BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0859.p (454 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774479.1| dehydrogenase [Herbaspirillum seropedicae Sm... 819 0.0 ref|YP_001894688.1| FAD dependent oxidoreductase [Burkholderia p... 541 e-151 ref|YP_557604.1| putative dehydrogenase [Burkholderia xenovorans... 538 e-150 gb|EGD05972.1| amine oxidase [Burkholderia sp. TJI49] 533 e-149 ref|ZP_06845041.1| FAD dependent oxidoreductase [Burkholderia sp... 528 e-147 >ref|YP_003774479.1| dehydrogenase [Herbaspirillum seropedicae SmR1] gb|ADJ62571.1| dehydrogenase protein [Herbaspirillum seropedicae SmR1] Length = 428 Score = 819 bits (2116), Expect = 0.0, Method: Composition-based stats. Identities = 390/424 (91%), Positives = 408/424 (96%) Query: 30 TGQRIAVIGAGISGLASAYLLARKHQVVLFESAPTLGGHANTVEIAPEGVPFPVDTGFLV 89 TGQRIAVIGAGISGLASAYLLAR+HQVVL+E+APTLGGHANTV+IAPEGVPF VDTGFLV Sbjct: 4 TGQRIAVIGAGISGLASAYLLARQHQVVLYEAAPTLGGHANTVDIAPEGVPFAVDTGFLV 63 Query: 90 FNDWTYPNLIALFEELKVETYDTDMSFGVSMDEGSFEWAGTNLDTVFAQRKRLLQPSFLG 149 FNDWTYPNLIALF+ELKVETYDTDMSFGVSMD+G FEWAGTNLDTVFAQRKRLLQP+FLG Sbjct: 64 FNDWTYPNLIALFKELKVETYDTDMSFGVSMDQGQFEWAGTNLDTVFAQRKRLLQPAFLG 123 Query: 150 MLRDILRFNRSAHANLAACEGRPVTLRQLLEEGGYGVLFGDAYLIPMAAAIWSSSPSDIL 209 MLRDILRFNR+AHANLAACEGRPV+LRQLL EGGYG LF DAYLIPMAAAIWSSSP+DIL Sbjct: 124 MLRDILRFNRAAHANLAACEGRPVSLRQLLREGGYGALFSDAYLIPMAAAIWSSSPADIL 183 Query: 210 DFPAATFLRFCINHGLLQVNNRPRWRTVRGGSREYVRRIAATLDDVRLGSRLTSVTRNEQ 269 DFPAATFLRFCINHGLLQVNNRPRWRTVR GSREYVRRIAATLDDVRLGSRL SV RNEQ Sbjct: 184 DFPAATFLRFCINHGLLQVNNRPRWRTVRNGSREYVRRIAATLDDVRLGSRLESVVRNEQ 243 Query: 270 GVLVRSGGAEPREEQFDAVVFATHAPQTLALLQDATIEEHQVLSAVRYQANTAWLHSDVS 329 GVLVRS G PREEQFDAVVFATHAPQTLALLQDATIEEHQVLSAVRYQANTAWLHSD+S Sbjct: 244 GVLVRSAGPAPREEQFDAVVFATHAPQTLALLQDATIEEHQVLSAVRYQANTAWLHSDIS 303 Query: 330 LMPQLDKVWSAWNYLGSRHSDGSRAVCVSYWLNRLQDLPCKTDIVLTLNPPQPPNPATVM 389 LMPQ +KVWSAWNYLGSR DGSRAVCVSYWLNRLQDLPC++D+VLTLNPPQPPNPATVM Sbjct: 304 LMPQREKVWSAWNYLGSRKDDGSRAVCVSYWLNRLQDLPCRSDVVLTLNPPQPPNPATVM 363 Query: 390 GRFDYEHPVFDQPAIDAQRRLPEIQGKHRAWFAGAWTGYGFHEDGLKSALRVIRDFGVTP 449 GRFDYEHPVFDQPAIDAQRRLP +QG+HRAWFAGAWTGYGFHEDGLKSALRVI+DFGV P Sbjct: 364 GRFDYEHPVFDQPAIDAQRRLPHLQGRHRAWFAGAWTGYGFHEDGLKSALRVIKDFGVLP 423 Query: 450 DWAS 453 DWAS Sbjct: 424 DWAS 427 >ref|YP_001894688.1| FAD dependent oxidoreductase [Burkholderia phytofirmans PsJN] gb|ACD15464.1| FAD dependent oxidoreductase [Burkholderia phytofirmans PsJN] Length = 433 Score = 541 bits (1393), Expect = e-151, Method: Composition-based stats. Identities = 268/422 (63%), Positives = 322/422 (76%), Gaps = 3/422 (0%) Query: 31 GQRIAVIGAGISGLASAYLLARKHQVVLFESAPTLGGHANTVEIAPEGVPFPVDTGFLVF 90 G R+AVIGAGISGLASAYLLAR H+V LFESA LGGH NTV++ +G PVDTGFLVF Sbjct: 13 GSRVAVIGAGISGLASAYLLARHHRVTLFESAAYLGGHTNTVDVTLDGHTHPVDTGFLVF 72 Query: 91 NDWTYPNLIALFEELKVETYDTDMSFGVSMDEGSFEWAGTNLDTVFAQRKRLLQPSFLGM 150 ND TYPNLIALF EL V+++ +DM+F VS+DEG EWAGT+L+TVFAQR+ L P+F+GM Sbjct: 73 NDRTYPNLIALFAELGVQSHPSDMTFSVSLDEGRLEWAGTSLNTVFAQRRNLFSPTFIGM 132 Query: 151 LRDILRFNRSAHANLAACEGRPVTLRQLLEEGGYGVLFGDAYLIPMAAAIWSSSPSDILD 210 LRDI+RFN SA NL ++ +LL EGGYG F YL+PMAAAIWSS+ +DIL Sbjct: 133 LRDIMRFNGSAQRNLELAIATRASMGELLTEGGYGGAFQRQYLLPMAAAIWSSATADILA 192 Query: 211 FPAATFLRFCINHGLLQVNNRPRWRTVRGGSREYVRRIAATLDDVRLGSRLTSVTRNEQG 270 FPA TFLRFC+NH LLQVN RP+WRTV GG REYV+RI +TLDDVR+G+ + V R+ G Sbjct: 193 FPATTFLRFCLNHALLQVNRRPQWRTVVGGGREYVKRITSTLDDVRIGTAVRGVRRDTDG 252 Query: 271 VLVRSGGAEPREEQFDAVVFATHAPQTLALLQDATIEEHQVLSAVRYQANTAWLHSDVSL 330 V V + + E+FDA+V ATHAP TL LLQDA +E VL+AVRYQ N A LH+D +L Sbjct: 253 VDVFT---DHGSERFDALVLATHAPTTLRLLQDADQDERGVLAAVRYQPNVAVLHTDTNL 309 Query: 331 MPQLDKVWSAWNYLGSRHSDGSRAVCVSYWLNRLQDLPCKTDIVLTLNPPQPPNPATVMG 390 +P+ +VWSAWNYLGSR +DG+ VCVSY +N+LQ LP +T +V+TLNP P P T + Sbjct: 310 LPRRQRVWSAWNYLGSRSADGTHPVCVSYLVNQLQPLPFRTPLVVTLNPVTQPAPGTELR 369 Query: 391 RFDYEHPVFDQPAIDAQRRLPEIQGKHRAWFAGAWTGYGFHEDGLKSALRVIRDFGVTPD 450 RF Y+HP+FD AIDAQ RLP +QGK R WFAGAWTGYGFHEDGLKSALRV DF +P Sbjct: 370 RFVYDHPLFDLAAIDAQHRLPSLQGKRRTWFAGAWTGYGFHEDGLKSALRVAADFDASPA 429 Query: 451 WA 452 WA Sbjct: 430 WA 431 >ref|YP_557604.1| putative dehydrogenase [Burkholderia xenovorans LB400] gb|ABE29552.1| Putative dehydrogenase [Burkholderia xenovorans LB400] Length = 433 Score = 538 bits (1385), Expect = e-150, Method: Composition-based stats. Identities = 269/424 (63%), Positives = 319/424 (75%), Gaps = 3/424 (0%) Query: 31 GQRIAVIGAGISGLASAYLLARKHQVVLFESAPTLGGHANTVEIAPEGVPFPVDTGFLVF 90 G R+AVIGAGISGLASAYLLAR H+V LFESA LGGH NTV++ +G PVDTGFLVF Sbjct: 13 GSRVAVIGAGISGLASAYLLARNHRVTLFESAGYLGGHTNTVDVTLDGHRHPVDTGFLVF 72 Query: 91 NDWTYPNLIALFEELKVETYDTDMSFGVSMDEGSFEWAGTNLDTVFAQRKRLLQPSFLGM 150 ND TYPNLIALF EL V ++ +DM+F VS+D G EWAGT+L+TVFAQR+ L P+F+GM Sbjct: 73 NDRTYPNLIALFAELGVRSHPSDMTFSVSLDAGRLEWAGTSLNTVFAQRRNLFSPTFIGM 132 Query: 151 LRDILRFNRSAHANLAACEGRPVTLRQLLEEGGYGVLFGDAYLIPMAAAIWSSSPSDILD 210 LRDI+RFN SA NL ++ +LL E GYG F YL+PMAAAIWSS+ +DIL Sbjct: 133 LRDIVRFNGSAQRNLELAIQTRASMGELLTESGYGGAFQRQYLLPMAAAIWSSATADILA 192 Query: 211 FPAATFLRFCINHGLLQVNNRPRWRTVRGGSREYVRRIAATLDDVRLGSRLTSVTRNEQG 270 FPA TFLRFC+NH LLQVN+RP+WRTV GG REYVR+IA TLDDVR+G+ + V R G Sbjct: 193 FPATTFLRFCLNHALLQVNHRPQWRTVAGGGREYVRQIAGTLDDVRIGTAVRGVRRGADG 252 Query: 271 VLVRSGGAEPREEQFDAVVFATHAPQTLALLQDATIEEHQVLSAVRYQANTAWLHSDVSL 330 V V + G E+FDA+V ATHAP TL LL+D +E VL+AVRYQ N A LH+DV+L Sbjct: 253 VDVYTDGG---TERFDALVLATHAPTTLRLLEDVDQDERGVLAAVRYQPNVAVLHTDVNL 309 Query: 331 MPQLDKVWSAWNYLGSRHSDGSRAVCVSYWLNRLQDLPCKTDIVLTLNPPQPPNPATVMG 390 +P+ +VWSAWNYLGSR DG+ VCVSY +N+LQ LP T +V+TLNP P P T + Sbjct: 310 LPRRQRVWSAWNYLGSRGVDGTHPVCVSYLVNQLQPLPFSTPLVVTLNPVAQPAPGTELR 369 Query: 391 RFDYEHPVFDQPAIDAQRRLPEIQGKHRAWFAGAWTGYGFHEDGLKSALRVIRDFGVTPD 450 RF Y+HP+FD AIDAQ RLP +QGK R WFAGAWTGYGFHEDGLKSALRV DFG P Sbjct: 370 RFVYDHPLFDLAAIDAQHRLPSLQGKRRTWFAGAWTGYGFHEDGLKSALRVAADFGALPA 429 Query: 451 WASP 454 WA+P Sbjct: 430 WATP 433 >gb|EGD05972.1| amine oxidase [Burkholderia sp. TJI49] Length = 428 Score = 533 bits (1374), Expect = e-149, Method: Composition-based stats. Identities = 263/426 (61%), Positives = 323/426 (75%), Gaps = 4/426 (0%) Query: 31 GQRIAVIGAGISGLASAYLLARKHQVVLFESAPTLGGHANTVEIAPEGVPFPVDTGFLVF 90 G+RIAV+GAGI+GLASAYLLAR+H+V LFE+A LGGH +TV++ +G PVDTGFLVF Sbjct: 5 GRRIAVVGAGIAGLASAYLLARRHRVTLFEAADYLGGHTHTVDVDLDGARHPVDTGFLVF 64 Query: 91 NDWTYPNLIALFEELKVETYDTDMSFGVSMDEGSFEWAGTNLDTVFAQRKRLLQPSFLGM 150 ND TYPNLIALF+EL V + TDMSF VS+D G EWAG+NL+TVFAQR+ L P+FLGM Sbjct: 65 NDRTYPNLIALFDELGVAAHSTDMSFSVSVDGGRLEWAGSNLNTVFAQRRNLFSPTFLGM 124 Query: 151 LRDILRFNRSAHANLAACEGRPVTLRQLLEEGGYGVLFGDAYLIPMAAAIWSSSPSDILD 210 LRDILRFN SA +L + + +++ +LL GGYG F YL+PMAAAIWSS+ +DIL Sbjct: 125 LRDILRFNASAQDHLESASRQRLSVGELLTAGGYGASFQHHYLLPMAAAIWSSAANDILR 184 Query: 211 FPAATFLRFCINHGLLQVNNRPRWRTVRGGSREYVRRIAATLDDVRLGSRLTSVTRNEQG 270 FPAATFLRFC+NH LLQVNNRP WRTV GG+R+YV RIAATLDDVR+ + + ++ R++ G Sbjct: 185 FPAATFLRFCLNHALLQVNNRPTWRTVAGGARQYVERIAATLDDVRVNTPVRAIRRDDAG 244 Query: 271 VLVRSGGAEPREEQFDAVVFATHAPQTLALLQDATIEEHQVLSAVRYQANTAWLHSDVSL 330 V V + A E+FDA+V A HAP +L LL DA+ E VL AVRYQ N A LH+D +L Sbjct: 245 VTVATDTAG--HERFDAIVLACHAPTSLRLLADASKAERDVLGAVRYQHNVAVLHTDTAL 302 Query: 331 MPQLDKVWSAWNYLGS--RHSDGSRAVCVSYWLNRLQDLPCKTDIVLTLNPPQPPNPATV 388 +P+ +VWSAWNYLG R + G VCVSY LN+LQ LP ++ +V+TLNP P P T Sbjct: 303 LPRRRRVWSAWNYLGGRPRRTGGESPVCVSYLLNQLQPLPFRSPVVVTLNPVDEPAPDTQ 362 Query: 389 MGRFDYEHPVFDQPAIDAQRRLPEIQGKHRAWFAGAWTGYGFHEDGLKSALRVIRDFGVT 448 +GR+DYEHP+ D A+DAQ RLP +QG+ WFAGAWTGYGFHEDGLKSALRV R FG+ Sbjct: 363 LGRYDYEHPLLDLAAVDAQHRLPMLQGRRNTWFAGAWTGYGFHEDGLKSALRVARSFGIA 422 Query: 449 PDWASP 454 P WA P Sbjct: 423 PSWARP 428 >ref|ZP_06845041.1| FAD dependent oxidoreductase [Burkholderia sp. Ch1-1] gb|EFG67336.1| FAD dependent oxidoreductase [Burkholderia sp. Ch1-1] Length = 433 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 263/422 (62%), Positives = 315/422 (74%), Gaps = 3/422 (0%) Query: 31 GQRIAVIGAGISGLASAYLLARKHQVVLFESAPTLGGHANTVEIAPEGVPFPVDTGFLVF 90 G R+AVIGAGISGLASAYLL R H+V LFESA LGGH NTV++ +G PVDTGFLVF Sbjct: 13 GSRVAVIGAGISGLASAYLLTRNHRVTLFESAGYLGGHTNTVDVTLDGHSHPVDTGFLVF 72 Query: 91 NDWTYPNLIALFEELKVETYDTDMSFGVSMDEGSFEWAGTNLDTVFAQRKRLLQPSFLGM 150 ND TYPNLIAL EL V ++ +DM+F VS+D G EWAG++L+TVFAQR+ L P+F+GM Sbjct: 73 NDRTYPNLIALLAELGVRSHPSDMTFSVSLDAGRLEWAGSSLNTVFAQRRNLFSPTFIGM 132 Query: 151 LRDILRFNRSAHANLAACEGRPVTLRQLLEEGGYGVLFGDAYLIPMAAAIWSSSPSDILD 210 LRDI+RFN A NL ++ +LL EGGYG F YL+PMAAAIWSS+ +DIL Sbjct: 133 LRDIVRFNGGAQRNLELAIQTRASMGELLTEGGYGGAFQRQYLLPMAAAIWSSATADILA 192 Query: 211 FPAATFLRFCINHGLLQVNNRPRWRTVRGGSREYVRRIAATLDDVRLGSRLTSVTRNEQG 270 FPAATFLRFC+NH LLQVN RP+W+TV GG REYVR+IA TLDDVR+G+ + V R+ G Sbjct: 193 FPAATFLRFCLNHALLQVNRRPQWKTVAGGGREYVRQIAGTLDDVRIGTAVRGVRRDADG 252 Query: 271 VLVRSGGAEPREEQFDAVVFATHAPQTLALLQDATIEEHQVLSAVRYQANTAWLHSDVSL 330 V V + G E+FDA+V ATHAP TL LL+DA +E VL+AVRYQ N A LH+D +L Sbjct: 253 VDVFTDGG---TERFDALVLATHAPTTLRLLEDADQDERGVLAAVRYQPNVAVLHTDTNL 309 Query: 331 MPQLDKVWSAWNYLGSRHSDGSRAVCVSYWLNRLQDLPCKTDIVLTLNPPQPPNPATVMG 390 +P+ +VWSAWNYLGSR DG+ VCVSY +N+LQ LP T +V+TLNP P P + Sbjct: 310 LPRRQRVWSAWNYLGSRSVDGTHPVCVSYLVNQLQPLPFSTPLVVTLNPVTQPAPGAELR 369 Query: 391 RFDYEHPVFDQPAIDAQRRLPEIQGKHRAWFAGAWTGYGFHEDGLKSALRVIRDFGVTPD 450 RF Y+HP+FD AIDAQ RLP +QGK R WFAGAWTGYGFHEDGLKSALRV DF +P Sbjct: 370 RFVYDHPLFDLAAIDAQHRLPSLQGKRRTWFAGAWTGYGFHEDGLKSALRVAADFDASPA 429 Query: 451 WA 452 WA Sbjct: 430 WA 431