQ RVWTL  +    WRG A DV+GEA+G  AGNAL W Y L LPV+DK Y+V +DD
Sbjct: 81  DGTTQQRVWTLTEKSPGHWRGTAADVVGEAVGEVAGNALRWRYVLSLPVDDKVYDVHLDD 140

Query: 155 WMYQMDERTLINRTSMSKFGVEVGQVTLFFRK 186
           WMY +DE TL NR+ MSKFGVEVGQVTLFFRK
Sbjct: 141 WMYLIDENTLANRSFMSKFGVEVGQVTLFFRK 172


>gb|EGH14100.1| lipoprotein [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 177

 Score =  194 bits (492), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 93/175 (53%), Positives = 115/175 (65%)

Query: 14  LWKGIALALLALVLGGCASQQISDYAGKTPVFDPAVFFKGRTEAWGMFQKRGGEVARRFH 73
           L K + +  + LVL GC    +S Y+ +TP  D   +F GR EAWGMFQKR GEV +RF 
Sbjct: 2   LKKWMVMLCMGLVLSGCGGVPVSHYSQETPKLDLRKYFTGRVEAWGMFQKRSGEVTKRFT 61

Query: 74  VVVTGTVDGNTLTLDERFRYDDGETQTRVWTLVRQPDNSWRGRAGDVIGEAIGHTAGNAL 133
           VV+ G  +G  L + E F Y DG  Q R W L       W+G AGDV+GEA G  AGN+ 
Sbjct: 62  VVIDGHSEGEVLVMHEAFSYSDGTKQVREWRLRPDGPGRWKGTAGDVVGEAYGEVAGNSF 121

Query: 134 HWNYTLLLPVNDKQYEVQMDDWMYQMDERTLINRTSMSKFGVEVGQVTLFFRKEG 188
           HWNY L LPV+   Y+V +DDWMY +DE+TL NR+SM+K GVEVGQ+TLFFRK G
Sbjct: 122 HWNYVLRLPVDGTAYDVSLDDWMYMIDEQTLANRSSMTKLGVEVGQITLFFRKTG 176


>gb|EGH62963.1| lipoprotein [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 184

 Score =  193 bits (491), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 93/175 (53%), Positives = 114/175 (65%)

Query: 14  LWKGIALALLALVLGGCASQQISDYAGKTPVFDPAVFFKGRTEAWGMFQKRGGEVARRFH 73
           L K + L  L L L GC    +S Y+ + P  D   +F GR EAWGMFQKR GEV +RF 
Sbjct: 9   LKKWMVLLCLGLALSGCGGVPVSHYSQEAPKLDLRKYFTGRVEAWGMFQKRSGEVTKRFT 68

Query: 74  VVVTGTVDGNTLTLDERFRYDDGETQTRVWTLVRQPDNSWRGRAGDVIGEAIGHTAGNAL 133
           VV+ G  +G  L + E F Y DG  Q R W L       W+G AGDV+GEA G  AGN+ 
Sbjct: 69  VVIDGHSEGEVLVMHEAFSYSDGTKQVREWRLRPDGPGRWKGTAGDVVGEAYGEVAGNSF 128

Query: 134 HWNYTLLLPVNDKQYEVQMDDWMYQMDERTLINRTSMSKFGVEVGQVTLFFRKEG 188
           HWNY L LPV+  +Y+V +DDWMY +DE+T+ NR+SMSK GVEVGQ+TLFFRK G
Sbjct: 129 HWNYVLRLPVDGTEYDVSLDDWMYLIDEQTMANRSSMSKLGVEVGQITLFFRKTG 183