BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0858.p (202 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774478.1| TetR family transcription regulator protein ... 355 3e-96 ref|YP_293277.1| regulatory protein, TetR [Ralstonia eutropha JM... 270 1e-70 ref|NP_902893.1| transcription regulator, TetR family [Chromobac... 248 5e-64 ref|YP_002795326.1| transcription regulator, TetR Family [Lariba... 245 2e-63 ref|YP_004847640.1| TetR family transcriptional regulator [Pseud... 244 4e-63 >ref|YP_003774478.1| TetR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62570.1| TetR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 206 Score = 355 bits (910), Expect = 3e-96, Method: Composition-based stats. Identities = 182/202 (90%), Positives = 191/202 (94%) Query: 1 MSIFGKLSFKDQAYKLRENAILDAATSVLGSKGYDLMTMDDVAGAVGISKPSLYKHFKSK 60 MSIFGKLSFKDQA+KLRENAILDAATSVLGSKGYDLMTMDDVAGAVGISKPSLYKHFKSK Sbjct: 1 MSIFGKLSFKDQAFKLRENAILDAATSVLGSKGYDLMTMDDVAGAVGISKPSLYKHFKSK 60 Query: 61 EELIGETMIRLVDGAIDQLAQLEPIPSPRGKLEAMLEWALRVRLEGGLPFLPSTSAHVRE 120 EELIGETMIRL+DGAIDQLAQLE I R KLEAMLEWALRVRLEGGLPFLPSTSA VR+ Sbjct: 61 EELIGETMIRLIDGAIDQLAQLEHIAGARDKLEAMLEWALRVRLEGGLPFLPSTSAPVRD 120 Query: 121 MLMRNVKYVMRVLKLNGQLEKLVKDAQKNGEIDAALPSDVVLYSYYARTCDPAVDYLQKF 180 MLMRNVKYVMRVLKLNGQLEKLVK+AQK GE+DAALPSDVVLYSYYARTCDPAVDYLQKF Sbjct: 121 MLMRNVKYVMRVLKLNGQLEKLVKEAQKAGELDAALPSDVVLYSYYARTCDPAVDYLQKF 180 Query: 181 SKMSTDEIVKYMLHVAFNGFTK 202 SKM ++I+KYMLHVAF GF + Sbjct: 181 SKMGNEDIIKYMLHVAFKGFEQ 202 >ref|YP_293277.1| regulatory protein, TetR [Ralstonia eutropha JMP134] gb|AAZ65420.1| regulatory protein, TetR [Ralstonia eutropha JMP134] Length = 204 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 131/199 (65%), Positives = 161/199 (80%) Query: 1 MSIFGKLSFKDQAYKLRENAILDAATSVLGSKGYDLMTMDDVAGAVGISKPSLYKHFKSK 60 M I GKLSFKDQ ++LRE+AILDA T +L KG+DLMTMDDVAG VGISKP LYKHFKSK Sbjct: 1 MGILGKLSFKDQTFRLREDAILDATTRILADKGFDLMTMDDVAGEVGISKPILYKHFKSK 60 Query: 61 EELIGETMIRLVDGAIDQLAQLEPIPSPRGKLEAMLEWALRVRLEGGLPFLPSTSAHVRE 120 ++L+G MIRL+DGAID L QL + G+L A+L WALRVRLEGGLPFLPSTS HVRE Sbjct: 61 DDLVGAAMIRLIDGAIDFLEQLPQQETAMGRLRALLAWALRVRLEGGLPFLPSTSPHVRE 120 Query: 121 MLMRNVKYVMRVLKLNGQLEKLVKDAQKNGEIDAALPSDVVLYSYYARTCDPAVDYLQKF 180 ML N+ YV RV KLNG L+ LV +A+K+G++DAALP DV+L+SYY+RTCDPAV+YL+ + Sbjct: 121 MLTHNLGYVTRVFKLNGILKGLVGEAKKSGDLDAALPDDVILFSYYSRTCDPAVEYLRLY 180 Query: 181 SKMSTDEIVKYMLHVAFNG 199 +K+ + IV +ML V F+G Sbjct: 181 AKLDDERIVAHMLDVCFHG 199 >ref|NP_902893.1| transcription regulator, TetR family [Chromobacterium violaceum ATCC 12472] gb|AAQ60889.1| probable transcription regulator, TetR Family [Chromobacterium violaceum ATCC 12472] Length = 211 Score = 248 bits (632), Expect = 5e-64, Method: Composition-based stats. Identities = 122/201 (60%), Positives = 156/201 (77%) Query: 1 MSIFGKLSFKDQAYKLRENAILDAATSVLGSKGYDLMTMDDVAGAVGISKPSLYKHFKSK 60 M I G+LSFKDQA+KLRE A+LDA T +L SKG+DLMTMDDVAG GISKPSLYKHFKSK Sbjct: 1 MGILGRLSFKDQAFKLREQAVLDATTRMLASKGFDLMTMDDVAGEAGISKPSLYKHFKSK 60 Query: 61 EELIGETMIRLVDGAIDQLAQLEPIPSPRGKLEAMLEWALRVRLEGGLPFLPSTSAHVRE 120 +EL E MIRL+D A D LA+ P SP +L +L WALRVRLEGGLPFLPS S VR Sbjct: 61 DELATEVMIRLLDDAQDFLARQAPELSPLARLRDLLAWALRVRLEGGLPFLPSASPQVRA 120 Query: 121 MLMRNVKYVMRVLKLNGQLEKLVKDAQKNGEIDAALPSDVVLYSYYARTCDPAVDYLQKF 180 ML R+++YV R +KL+ L+ +V+ A++ GE+ A +P+DV+LYSYY+RTCDPAV+YL+ + Sbjct: 121 MLTRSLRYVSRAIKLHKTLQGIVEQAKRQGELRADMPTDVILYSYYSRTCDPAVEYLRVY 180 Query: 181 SKMSTDEIVKYMLHVAFNGFT 201 K ++IV++ML V F+G + Sbjct: 181 GKYPDEDIVRHMLEVCFDGMS 201 >ref|YP_002795326.1| transcription regulator, TetR Family [Laribacter hongkongensis HLHK9] gb|ACO74317.1| Probable transcription regulator, TetR Family [Laribacter hongkongensis HLHK9] Length = 203 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 115/199 (57%), Positives = 155/199 (77%) Query: 1 MSIFGKLSFKDQAYKLRENAILDAATSVLGSKGYDLMTMDDVAGAVGISKPSLYKHFKSK 60 MSI G+LSFKDQA++LRE A+LDA T++L SKG+DLMTMDDVA G+SKPSLYKHF+SK Sbjct: 1 MSIMGRLSFKDQAFRLREQAVLDATTTLLASKGFDLMTMDDVAEGAGLSKPSLYKHFRSK 60 Query: 61 EELIGETMIRLVDGAIDQLAQLEPIPSPRGKLEAMLEWALRVRLEGGLPFLPSTSAHVRE 120 E L E MIRL+D A++ L +P+ + +L+ ++EWALR RLEGGLPFLPSTS HVR+ Sbjct: 61 EALATEVMIRLLDRALEHLDAQDPVMDGKARLDNLMEWALRTRLEGGLPFLPSTSPHVRD 120 Query: 121 MLMRNVKYVMRVLKLNGQLEKLVKDAQKNGEIDAALPSDVVLYSYYARTCDPAVDYLQKF 180 MLM +V+Y +R+ +L+ QL++LV+ A+ G I LP+DV+LY+YY+RTCDPAVDY++ F Sbjct: 121 MLMHSVRYSLRIYRLHTQLQQLVEQARTEGSIRNDLPTDVLLYAYYSRTCDPAVDYMKDF 180 Query: 181 SKMSTDEIVKYMLHVAFNG 199 + DEI+ M + F+G Sbjct: 181 GRYDDDEIIACMRSIMFSG 199 >ref|YP_004847640.1| TetR family transcriptional regulator [Pseudogulbenkiania sp. NH8B] dbj|BAK77226.1| transcriptional regulator, TetR family [Pseudogulbenkiania sp. NH8B] Length = 203 Score = 244 bits (624), Expect = 4e-63, Method: Composition-based stats. Identities = 123/202 (60%), Positives = 155/202 (76%) Query: 1 MSIFGKLSFKDQAYKLRENAILDAATSVLGSKGYDLMTMDDVAGAVGISKPSLYKHFKSK 60 MSI KLSFKDQA+KLRE A+LDA T +L SKG+DLMTMDDVAG GISKPSLYKHFKSK Sbjct: 1 MSILSKLSFKDQAFKLREQAVLDATTKLLASKGFDLMTMDDVAGEAGISKPSLYKHFKSK 60 Query: 61 EELIGETMIRLVDGAIDQLAQLEPIPSPRGKLEAMLEWALRVRLEGGLPFLPSTSAHVRE 120 E+L E MIRL+DGA++ L L+ S + +L ++LEWALRVRL+GGLPFLPS+S VR Sbjct: 61 EDLATEVMIRLLDGALEYLDGLDAGMSGKERLGSLLEWALRVRLQGGLPFLPSSSPQVRA 120 Query: 121 MLMRNVKYVMRVLKLNGQLEKLVKDAQKNGEIDAALPSDVVLYSYYARTCDPAVDYLQKF 180 ML RN++YV RV +L+ QL+ +V A+ GEI LP+DV+LY+YY+RTCDPAVDY++ + Sbjct: 121 MLTRNIRYVTRVYQLHKQLQGMVDKAKAAGEIRDDLPTDVILYAYYSRTCDPAVDYMKDY 180 Query: 181 SKMSTDEIVKYMLHVAFNGFTK 202 S D+IV +M + F G K Sbjct: 181 GHYSDDDIVAHMRSMIFTGIAK 202