BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0860.p (284 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774480.1| hypothetical protein Hsero_1055 [Herbaspiril... 495 e-138 ref|ZP_03697363.1| protein of unknown function DUF1365 [Lutiella... 296 2e-78 ref|YP_002795324.1| hypothetical protein LHK_01325 [Laribacter h... 286 2e-75 ref|YP_004847642.1| hypothetical protein NH8B_2414 [Pseudogulben... 282 4e-74 ref|ZP_06845042.1| protein of unknown function DUF1365 [Burkhold... 280 1e-73 >ref|YP_003774480.1| hypothetical protein Hsero_1055 [Herbaspirillum seropedicae SmR1] gb|ADJ62572.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 283 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 251/284 (88%), Positives = 260/284 (91%), Gaps = 1/284 (0%) Query: 1 MSTSLTSRTDAPALLLSGQVMHQRLRPVLHKFVYPVFCVRLDLARLNEAGNAWFGVDRRR 60 MS SR APALLLSGQVMHQRLRPVLHKFVYPVFCVRLDLARL EAGNAWFGVDRRR Sbjct: 1 MSNVQPSRP-APALLLSGQVMHQRLRPVLHKFVYPVFCVRLDLARLAEAGNAWFGVDRRR 59 Query: 61 LMCVRTRDYGPRDGSDLAGWVRGHLQQAGLPHDGAIWLQTFPRLFGFVFNPVSFFLCHDR 120 LMCVRTRDYGPR+GSDL WVRGHLQQAGLP DGAIWLQTFPRLFGFVFNPVSFFLCHDR Sbjct: 60 LMCVRTRDYGPRNGSDLMQWVRGHLQQAGLPDDGAIWLQTFPRLFGFVFNPVSFFLCHDR 119 Query: 121 EGQLRAVLAEVNNTFGETQHYLLSAPGQGVIDEHTRLVCNKLMHVSPFCEVSGFYRFRFR 180 EG+LRAVLAEVNNTFGETQHYLLSAPGQGVIDEHTRLVC+KLMHVSPFCEV GFYRFRFR Sbjct: 120 EGRLRAVLAEVNNTFGETQHYLLSAPGQGVIDEHTRLVCDKLMHVSPFCEVRGFYRFRFR 179 Query: 181 DQARHEDAGGNTAFVGIDYYDHGHPSEVAQGLQPLMRTSVGGHLHPLTAATAFGALCAQP 240 DQ R A +TAFVGIDYYDHG P+EV QGLQPLMRTS+GGHL PLTAA+AF ALCAQP Sbjct: 180 DQPRRGQADQHTAFVGIDYYDHGQPAEVLQGLQPLMRTSIGGHLQPLTAASAFAALCAQP 239 Query: 241 FLTLGVVARIHWQALLLWRKRVPWFSKPERVAAAGTSSGKETLS 284 LTLGVVARIHWQALLLWRKRVPWFSKPER AAAG ++GKETLS Sbjct: 240 LLTLGVVARIHWQALLLWRKRVPWFSKPERAAAAGPTTGKETLS 283 >ref|ZP_03697363.1| protein of unknown function DUF1365 [Lutiella nitroferrum 2002] gb|EEG09849.1| protein of unknown function DUF1365 [Lutiella nitroferrum 2002] Length = 258 Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 152/269 (56%), Positives = 183/269 (68%), Gaps = 17/269 (6%) Query: 13 ALLLSGQVMHQRLRPVLHKFVYPVFCVRLDLARLNEAGNAWFGVDRRRLMCVRTRDYGPR 72 A L+ G VMHQRLRP H+F+YPVF VRL L+ L+ GNAWFGVDRRR M VRT+DYGPR Sbjct: 4 AYLIKGVVMHQRLRPARHRFLYPVFAVRLRLSALDRLGNAWFGVDRRRPMSVRTKDYGPR 63 Query: 73 DGSDLAGWVRGHLQQAGLPHDGAIWLQTFPRLFGFVFNPVSFFLCHDREGQLRAVLAEVN 132 DGS L W+R L +AGLPHDG +WLQTFPRLFG+ FNPVSF+ CHD GQL AVLA+VN Sbjct: 64 DGSPLLPWIRQQLAEAGLPHDGEVWLQTFPRLFGYAFNPVSFWYCHDAAGQLVAVLADVN 123 Query: 133 NTFGETQHYLLSAPGQGVIDEHTRLVCNKLMHVSPFCEVSGFYRFRFRDQARHEDAGGNT 192 NTFGE YLL+ I TRL C K +HVSPFC+V G YRFR ++A + Sbjct: 124 NTFGEHHAYLLANKAGEPITAGTRLTCRKQLHVSPFCQVEGHYRFRLAEKA-------DR 176 Query: 193 AFVGIDYYDHGHPSEVAQGLQPLMRTSVGGHLHPLTAATAFGALCAQPFLTLGVVARIHW 252 + IDY+D QGL L+ TS+ G + PLT+ TA AL QP LT +++RIHW Sbjct: 177 MLMRIDYHD-------TQGL--LLNTSISGRMTPLTSTTALAALLRQPLLTFAIISRIHW 227 Query: 253 QALLLWRKRVPWFSKPERVAAAGTSSGKE 281 QA LWRK+VP+F KP R A + G+E Sbjct: 228 QAWRLWRKKVPFFGKP-RPPATRLTHGEE 255 >ref|YP_002795324.1| hypothetical protein LHK_01325 [Laribacter hongkongensis HLHK9] gb|ACO74315.1| DUF1365 domain containing protein [Laribacter hongkongensis HLHK9] Length = 258 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 149/269 (55%), Positives = 185/269 (68%), Gaps = 17/269 (6%) Query: 13 ALLLSGQVMHQRLRPVLHKFVYPVFCVRLDLARLNEAGNAWFGVDRRRLMCVRTRDYGPR 72 A L+ G VMH+RLRPV H+F+YPVF VRL L+ L++ GNAWFGVDR RLM VRTRDYGPR Sbjct: 4 AYLVRGMVMHRRLRPVRHRFLYPVFAVRLRLSALDDTGNAWFGVDRCRLMSVRTRDYGPR 63 Query: 73 DGSDLAGWVRGHLQQAGLPHDGAIWLQTFPRLFGFVFNPVSFFLCHDREGQLRAVLAEVN 132 DGS L W+ L +AGLPHDG +WLQTFPRLFG+VFNPVSF+ CHD EG+L AVLA+VN Sbjct: 64 DGSPLLPWIHRQLAEAGLPHDGEVWLQTFPRLFGYVFNPVSFWYCHDAEGRLVAVLADVN 123 Query: 133 NTFGETQHYLLSAPGQGVIDEHTRLVCNKLMHVSPFCEVSGFYRFRFRDQARHEDAGGNT 192 NTFGE YLL+ + + L C K +HVSPFC V G YRFR ++ H Sbjct: 124 NTFGEHHAYLLANRNGEPLMSGSVLTCLKCLHVSPFCRVEGHYRFRLTEKPDH------- 176 Query: 193 AFVGIDYYDHGHPSEVAQGLQPLMRTSVGGHLHPLTAATAFGALCAQPFLTLGVVARIHW 252 + IDY+D A+G ++ T+V G + PLT+A+A AL QP LT+ V+ RIHW Sbjct: 177 MLMRIDYHD-------AEG--AVLNTAVSGRMTPLTSASAGAALLRQPLLTVSVIVRIHW 227 Query: 253 QALLLWRKRVPWFSKPERVAAAGTSSGKE 281 QAL LW K+VP+F KP R A+ + G+E Sbjct: 228 QALRLWLKKVPFFGKP-RPPASTLTHGQE 255 >ref|YP_004847642.1| hypothetical protein NH8B_2414 [Pseudogulbenkiania sp. NH8B] dbj|BAK77228.1| protein of unknown function [Pseudogulbenkiania sp. NH8B] Length = 247 Score = 282 bits (722), Expect = 4e-74, Method: Composition-based stats. Identities = 145/261 (55%), Positives = 176/261 (67%), Gaps = 17/261 (6%) Query: 21 MHQRLRPVLHKFVYPVFCVRLDLARLNEAGNAWFGVDRRRLMCVRTRDYGPRDGSDLAGW 80 MHQRLRP H+F+YPVF VRL L+ L+ GNAWFGVDRRR M VRT+DYGPRDGS L W Sbjct: 1 MHQRLRPARHRFLYPVFAVRLRLSALDRLGNAWFGVDRRRPMSVRTKDYGPRDGSPLLPW 60 Query: 81 VRGHLQQAGLPHDGAIWLQTFPRLFGFVFNPVSFFLCHDREGQLRAVLAEVNNTFGETQH 140 +R L +AGLPHDG +WLQTFPRLFG+ FNPVSF+ CHD G+L AVLA+VNNTFGE Sbjct: 61 IRQQLAEAGLPHDGEVWLQTFPRLFGYAFNPVSFWYCHDAAGRLVAVLADVNNTFGEHHA 120 Query: 141 YLLSAPGQGVIDEHTRLVCNKLMHVSPFCEVSGFYRFRFRDQARHEDAGGNTAFVGIDYY 200 YLL+ I + L C K +HVSPFC+V G YRFR ++A + + IDY+ Sbjct: 121 YLLANKAGEPITAGSTLTCRKQLHVSPFCQVEGHYRFRLAEKA-------DRMLMRIDYH 173 Query: 201 DHGHPSEVAQGLQPLMRTSVGGHLHPLTAATAFGALCAQPFLTLGVVARIHWQALLLWRK 260 D QGL L+ TS+ G + PLT TA AL QP LT +++RIHWQA LWRK Sbjct: 174 D-------TQGL--LLNTSISGRMTPLTPTTALAALLRQPLLTFAIISRIHWQAWRLWRK 224 Query: 261 RVPWFSKPERVAAAGTSSGKE 281 +VP+F KP R A + G+E Sbjct: 225 KVPFFGKP-RPPATRLTHGEE 244 >ref|ZP_06845042.1| protein of unknown function DUF1365 [Burkholderia sp. Ch1-1] gb|EFG67337.1| protein of unknown function DUF1365 [Burkholderia sp. Ch1-1] Length = 288 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 152/281 (54%), Positives = 187/281 (66%), Gaps = 23/281 (8%) Query: 9 TDAPALLLSGQVMHQRLRPVLHKFVYPVFCVRLDLARLNEAGNAWFGVDRRRLMCVRTRD 68 TD A LL+G+VMH+RLRP H+F YPVF VR DL RL + WFG+DR R + + RD Sbjct: 15 TDPAAWLLTGKVMHERLRPKHHRFTYPVFYVRCDLDRLTALDSGWFGIDRWRPLGLHQRD 74 Query: 69 YGPRDGSDLAGWVRGHLQQAGLPH-DGAIWLQTFPRLFGFVFNPVSFFLCHDREGQLRAV 127 +GPRDGSDLA W+R L QAG+ +G IWLQ FPR+FG+ FNPVSF+ CHDREG+LRA+ Sbjct: 75 HGPRDGSDLATWMRAQLSQAGVEEANGRIWLQAFPRVFGYAFNPVSFWFCHDREGRLRAL 134 Query: 128 LAEVNNTFGETQHYLLSAPGQGVIDEHTRLVCNKLMHVSPFCEVSGFYRFRFRDQARHED 187 LAEV NTFGE YLLSA G I TRL+C K++HVSPFC V G Y FR ++ Sbjct: 135 LAEVRNTFGERHSYLLSADGNAPITADTRLMCRKVLHVSPFCRVEGGYTFRIKESL---- 190 Query: 188 AGGNTAFVGIDYYDHGHPSEVAQGLQPLMRTSVGGHLHPLTAATAFGALCAQPFLTLGVV 247 N+A V IDY+D A GL L+RT++GG L PLT ATA AL QP LT+GVV Sbjct: 191 ---NSASVSIDYHD-------ADGL--LLRTALGGRLTPLTRATALAALLRQPLLTVGVV 238 Query: 248 ARIHWQALLLWRKRVPWFSK---PERVAAAG---TSSGKET 282 RIHWQAL L + P++ K P + A A T++G+ T Sbjct: 239 TRIHWQALRLALRNAPFYGKNPAPGQTADASADPTATGQPT 279